Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,228,275	0	T	C	32.7%	105.9 / 14.5	56	pseudogene (335/1287 nt)	mdtQ	pseudogene; putative channel/filament proteins
Reads supporting (aligned to +/- strand):  ref base T (20/17);  new base C (10/8);  total (31/25)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

GCTGGCATTAATATCGGTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTC‑TATTTGCTGCAAGACCGTGTTTAACGCC‑GCCTGGGTTTGCCACTCCCA‑GTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGC‑GGGTTTGCTCGC‑GTTCCGCCGCCCGTG‑C‑TTTAACCGTACCCAGGC‑GGGCAGTAACCTCCGCCCGA‑TTCTTTCCCCAGATATCGAGATG‑CCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGG‑CCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCAT‑ATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCA  >  NC_000913/2228037‑2228512                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                  gCTGGCATTAATTTCGGTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTC‑TATTTGCTGCAAGACCGTGTTTAACGCC‑GCCTGGGTTTGCCACTCCCA‑GTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGC‑GGGTTTGCTCGC‑GTTCCGCCGCCCGTG‑C‑TTTAACCGTACCCAGGC‑GGGCAGTAACCt                                                                                                                                                                                                                                                   <  1:2225807/239‑1 (MQ=255)     gCATTAATATCGGTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTC‑TATTTGCTGCAAGACCGTGTTTAACGCC‑GCCTGGGTTTGCCACTCCCA‑GTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGC‑GGGGTTGCTCGC‑GTTCCGCCCCCCGGG‑C‑TTTAACCGTACCCCGGG‑CGGCAGTAACCTccc                                                                                                                                                                                                                                                >  1:2269044/1‑237 (MQ=255)      cATTAATATCGGTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTC‑TATTTGCTGCAAGACCGTGTTTAACGCC‑GCCTGGGTTTGCCACTCCCA‑GTACAGGCGGGCTAAGCTGCCAGCCAGCAATTGGG‑GGGGTTGCTGGC‑GGTTCCCCGCCCCGG‑C‑CTTTACCGTGACCCCGC‑GGGCGGCAAACACCGc                                                                                                                                                                                                                                               >  2:508605/1‑238 (MQ=255)        ttAATATCGGTTTCCACTCCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTC‑TATTTGCTGCAAGACCGTGTTTAACGCC‑GCCTGGGTTTGCCACTCCCA‑GTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGC‑GGGTTTGCTCGC‑GTTCCGCCGCCCGTG‑C‑TTTAACCGTACCCAGGC‑GGGCAGTAACCTCCGCCCg                                                                                                                                                                                                                                            <  1:1260649/239‑1 (MQ=255)        ttAATATCGGTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTC‑TATTTGCTGCAAGACCGTGTTTAACGCC‑GCCTGGGTTTGCCACTCCCA‑GTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGC‑GGGTTTGCTCGC‑GTTCCGCCGCCCGTG‑C‑TTTAACCGTACCCAGGC‑GGGCAGTAACCTCCGCCCg                                                                                                                                                                                                                                            <  1:1212828/239‑1 (MQ=255)               cGGTTGCCACCCCTTCAACTGAAGAATTAATCCCGTTCTGATATAGCTGGCAATCGGTCGCGATAATGGTGTTCTTCTCTTTTTC‑TATTTGCTGCAAGACCGTGTTTAACGCC‑GCCTGGGTTTGCCACTCCCA‑GTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGC‑GGGTTTGCTCGC‑GTTCCGCCGCCCGTG‑C‑TTTAACCGTACCCAGGC‑GGGCAGTAACCTCCGCCCGA‑TTCttt                                                                                                                                                                                                                                    <  2:1569728/239‑1 (MQ=255)                ggTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTC‑TATTTGCTGCAAGACCGTGTTTAACGCC‑GCCTGGGTTTGCCACTCCCA‑GTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGC‑GGGTTTGCTCGC‑GTTCCGCCGCCCGTG‑C‑TTTAACCGTACCCAGGC‑GGGCAGTAACCTCCGCCCGA‑TTCTTTc                                                                                                                                                                                                                                   <  1:207306/239‑1 (MQ=255)                 gTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTC‑TATTTGCTGCAAGACCGTGTTTAACGCC‑GCCTGGGTTTGCCACTCCCA‑GTACAGGCGGGCTACGCCGCCAGCCCGCAATTGGC‑GGGTTTTCTCCC‑CGTCCGCCCCCCCCGCC‑TTTAACC‑TACCCCCGCGGGGCGGCAACCCCCCCCCGC‑GTCttt                                                                                                                                                                                                                                    >  2:207306/1‑238 (MQ=255)                   ttCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTC‑TATTTGCTGCAAGACCGTGTTTAACGCC‑GCCTGGGTTTGCCACTCCCA‑GTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGC‑GGGTTTGCTCGC‑GTTCCGCCGCCCGTG‑C‑TTTAACCGTACCCAGGC‑GGGCAGTAACCTCCGCCCGA‑TTCTTTccc                                                                                                                                                                                                                                 <  2:1051837/238‑1 (MQ=255)                   ttCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTC‑TATTTGCTGCAAGACCGTGTTTAACGCC‑GCCTGGGTTTGCCACTCCCA‑GTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGC‑GGGTTTGCTCGC‑GTTCCGCCGCCCGTG‑C‑TTTAACCGTACCCAGGC‑GGGCAGTAACCTCCGCCCGA‑TTCTTTccc                                                                                                                                                                                                                                 <  2:2275943/238‑1 (MQ=255)                   ttCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTC‑TATTTGCTGCAAGACCGTGTTTAACGCC‑GCCTGGGTTTGCCACTCCCA‑GTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGC‑GGGTTTGCTCGC‑GTTCCGCCGCCCGTG‑C‑TTTAACCGTACCCAGGC‑GGGCAGTAACCTCCGCCCGA‑TTCTTTccc                                                                                                                                                                                                                                 <  2:178270/238‑1 (MQ=255)                   ttCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTC‑TATTTGCTGCAAGACCGTGTTTAACGCC‑GCCTGGGTTTGCCACTCCCA‑GTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGC‑GGGTTTGCTCGC‑GTTCCGCCGCCCGTG‑C‑TTTAACCGTACCCAGGC‑GGGCAGTAACCTCCGCCCGA‑TTCTTTccc                                                                                                                                                                                                                                 <  1:2063241/238‑1 (MQ=255)                    tCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTC‑TATTTGCTGCAAGACCGTGTTTAACGCC‑GCCTGGGTTTGCCACTCCCA‑GTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGC‑GGGGTTTCTCGCGGTCCCCCCCCCCGGG‑T‑TTTAACCTACCCCAGCG‑GGGCGGAAACCCCCCCCCCA‑TCTTTTcccc                                                                                                                                                                                                                                >  1:1239463/1‑239 (MQ=255)                           cTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTC‑TATTTGCTGCAAGACCGTGTTTAACGCC‑GCCTGGGTTTGCCACTTCCA‑GTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGC‑GGGTTTGCTCGC‑GTTCCGCCGCCCGTG‑C‑TTTAACCGTACCCAGGC‑GGGCAGTAACCTCCGCCCGA‑TTCTTTccc                                                                                                                                                                                                                                 <  1:2019025/230‑1 (MQ=255)                           cTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTC‑TATTTGCTGCAAGACCGTGTTTAACGCC‑GCCTGGGTTTGCCACTCCCA‑GTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGCGGGGTTTGTCCCG‑GTTCCCCCCCCGGGC‑C‑TTTAACGGTACCCAGGC‑GGGCGGTAACTCCCCCCCGG‑TCTTTTcccccaaatcc                                                                                                                                                                                                                         >  1:1131639/1‑232 (MQ=255)                           cTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTC‑TATTTGCTGCAAGACCGTGTTTAACGCC‑GCCTGGGTTTGCCACTCCCA‑GTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGC‑GGGTTTGCTCGC‑GTTCCGCCGCCCGTG‑C‑TTTAACCGTACCCAGGC‑GGGCAGTAACCTCCGCCCGA‑TTCTTTCCCCAGATATCg                                                                                                                                                                                                                        <  1:941836/239‑1 (MQ=255)                            ttCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTC‑TATTTGCTGCAAGACCGTGTTTAACGCC‑GCCTGGGTTTGCCACTCCCA‑GTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGC‑GGGTTTGCTCGC‑GTTCCGCCGCCCGTG‑C‑TTTAACCGTACCCAGGC‑GGGCAGTAACCTCCGCCCGA‑TTCTTTCCCCAGATATCga                                                                                                                                                                                                                       <  1:2077671/239‑1 (MQ=255)                              cAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTC‑TATTTGCTGCAAGACCGTGTTTAACGCC‑GCCTGGGTTTGCCACTCCCA‑GTACAGGCGGGCTACGCTGCCAGCCCGCAATTGGC‑GGGGTTGTCCCC‑GTTTCGCCGCCCCCG‑C‑CTTTACCCCACCCCCGCGGGGGGGTAACCCCCCCCCGG‑TTTTTTcccccatatcccga                                                                                                                                                                                                                      >  2:1005836/1‑229 (MQ=255)                              cAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTC‑TATTTGCTGCAAGACCGTGTTTAACGCC‑GCCTGGGTTTGCCACTCCCA‑GTACAGGCGGGCTACGCTGCCAGCCCGCAATTGGC‑GGGGTTGCTCGC‑GTTTCGCCGCCCGTG‑C‑TTTTACCCTACCCAAGC‑GGGCCGTAAACCCCCCCCGATTTCTTTCCCC‑GATATCgaga                                                                                                                                                                                                                     >  1:1976241/1‑239 (MQ=255)                                        agTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTC‑TATTTGCTGCAAGACCGTGTTTAACGCC‑GCCTGGGTTTGCCACTCCCA‑GTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGC‑GGGTTTGCTCGC‑GTTCCGCCGCCCGTG‑C‑TTTAACCGTACCCAGGC‑GGGCAGTAACCTCCGCCCGA‑TTCTTTccc                                                                                                                                                                                                                                 <  1:171921/217‑1 (MQ=255)                                                          gggCTGGAGAACGGCCGCAATAAGGGTTTGTTGCTCTTTGTA‑TATGGACAGCAAGCCTGTG‑TTAACGCCGGCCTGGGTTTGCCCCTCCCA‑GTACAGGCGGGCTACGCTCCCGCCCAGCAATGGGG‑GGGTTTCCTCGC‑GTCCCGCCGCCCGGT‑C‑TTTAACCGTCCCCGGGC‑GGGGGGTACCCCCCCCCCAA‑TTTTTCCCCCAGATATCGGAGTG‑CCACCCCGCCGTTAAGCCAAAAGTAc                                                                                                                                                                                        <  2:1976241/237‑1 (MQ=255)                                                              ttggggtCGGGCGTGATAATTGTTTTTTTCCTTTTTTCTTTTTTGCGCCAAGCCCGTGTTAACCCCC‑GCC‑GGGTTTTCCCCCCCCAGGTACGGGGGGGCCCCGCGCCCACCCAGCAATGGGG‑GGTTTTGCCCGC‑GTCCCGCCCCCCGTG‑T‑TTAACCCGCCCCCGGGG‑GGGGAGACCCCCCCCCCCGT‑TTCTTCCCCCAAATACGGGGATG‑CCAGCCCGCCGTTAAGCCAAAAGTACCg                                                                                                                                                                                      <  2:1239463/232‑1 (MQ=255)                                                                                      ttCTGCTCTTTTTC‑TATTTGCTGCAAGACCGTGTTTAACGCC‑GCCTGGGTTTGCCACTCCCA‑GTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGC‑GGGTTTGCTCGC‑GTTCCGCCGCCCGTG‑C‑TTTAACCGTACCCAGGC‑GGGCAGTAACCTCCGCCCGA‑TTCtt                                                                                                                                                                                                                                     <  1:2364464/167‑1 (MQ=255)                                                                                                tttC‑TATTTGCTGCAAGACCGTGTTTAACGCC‑GCCTGGGTTTGCCACTCCCA‑GTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGC‑GGGGTTTCTCGC‑GTTTCGCCGCCCGGG‑CTTTTAACCG‑AACCACGG‑GGGGAGTAAACCCCGCCCCC‑TTCTTTtcccccata                                                                                                                                                                                                                           >  2:2364464/1‑162 (MQ=255)                                                                                                   c‑TATTTGCTGCAAGACCGTGTTTAACGCC‑GCCTGGGTTTGCCACTCCCA‑GTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGC‑GGGTTTTCTCGC‑GTTCCGCCGCCCGCG‑C‑CTTTACCGTACCCACGG‑GGGGCGTAACCTcccccccc                                                                                                                                                                                                                                           >  2:2324209/1‑147 (MQ=255)                                                                                                                      tgtTTAACGCC‑GCCTGGGTTTGCCACTCCCA‑GTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGC‑GGGGTTTCTCGC‑GGTCCGCCGCCCCGG‑G‑TTTTAACGTACCCCAGC‑GGGCCGGAACCCCCGc                                                                                                                                                                                                                                               >  2:411200/1‑127 (MQ=255)                                                                                                                                c‑gccTGGGTTTGCCACTCCCA‑GTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGC‑GGGTTTGCTCCC‑GGTCCGCCCCCCCGG‑C‑CTTTACCCTACCCAGGC‑GGGCAGGAAACTCCCCCCCC‑TTCCTTCCCCACATATCGAGATG‑CCCGCCCCCCCTCAAGCCCAAAATAACCTCTGGGTACCACGGGCCCGGCGGCCCCGCGGCCGGAGTTGTCTGAGCAAACGGACCCCAtacaacc                                                                                                                    >  2:2070660/1‑232 (MQ=255)                                                                                                                                             ccACTCCCA‑GTACAGGCGGCCTACGCTGCCAGCCAGCAATTGGC‑GGGTTTGCTCGC‑GTTCCGCCGCCCGTG‑C‑TTTAACCGTACCCAGGC‑GGGCAATAACCTCCGCCCGA‑TTCTTTCCCCAGat                                                                                                                                                                                                                            <  1:481591/123‑1 (MQ=255)                                                                                                                                                   cactggccgggCGGTCTACCGTCCCTGCCAGCATTTGGG‑GGTTTTGCCCGC‑TTTCCGCCCCCTGTT‑T‑TTTCCCCGTCCCCAGGC‑GGGCAGTACCCTCCGCCCGT‑TTCTTCCCCCAGATATGGGGAGG‑CCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGG‑CCCCATTAAGCCTTCTGCCGACATTTTTTGc                                                                                                 <  2:218215/230‑1 (MQ=255)                                                                                                                                                                ggCTACGCTGCCAGCCAGCAATTGGC‑GGGTTTGCTCGC‑GTTCCGCCGCCCGTG‑C‑TTTAACCGTACCCAGGC‑GGGCAGTAACCTCCGCCCGA‑TTCTTTccc                                                                                                                                                                                                                                 <  1:1892855/100‑1 (MQ=255)                                                                                                                                                                          ccagccagCAATTGGC‑GGGTTTGCTCGC‑GTTCCGCCCCCCGGG‑C‑TTTAACCCTAACCAGGC‑GGGCAGTAACCTCCCCCCCA‑TTCTTTCCCCAGATATCga                                                                                                                                                                                                                       >  2:1892855/1‑100 (MQ=255)                                                                                                                                                                           cagccagcAATTGGC‑GGGTTTGCTCCC‑GTTCCCTCCCCCCGG‑C‑CTTTACCCTAACCCGGC‑GGGGAGGAACCCCCCCCCGA‑GTTTTTCCCCAGACTTCGCGGTT‑CCACCCCCCCCTTAAGCCCAAAAGACCCTTTGGGTACCCCCGGCCGGTCGCACCCCCGGCCCGCACGTTCCGTGCAAACAG‑CCCCCCTAAACCTTCTCCCGCCACTTTTTGTCGCCCCCTCACCCCCCGAAAAgc                                                                          >  2:839367/1‑237 (MQ=255)                                                                                                                                                                                  cAATTGGC‑GGGTTTTCTCGC‑GTTCCGCCGCCCGTG‑C‑TTTAACCGTACCCAGGC‑GGGCCGTAACCCCCGCCCGA‑TTCTTTCCCCAGATATCGAGGTG‑CCAGCCCGCCGTTAAGCCAAAAGTACCGTTTGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGG‑CCCCATTAAGCCTTCTGCCGACATTTTTTTCTGCCCCAT‑ATCCCCCGCAAAATCGACCTCCg                                                                 >  2:1775472/1‑239 (MQ=255)                                                                                                                                                                                    aTTGGG‑GGGTTTGCCCGC‑GTTCCGCCCCCCGTG‑C‑TTTACCCGTCCCCAGGC‑GGGCAGTACCCCCCGCCCGA‑TTCTTTCCCCAGATATCGAGATG‑CCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGG‑CCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCAT‑ATCCGCCGAAAAGTCGATCTGCGGa                                                               <  1:1061957/239‑1 (MQ=255)                                                                                                                                                                                        gC‑GGGTTTGCTCGC‑GGTCCGCCGCCCGTG‑C‑TTTAACCCTACCCAGGC‑GGGCAGTAACCCCCCCCCGA‑TTCTTTCCCCAGATATCGAGATG‑CCAGCCCGCCGTTAAGCCCAAAGTACCCTTTGGGTACCCCCGGCCGGTCGTACCCGCGGCCGGGTCGTTCAGAGCAAACGG‑GCCCCATAAGCCTTCTGCCGCCCTTTTTTTCCCCCCCCT‑ATCCGCCCACAAGACGAACTGCGGCCCa                                                            >  2:2362798/1‑238 (MQ=255)                                                                                                                                                                                                      ggtacgaccggccCGTG‑C‑TTTAACCGTACCCAGGC‑GGGCAGTAACCTCCGCCCGA‑TTCTTTCCCCAGATATCGAGATG‑CCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGG‑CCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCAT‑ATCCGCCGACACGTCGCTCTGCGGACCATCCTGAGTGGCa                                                >  2:187565/11‑238 (MQ=255)                                                                                                                                                                                                                  ccGTG‑C‑TTTAACCGTACCCAGGC‑GGGCAGTAACCTCCGCCCGA‑TTCTTTCCCCAGATATCGAGATG‑CCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGG‑CCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCAT‑ATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCg                                      >  1:32400/1‑236 (MQ=255)                                                                                                                                                                                                                  ccGTG‑C‑TTTAACCGTACCCAGGC‑GGGCAGTAACCTCCGCCCGA‑TTCTTTCCCCAGATATCGAGATG‑CCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGG‑CCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCAT‑ATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAAATGCCTTCg                                      >  1:2319229/1‑236 (MQ=255)                                                                                                                                                                                                                        c‑TTTACCCGTCCCCCGGC‑GGGCATTACCCCCCCCCCAT‑TTCTTCCCCAAATTATCGAGATC‑CCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGG‑CCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCAT‑ATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCt                              <  1:1625584/239‑1 (MQ=255)                                                                                                                                                                                                                          tttACCCCTCCCCGGGG‑GGGCATCCACCCCCCCCCCG‑TTCTTTCCCCAAAAATCCGGGTGCCCCGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGG‑CCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCAT‑ATCCGCCGAAAAGTCGATCTGCGGACCATc                                                          <  2:464429/211‑1 (MQ=255)                                                                                                                                                                                                                          ttaacccGTACCCGGGC‑GGGAAGTACCCCCCGCCGGT‑TTCTTCCCCCAGATAGCGGGATG‑CCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGG‑CCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCAT‑ATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCt                              <  1:973063/233‑1 (MQ=255)                                                                                                                                                                                                                             aaCCGTACCCAGGC‑GGGCAGTAACCTCCGCCCGA‑TTCTTTCCCCAGATATCGAGATG‑CCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGG‑CCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCAT‑ATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCa                           >  1:2158158/1‑238 (MQ=255)                                                                                                                                                                                                                             aaCCGTACCCAGGC‑GGGCAGTAACCTCCGCCCGA‑TTCTTTCCCCAGATATCGAGATG‑CCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGG‑CCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCAT‑ATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCa                           >  1:614162/1‑238 (MQ=255)                                                                                                                                                                                                                                  tACCCAGGC‑GGGCAGTAACCTCCGCCCGA‑TTCTTTCCCCAGATATCGAGATG‑CCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGG‑CCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCat‑at                                                                                      >  1:887544/1‑174 (MQ=255)                                                                                                                                                                                                                                  tACCCAGGC‑GGGCAGTAACCTCCGCCCGA‑TTCTTTCCCCAGATATCGAGATG‑CCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGG‑CCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCAT‑ATCTGCCGAAAAGTCGATCTCCGGACCATCCTGAGTGGCAACGGCCTTTGCCTGGGCTTCagctag                      >  2:1402613/1‑238 (MQ=255)                                                                                                                                                                                                                                  tACCCAGGC‑GGGCAGTAACCTCCGCCCGA‑TTCTTTCCCCAGATATCGAGATG‑CCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGG‑CCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCAT‑ATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCagcta                       >  2:403894/1‑237 (MQ=255)                                                                                                                                                                                                                                  tACCCAGGC‑GGGCAGTAACCTCCGCCCGA‑TTCTTTCCCCAGATATCGAGATG‑CCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGG‑CCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCAT‑ATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCagcta                       >  2:710762/1‑237 (MQ=255)                                                                                                                                                                                                                                  tACCCAGGC‑GGGCAGTAACCTCCGCCCGA‑TTCTTTCCCCAGATATCGAGATG‑CCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGG‑CCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCAT‑ATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCagcta                       >  1:75199/1‑237 (MQ=255)                                                                                                                                                                                                                                   aCCCAGGC‑GGGCAGTAACCTCCGCCCGA‑TTCTTTCCCCAGATATCGAGATG‑CCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGG‑CCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCAT‑ATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCa                                                >  1:464429/1‑211 (MQ=255)                                                                                                                                                                                                                                   aCCCAGGC‑GGGCAGTAACCTCCGCCCGA‑TTCTTTCCCCAGATATCGAGATG‑CCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGG‑CCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCAT‑ATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCagcta                       >  1:1540463/1‑236 (MQ=255)                                                                                                                                                                                                                                   aCCCAGGC‑GGGCAGTAACCTCCGCCCGA‑TTCTTTCCCCAGATATCGAGATG‑CCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGG‑CCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCAT‑ATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCagcta                       >  2:843991/1‑236 (MQ=255)                                                                                                                                                                                                                                         gC‑GGGCAGTAACCTCCGCCCGA‑TTCTTTCCCCAGATATCGAGATG‑CCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGG‑CCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCAT‑ATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATgc              >  1:2178247/1‑239 (MQ=255)                                                                                                                                                                                                                                         gC‑GGGCAGTAACCTCCGCCCGA‑TTCTTTCCCCAGATATCGAGATG‑CCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGG‑CCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCAT‑ATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATgc              >  1:2094104/1‑239 (MQ=255)                                                                                                                                                                                                                                         gC‑GGGCAGTAACCTCCGCCCGA‑TTCTTTCCCCAGATATCGAGATG‑CCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGG‑CCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCAT‑ATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGCGGCACCTGCCTTCGCCTTGGCGTCAGCTAGCTGAATgc              >  2:179866/1‑239 (MQ=255)                                                                                                                                                                                                                                            gggCATTACCCCCCCCCCGT‑TTCTTCCCCCAGATAGCGAGATG‑CCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGG‑CCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCAT‑ATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATgcg             <  1:2362798/238‑1 (MQ=255)                                                                                                                                                                                                                                            ggcgaGTACCCCCCCCCCGT‑TTTTTCCCCAAGATACGGAGAGC‑CCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGG‑CCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCAT‑ATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATgcg             <  1:394260/234‑1 (MQ=255)                                                                                                                                                                                                                                                      cTCCGCCCGT‑TTCTTCCCCCAGATATCGAGATG‑CCGGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGG‑CCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCAT‑ATCTGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCa  <  1:1402613/239‑1 (MQ=255)                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                  GCTGGCATTAATATCGGTTTCCACACCTTCAACTGAAGAAGTAATCCCGTTCTGATATAGCTGGCGATCGGTCGCGATAATGGTGTTCTGCTCTTTTTC‑TATTTGCTGCAAGACCGTGTTTAACGCC‑GCCTGGGTTTGCCACTCCCA‑GTACAGGCGGGCTACGCTGCCAGCCAGCAATTGGC‑GGGTTTGCTCGC‑GTTCCGCCGCCCGTG‑C‑TTTAACCGTACCCAGGC‑GGGCAGTAACCTCCGCCCGA‑TTCTTTCCCCAGATATCGAGATG‑CCAGCCCGCCGTTAAGCCAAAAGTACCGTTGGTGTACCACGGGCCGGTCGTACCTGCGGCCGGATCGTTCAGAGCAAACGG‑CCCCATTAAGCCTTCTGCCGACATTTTTTGCCGCTCCAT‑ATCCGCCGAAAAGTCGATCTGCGGACCATCCTGAGTGGCAACTGCCTTCGCCTGGGCTTCAGCTAGCTGAATGCGCTGTTCAGCCA  >  NC_000913/2228037‑2228512

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑