Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
JC	NZ_LN832404	339,148	93 bp x 4	26.8%	amplification	[EK12AG100_RS01670]	[EK12AG100_RS01670]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_LN832404	339148 =	77 (0.930)	26 (0.360)	21/494	NT	26.8%	intergenic (+13/‑37)	EK12AG100_RS01665/EK12AG100_RS01670	DUF1116 domain‑containing protein/hypothetical protein
	?	NZ_LN832404	= 339333	75 (1.040)					coding (149/204 nt)	EK12AG100_RS01670	hypothetical protein

AAGCTCTTTCATGTTGTTATGTCCGCTACAGAGGGTGATGGGGTTATGACCAACGCCAGACTGCCTGATGCGCTACGCTTATCAGGCCTACAATTCTCGC‑GCCACTCGTAGGCCGGATAAGGCGTTCACGC‑CGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NZ_LN832404/339475‑339148 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgtaggccggataaggcgttcacgccgcatccggcaATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACG‑CCGCATCCGGCATGAACATGTAGGTCAGACGCCGTAACGTTCGCACCAGCCAAGAATGGCTTTCTCGAAGCAGGCAAAAGGTGGATGCACAATGCCCGCGCCAATCATGCCGACGCC  <  NZ_LN832404/339333‑339043                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AAGCTCTTTCATGTTGTTATGTCCGCTACAGAGGGTGATGGGGTTATGACCAACGCCAGACTGCCTGATGCGCTACGCTTATCAGGCCTACAATTCTCGC‑GCCACTCGTAGGCCGGATAAGGCGTTCACGC‑CGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGT                                                                                                                                                                                                                                                                                                                                       >  1:514026/1‑295 AAGCTCTTTCATGTTGTTATGTCCGCTACAGAGGGTGATGGGGTTATGACCAACGCCAGACTGCCTGATGCGCTACGCTTATCAGGCCTACAATTCTCGC‑GCCACTCGTAGGCCGGATAAGGCGTTCACGC‑CGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGT                                                                                                                                                                                                                                                                                                                                       >  1:245368/1‑295           ATGTTGTTATGTCCGCTACAGAGGGTGATGGGGTTATGACCAACGCCAGACTGCCTGATGCGCTACGCTTATCAGGCCTACAATTCTCGC‑GCCACTCGTAGGCCGGATAAGGCGTTCACGC‑CGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATA                                                                                                                                                                                                                                                                                                                             >  1:94892/1‑295                   ATGTCCGCTACAGAGGGTGATGGGGTTATGACCAACGCCAGACTGCCTGATGCGCTACGCTTATCAGGCCTACAATTCTCGC‑GCCACTCGTAGGCCGGATAAGGCGTTCACGC‑CGCATCCGGCCATGGTGACAAATGCCTGATGCGCTACGCTTAACAGGCCTACAGATTCTAGCGCCACTCGTAGGCCGGAAACGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTACAGCACTCCGCTTATCAGGCCTACAAATTCTTGCCACATACTTAGGCCGGACAAGGCGTTa                                                                                                                                                                                                                                                                                                                     >  2:701659/1‑294                   ATGTCCGCTACAGAGGGTGATGGGGTTATGACCAACGCCAGACTGCCTGATGCGCTACGCTTATCAGGCCTACAATTCTCGC‑GCCACTCGTAGGCCGGATAAGGCGTTCACGC‑CGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTC                                                                                                                                                                                                                                                                                                                     <  1:445142/295‑1                     GTCGGCGACAGAGGGGGATGGTGTTAGTGCCAACGCCGAGCTGCCTGATGCGCTACGCTTATAAGGCCTACAATTCTCGC‑GCCACTCGTAGGCCGGAGAGGTGGTTCACGC‑CGCAGCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGGCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCAC                                                                                                                                                                                                                                                                                                                   <  2:480236/295‑1                        ggcgaatgggggctATGGGGTTTGGGCCAACGCCGGATTGCGTGATGCGCTACCCTTTTCATGCATACAA‑GCTCGCAGCCACGTGTAGGCCGGATAAGGCGTTCACGC‑CGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCC                                                                                                                                                                                                                                                                                                                <  2:548947/281‑1                        CGCTACAGAGGGTGATGGGGTTATGACCAACGCCAGACTGCCTGATGCGCTACGCTTATCAGGCCTACAATTCTCGC‑GCCACTCGTAGGCCGGATAAGGCGTTCACGC‑CGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGACTGATGCGCTACGCCTATCAGGCCTACAGGATCTTTCGCCCGTCGTAGGCCGGCTAAGGCGCTCACGCC                                                                                                                                                                                                                                                                                                                >  2:44238/1‑295                          cgACAGAGGGTGATGGGGTTATGACCAACGCCAGACTGCCTGATGCGCTACGCTTATCAGGCCTACAATTCTCGC‑GCCACTCGTAGGCCGGATAAGGCGTTCACGC‑CGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGC                                                                                                                                                                                                                                                                                                              <  1:651251/293‑1                            ACAGAGGGTGATGGGGTTATGACCAACGCCAGACTGCCTGATGCGCTACGCTTATCAGGCCTACAATTCTCGC‑GCCACTCGTAGGCCGGATAAGGCGTTCACGC‑CGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCAT                                                                                                                                                                                                                                                                                                            <  1:339121/295‑1                               GAGGGTGATGGGGTTATGACCAACGCCAGACTGCCTGATGCGCTACGCTTATCAGGCCTACAATTCTCGC‑GCCACTCGTAGGCCGGATAAGGCGTTCACGC‑CGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGCTGCGCTACGCTTCTCAGGCCTACCGATTCTTGCGCCCTTCGTAGGCCGGATAAGGCGGTCACGCCGCATCCG                                                                                                                                                                                                                                                                                                         >  1:185785/1‑295                                AGGTTGATGGGTTATTGCCCACGGCCGGATGGCCTGCGGCGTTACGCTTATCAGTCCGACAAGTCTCGC‑GCCACTGGTAGGGCGGAGAAGGCGTTCACGC‑CCGATCCGGAAAGGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGG                                                                                                                                                                                                                                                                                                        <  2:580829/295‑1                                     GATGGGGTTATGACCAACGCCAGACTGCCTGATGCGCTACGCTTATCAGGCCTACAATTCTCGC‑GCCACTCGTAGGCCGGATAAGGCGTTCACGC‑CGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCCCCTCCGGCAGTGACGGCAAATGCCTGCTGCGCTACGCTTATACGGCCCACAGATTCTTGCCCCCTACGTGAGCCGGAAACGGCGCTTACTCCCCATCCGccccag                                                                                                                                                                                                                                                                                                   >  2:649720/1‑289                                      ATGGGGTTATGACCAACGCCAGACTGCCTGATGCGCTACGCTTATCAGGCCTACAATTCTCGC‑GCCACTCGTAGGCCGGATAAGGCGTTCACGC‑CGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTTGTGGCAAATGCCTGATTCGCTACGCTTATCCGGCCTACCGATTCCTGCGCCATTCGTAGGCCGGCTAAGGCGTTCACGCCGCATCCCGCACTGG                                                                                                                                                                                                                                                                                                  >  2:133893/1‑295                                        GGGGTTATGACCAACGCCAGACTGCCTGATGCGCTACGCTTATCAGGCCTACAATTCTCGC‑GCCACTCGTAGGCCGGATAAGGCGTTCACGC‑CGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTG                                                                                                                                                                                                                                                                                                <  1:588510/295‑1                                          GGTTATGACCAACGCCAGACTTCCTGATGCGCTACGCTTATCAGGCCTACAATTCTCGC‑GCCACTCGTAGGCCGGATAAGGCGTTCACGC‑CGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGAC                                                                                                                                                                                                                                                                                              <  1:453480/295‑1                                              ATGACCAACGCCAGACTGCCTGATGCGCTACGCTTATCAGGCCTACAATTCTCGC‑GCCACTCGTAGGCCGGATAAGGCGTTCACGC‑CGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAAT                                                                                                                                                                                                                                                                                          >  1:72463/1‑295                                                GACCAACGCCAGACTGCCTGATGCGCTACGCTTATCAGGCCTACAATTCTCGC‑GCCACTCGTAGGCCGGATAAGGCGTTCACGC‑CGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGC                                                                                                                                                                                                                                                                                        >  1:171291/1‑295                                                GACCAACGCCAGACGGCCTGATGCGCTACGCTTATCAGGCCTACAATTCCCGC‑GCCACTCGTAGGCCGGATAAGGCGTTCACGC‑CGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGC                                                                                                                                                                                                                                                                                        <  1:622395/295‑1                                                    AACGCCAGACTGCCTGATGCGCTACGCTTATCAGGCCTACAATTCTCGC‑GCCACTCGTAGGCCGGATAAGGCGTTCACGC‑CGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTTCCCCCTTCTCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTCACAAATGtcgtg                                                                                                                                                                                                                                                                                    >  2:190765/1‑290                                                          AGACTGCCTGATGCGCTACGCTTATCAGGCCTACAATTCTCGC‑GCCACTCGTAGGCCGGATAAGGCGTTCACGC‑CGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTCCAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGGTCCCGCCGCATCCGGCAAGCGGGCCAAATGCCTGATGCGCc                                                                                                                                                                                                                                                                              >  2:109593/1‑294                                                                                                           TCGTAGGCCGGATAAGGCGTTCACGC‑CGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAG                                                                                                                                                                                                                              <  1:427272/295‑1                                                                                                                          GGCGTCCCCGC‑CGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCAT                                                                                                                                                                                                               <  1:418690/295‑1                                                                                                                              gTCACGCGCGCGTCCTGCAATGGTGAACAAGCGCTGTTGCGCCACGCGTTTCAGGCCTACAGGTTGCCGCGCCATTCGTAGGCCGGAGAGGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCGTCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCG                                                                                                                                                                                                            <  2:9346/294‑1                                                                                                                                                     gccatcctgctgtATGCGCGACGCTTATCAGGCCTAC‑CATGATCTGGCAAGTCGGCGGCCGGATAAGGCGTCCACGCCGCATCCGGCAATGGTGACAAATGCCTGTTGCGTGACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGC                                                                                                                                                                                    <  2:514026/282‑1                                                                                                                                                     gccagagTGCCTGATGCGCCACGCTTATCAAGCTTCCA‑ATTCCCGCGCCAATCGTAGGCCGGCTAAGGCGGTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCGACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGC                                                                                                                                                                                    <  2:156339/288‑1                                                                                                                                                             GCCTGATGCGCTACGCTTATCAGGCCTACA‑ATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGATACGCT                                                                                                                                                                            >  1:661194/1‑295                                                                                                                                                                      GCTACGCTTATCAGGCCTACA‑ATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCCTCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCC                                                                                                                                                                   >  1:496361/1‑295                                                                                                                                                                       CTACGCTTATCAGGCCTACA‑ATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACCAATGCCTGATGCGCTACGCTTATCAGGCCT                                                                                                                                                                  >  1:692913/1‑295                                                                                                                                                                                          caagTCTCGCGCCACTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATT                                                                                                                                                <  1:89717/291‑1                                                                                                                                                                                          caATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATT                                                                                                                                                <  1:523673/293‑1                                                                                                                                                                                                tcGCGCCACTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGG                                                                                                                                          <  1:592532/293‑1                                                                                                                                                                                                  GCGCCACTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCCTTCGTAGGCCGGATCAGGCGTTCACGCCGCACCCGGCCATGGTGCCACAAGCCTGACGCGCTACGCTTACCAGGCCTGCAGAGTATGTCGCCATTTGTCGGCC                                                                                                                                        >  2:641343/1‑295                                                                                                                                                                                                   CGCCACTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCCAATGCCTGATGCGCTACGCTTATCAGGCCTACCGCTTCCTGCGCCCTTCGTAGGCCGGATAAGGCGTTCACGCCCCATCCGGCCATGGTGCAAAATGCCTTATTCGCTACGCCTCTCCAGCCTCCCGCTTCATGCCCCATTCGTAatccg                                                                                                                                       >  2:46692/1‑290                                                                                                                                                                                                    GCCACTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGG                                                                                                                                      <  1:211751/295‑1                                                                                                                                                                                                      cgctgtggcgcgGGAGAAGGCGGTCACCGCGGATCCGGCAATGGTGACAAATGCCTGATGCTCTACGCTGAGCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGAT                                                                                                                                    <  2:214307/283‑1                                                                                                                                                                                                        cTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATACGGCAATGGTGACAAATGCCTGATGCGCTACGCCTATCAGGCCTCCAGATTCTTGCGCCATTAGTAGGCCGGAgac                                                                                                                                  >  2:188932/2‑292                                                                                                                                                                                                             AGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCCTTCGTCGGCCGGAGAAGGCGTTCACGCCGCCTCCGGCCATGGCGACAAATGCCAGATGCGCTACGCTTATCCGGCCTCAAGATTATGGCGACACTCGTAGGCCGGATAAGACGT                                                                                                                             >  2:687212/1‑295                                                                                                                                                                                                                                           GCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACG‑CCGCATCCGGCATGAACATGTAGGT                                                                                              >  1:178655/1‑295                                                                                                                                                                                                                                             AATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTCGCGCCACTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCCGGCCTCCAGATTCTTGCGCCATTCGTAGGCCGGTTAAGGCGTTCCCGCCCGCA‑CCGGCCTGGCCATGTAGGACA                                                                                            >  2:581090/1‑295                                                                                                                                                                                                                                                                                                  ctccgtGTAGGCGGGAGAAGGTGTCCACGCCGCATCCGGCGGGGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACG‑CCGCATCCGGCATGAACATGTAGGTCAGACGCCGTAACGTTCGCACCAGCCAAGAATGGCTTTCTCGAAGCAGGCAAAAG                                       <  2:54486/289‑1                                                                                                                                                                                                                                                                                                    acctgcAGGCCGGATAAGGCGTCCACGCCGCATCCGGTAGTGGTGGTAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACG‑CCGCATCCGGCATGAACATGTAGGTCAGACGCCGTAACGTTCGCACCAGCCAAGAATGGCTTTCTCGAAGCAGGCAAAAGGT                                     <  1:694814/289‑1                                                                                                                                                                                                                                                                                                        GTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACG‑CCGCATCCGGCATGAACATGTAGGTCAGACGCCGTAACGTTCGCACCAGCCAAGAATGGCTTTCTCGAAGCAGGCAAAAGGTGGAT                                 <  1:190765/295‑1                                                                                                                                                                                                                                                                                                                  TAAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACG‑CCGCATCCGGCATGAACATGTAGGTCAGACGCCGTAACGTTCGCACCAGCCAAGAATGGCTTGCGCGAAGCAGGCAAAAGGTGGATGCACAATGCC                       <  1:188932/295‑1                                                                                                                                                                                                                                                                                                                   AAGGCGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACG‑CCGCATCCGGCATGAACATGTAGGTCAGACGCCGTAACGTTCGCACCAGCCAAGAATGGCTTTCTCGAAGCAGGCAAAAGGTGGATGCACAATGCCC                      <  1:624239/295‑1                                                                                                                                                                                                                                                                                                                       CGTCCACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACG‑CCGCATCCGGCATGAACATGTAGGTCAGACGCCGTAACGTTCGCACCAGCCAAGAATGGCTTTCTCGAAGCAGGAAAAAGGTGGATGCCCAATGCCCGCGC                  >  1:511959/1‑295                                                                                                                                                                                                                                                                                                                           CACGCCGCATCCGGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACG‑CCGCATCCGGCATGAACATGTAGGTCAGACGCCGTAACGTTCGCACCAGCCAAGAATGGCTTTCTCGAAGCAGGCAAAAGGTGGATGCACAATGCCCGCGCCAAT              >  1:463090/1‑295                                                                                                                                                                                                                                                                                                                               ccctATCTGGCAGTTGTGGCAACTGCGCGATGCGCTGCTCGTCTCAGCTCTACAGGGTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAAGGCCTGATGCGCTACGCTTATCATGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACG‑CCGCATCCGGCATGAACATGTAGGTCAGACGCCGTAACGTTCGCACCAGCCAAGAATGGCTTTCTCGAAGCAGGCAAAAGGTGGATGCACAATGCCCGCGCCAATCATG          <  2:314182/291‑1                                                                                                                                                                                                                                                                                                                                    TCCGGCAGGGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACG‑CCGCATCCGGCATGAACATGTAGGTCAGACGCCGTAACGTTCGCACCAGCCAAGAATGGCTTTCTCGAAGCAGGCAAAAGGTGGATGCACAATGCCCGCGCCAATCATGCCGAC     <  1:616800/295‑1                                                                                                                                                                                                                                                                                                                                       GGCAGTGGTGGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACG‑CCGCATCCGGCATGAACATGTAGGTCAGACGCCGTAACGTTCGCACCAGCCAAGAATGGCTTTCTCGAAGCAGGCAAAAGGTGGATGCACAATGCCCGCGCCAATCATGCCGACGCC  >  1:532853/1‑295                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AAGCTCTTTCATGTTGTTATGTCCGCTACAGAGGGTGATGGGGTTATGACCAACGCCAGACTGCCTGATGCGCTACGCTTATCAGGCCTACAATTCTCGC‑GCCACTCGTAGGCCGGATAAGGCGTTCACGC‑CGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NZ_LN832404/339475‑339148 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgtaggccggataaggcgttcacgccgcatccggcaATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATGGTGACAAATGCCTGATGCGCTACGCTTATCAGGCCTACAGATTCTTGCGCCATTCGTAGGCCGGATAAGGCGTTCACG‑CCGCATCCGGCATGAACATGTAGGTCAGACGCCGTAACGTTCGCACCAGCCAAGAATGGCTTTCTCGAAGCAGGCAAAAGGTGGATGCACAATGCCCGCGCCAATCATGCCGACGCC  <  NZ_LN832404/339333‑339043

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.