| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,862,661 | 0 | T | G | 31.9% | 65.6 / 19.0 | 74 | pseudogene (943/1617 nt) | glvC | pseudogene, arbutin specific enzyme IIC component of PTS;enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system, arbutin‑like IIB component; PTS system, arbutin‑like IIC component |
| Reads supporting (aligned to +/- strand): ref base T (14/35); new base G (19/4); total (35/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.76e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.26e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACC‑TAGTCAATCAGA‑CCTCCGCCCATGTTGCCCACCACACCAAA‑GAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AA‑GGT‑TGC‑GGG‑AATC‑A‑GC‑A‑A‑G‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGC‑TCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTC > NC_000913/3862426‑3862894 | ccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACC‑TAGTCAATCAGA‑CCTCCGCCCATGTTGCCCACCACACCAAA‑GAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AA‑GGT‑TGc < 2:2456950/239‑1 (MQ=255) tGGCGATTTGGGTCAGCATCATCATCGCGTGGTTGCTGAACATCGGGATCCAGGTTTGCGGTAAAACC‑TAGTCAATCAGA‑CCTCCGCCCATGTTGCCCACCACACCAAA‑GAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AA‑GGT‑TGC‑GGG‑a < 2:1935719/239‑1 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACC‑TAGTCAATCAGA‑CCTCCGCCCATGTTGCCCACCACACCAAA‑GAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AA‑GGT‑TGC‑ggg < 1:1023114/238‑1 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACC‑TAGTCAATCAGA‑CCTCCGCCCATGTTGCCCACCACACCAAA‑GAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AA‑GGT‑TGC‑ggg > 2:1023114/1‑238 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACC‑TAGTCAATCAGA‑CCTCCGCCCATGTTGCCCACCACACCAAA‑GAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGCAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TA‑AA‑GAG‑TTC‑GGG‑AAtatg > 2:1938750/1‑236 (MQ=255) attGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACC‑TAGTCAATCAGA‑CCTCCGCCCATGTTGCCCACCCCACCAAA‑GAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AA‑GGT‑TGC‑GGG‑AATC‑A‑Gc < 1:507695/238‑1 (MQ=255) gggTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACC‑TAGTCAATCAGA‑CCTCCGCCCATGTTGCCCACCACACCAAA‑GAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TTAAA‑GGT‑TGG‑GGG‑agcagcaa > 1:825643/1‑231 (MQ=255) catcatATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACC‑TAGTCAATCAGA‑CCTCCGCCCATGTTGCCCACCACACCAAA‑GAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑TA‑AGG‑TGC‑GGG‑GAAC‑A‑GC‑A‑A‑A‑cccc‑cc > 1:1333092/1‑238 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACC‑TAGTCAATCAGA‑CCTCCGCCCATGTTGCCCACCACACCAAA‑GAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGCGGG‑TT‑AA‑GGT‑TGG‑GGG‑AA‑A‑A‑GCAA‑A‑G‑CCCC‑CCCCTTTTcccc > 1:338319/1‑239 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACC‑TAGTCAATCAGA‑CCTCCGCCCATGTTGCCCACCACACCAAA‑GAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AA‑GGT‑TTT‑GGG‑GAAC‑A‑AC‑ACA‑C‑CCCC‑CCCCTTTTAccc > 2:19222/1‑239 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACC‑TAGTCAATCAGA‑CCTCCGCCCATGTTGCCCACCACACCAAA‑GAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAAAAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGC‑GG‑GT‑AA‑AGG‑TCG‑GGG‑AATC‑AGGA‑A‑A‑C‑CCCA‑CCAC‑TTTACCCg > 1:1498215/1‑239 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACC‑TAGTCAATCAGA‑CCTCCGCCCATGTTGCCCACCACACCAAA‑GAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGCGGG‑TT‑AA‑GGT‑TGG‑GGG‑AACC‑A‑CC‑A‑A‑C‑CCCC‑CCCCTTTTcccca > 1:332600/1‑238 (MQ=255) gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACC‑TAGTCAATCAGA‑CCTCCGCCCATGTTGCCCACCACACCAAA‑GAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGCGGG‑TT‑AA‑GGT‑TGg‑ggggagcc > 2:2876782/1‑208 (MQ=255) gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACC‑TAGTCAATCAGA‑CCTCCGCCCATGTTGCCCACCACACCAAA‑GAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AA‑GGG‑TGC‑GGG‑GAAC‑A‑GC‑C‑A‑A‑CCCG‑CCCCCTTTTcccccttt > 1:160012/1‑233 (MQ=255) gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACC‑TAGTCAATCAGA‑CCTCCGCCCATGTTGCCCACCACACCAAA‑GAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AA‑AGT‑TTG‑GGG‑GATA‑A‑GC‑A‑A‑A‑CCCC‑GCCCCTTTACCCGCtttt > 1:2301381/1‑239 (MQ=255) aaCATCGGGATCCAGTTTTGCGGTAAAACC‑TAGTCAATCAGA‑CCTCCGCCCATGTTGCCCACCACACCAAA‑GAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGC‑GG‑GT‑AA‑AGG‑TTC‑GGG‑GATC‑A‑GC‑A‑A‑A‑CCCG‑CCCCTTTTACCCCCGTTTTCGGTGc > 1:3592872/1‑239 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACC‑TAGTCAATCAGA‑CCTCCGCCCATGTTGCCCACCACACCAAA‑GAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AA‑AGT‑TGC‑GGG‑GATT‑A‑AC‑A‑A‑G‑CCCC‑CCCCTTTTTCCCGCTTTTTCCGTGGGGCa > 1:2391209/1‑239 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACC‑TAGTCAATCAGA‑CCTCCGCCCATGTTGCCCACCACACCAAA‑GAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AA‑AGG‑TGCGGGG‑AATC‑‑‑GC‑A‑A‑A‑CCCC‑CCCCCTTTTCCCCATTTTCCCGTGCGCCa > 1:2046789/1‑239 (MQ=255) tcgagtccaagtttGCGGAAAAACCTTAATCAAT‑AGACCCCCCGCCCATGTCGCCCCCCCCACAAGA‑GAAACAAATGACGGTCGACATTGGGGCCGCAGGCACGGGGGCTCCCGAAAACAGAAAGGGAAAAAGGAACAGGAAGGAAAATACCGGGGGTCCGTAAATC‑CCCACAAG‑AGGGC‑GG‑TTGAG‑GGT‑GGC‑GGA‑AAAC‑A‑GA‑A‑A‑G‑CCCG‑CCACGTTTACCCGATTTTCCGGTGCGGCa < 2:292884/228‑1 (MQ=255) cGGGATCCAGTTTTGCGGTAAAACC‑TAGTCAATCAGA‑CCTCCGCCCATGTTGCCCACCACACCAAA‑GAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AA‑GGG‑TGG‑GGG‑GAAC‑A‑GCAA‑A‑G‑CCCC‑CCCCTTTTACCCGATTTTCCggggggccg > 1:292884/1‑232 (MQ=255) agcacgaGTCAACCAGC‑CCCCCCCCCATTCCCCCCACCACAACAAA‑GAAATACATCACGGTCGACATGGAGGCCGCCAGCACGGGGTGCACCAAAAACAGCAAGGGGAAAATAAAGAGGAAGGAAATTCCCGGCGGTGCGGTAATC‑CCCACCAGCGGGGG‑GG‑TT‑AG‑GGT‑GGG‑GGA‑AATC‑A‑GA‑A‑C‑C‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGaa < 2:2354977/233‑1 (MQ=255) tCAATCAGA‑CCTCCGCCCATGTTGCCCACCACACCAAA‑GAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGC‑GG‑GT‑AA‑GGG‑TTC‑GGG‑GAAC‑A‑GC‑A‑A‑G‑CCCG‑CCCCTTTTACCCCATTTTTCGGTTCGGCAGTGAAGTACATCG‑CTAAAAAAAATCCCa > 1:2128126/1‑238 (MQ=255) ctCAGA‑CCTCCGCCCATGTCCCCCACCACACCAAA‑GAAATACATTACGGTAGACAGTGGGCCCGCCAGCGCGTCGTGTACCGAAAACAGCAAGGGTAAAAGGAACGGGAAGGTAATTCCCAGCGGTTCGGTAATC‑CCCCCCGGCAGGGC‑GT‑TT‑AG‑GGT‑GGG‑GGA‑AATC‑A‑GC‑A‑A‑G‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCgg < 2:2908263/204‑1 (MQ=255) cAGA‑CCTCCGCCCATGTTGCCCACCACACCAAA‑GAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AA‑AGG‑TGC‑GGG‑GATC‑A‑GC‑A‑A‑A‑CCCG‑CCACTTTTTCCCCCTTTTTCGGTGCGGCCGTGAAGGACAACA‑CCAAAGAAAAGccccccgccc > 1:2354977/1‑232 (MQ=255) cGCCCATGTTGCCCACCACACCAAA‑GAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGC‑GG‑GT‑TA‑GGT‑TGC‑GGG‑GATC‑A‑GC‑A‑A‑GCCCCC‑CCCCTTTTCCCCCTTTTTCCGG‑GCGGGAGGGAAgga > 1:2908263/1‑203 (MQ=255) gCCCATGTTGCCCACCACACCAAA‑GAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGC‑GG‑GT‑AA‑GGG‑TGC‑GGG‑GATC‑A‑GC‑A‑A‑G‑CCCC‑CCACTTTTTCCCCATTTTTCggg > 1:1983418/1‑189 (MQ=255) tccacaccacgcaaAA‑GAGATCATTTGCGGGCGACATGGAGGCCGCCAGCACGGGGGCGCCCGCAAACAGCAAGGGAGAAAGGAACGGGAAGAAAACTCCCAGGGGTTGGGTAATC‑CCCCCCAGCA‑GGG‑GG‑TT‑AAGGGT‑TGC‑GGG‑AATC‑A‑GC‑A‑A‑G‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTa < 2:1795505/235‑1 (MQ=255) gCCCACCACACCAAA‑GAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGC‑AG‑TT‑AA‑GGT‑TTC‑GGG‑AATC‑A‑GC‑A‑A‑G‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACCTCG‑CTAAAGAAATGCCCACGGCC‑CCAAAGATTTTTGAGCTa > 2:3039215/1‑238 (MQ=255) ccccaacccaaCAAAGGAGATACATAAGGGCCGACATGGGGGCCGCCAGCACGGCGTGCACCAAAAACAGAAAGGGAAAAAGGAAAAGGAAGGTAAATCCCAGCGGTGCGGTAATC‑CCCCCCAGAAGGGC‑GT‑TT‑AG‑GGT‑GGG‑GGG‑AATC‑A‑GC‑A‑A‑C‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTa < 2:1333092/238‑1 (MQ=255) cATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AA‑GGG‑TGC‑GGG‑GATC‑A‑GC‑A‑A‑A‑CCCC‑CCACTTTTTccc > 1:2762086/1‑149 (MQ=255) aCATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑TA‑AGG‑TGC‑GGG‑GAAC‑A‑GC‑A‑A‑G‑CCCC‑CCCCCTTTTCCCCGTTTTCCGGGGCGGCAGTGGAGTa > 1:751578/1‑163 (MQ=255) ggCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGTGGTTCGGTAATT‑CCCACCAGCATGGC‑GG‑GT‑AA‑GGG‑TGG‑GGG‑GAAC‑A‑ACAA‑A‑C‑CCCC‑CCCCTTTTACCGCATTTCCCGGGGGGGAGGGGAAGAACACCC‑CAAAAAAAAAGCCCCCGCCA‑CCAAAGATTTTTATGTTACCGTGAAGGGC‑AAAACACCCTTCCGGGAACACAGATTTc > 2:341421/1‑239 (MQ=255) gccAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGC‑GGTTT‑AA‑GGT‑GGG‑GGG‑AA‑A‑A‑GC‑A‑A‑GCCCCC‑CCCCTTTTACCCCTTTTTCCGG‑GGGGGAGCGGAGGAAATCG‑CCTAAGAAAAACCCCCCGCA‑CCCAAGATTTTTTAGGTATCGTGTCGGGG‑AAAAACGCCCTCCCGGGACAAAGAgtttcgcg > 2:1518932/1‑233 (MQ=255) gccAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AA‑AGA‑TTC‑GGG‑GAAT‑A‑GCAA‑A‑C‑CCCC‑CCCCTTTTCCCCGATTTT‑CGGTGCGGCCGTGAAGGACATCG‑CTCAAAAAAAGCCCCCCGCACCCAAAATTTTTTGTGTACCCTTGCAGGGA‑AAAACACCCTCCCGGGAA‑AACGAatttcgcc > 2:679368/1‑233 (MQ=255) gCGTGTCCCGAAAACAGAAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCAGGGC‑GG‑TT‑AA‑GGT‑TGC‑GGA‑AATC‑A‑GC‑A‑A‑G‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTa < 1:1642968/186‑1 (MQ=255) cGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGCGGG‑TT‑AA‑GG‑‑TGC‑GGG‑GAAC‑A‑AC‑C‑A‑A‑CCCGCCCCCTTTTACCGCTTTTTCCGG‑GGGGCAGGGAAGGACATCG‑CTCAAAAAAAGCCCACCGCC‑CCCAAAATTTTTTAGTTTCCCGGCGAGGC‑CAAACCCCCCTCCCGGGACAACGATTTTAGcggcgcggcggt > 2:1066703/1‑236 (MQ=255) gtgtACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGC‑GG‑GT‑AA‑AGG‑TGC‑GGG‑GATCAA‑CC‑A‑A‑C‑CCCC‑CCCCTTTTACCCGTTTTTCC‑GTGGGGGGGGGAAGGACAATG‑CCCAAAAAAATCCCACGGCA‑CCCAAAATTTTTTTGTTACCGTGCCGGGCGAAAACCCCCCCCCGGG‑ACAACCATCTCACAGGCCCTgcgccct > 2:2719172/1‑236 (MQ=255) tACCGCAAACAGAAACGGAAAAATGAAAAGGAAGGTAAATCCCAGCGGTTCGGTAATC‑CCCACCAGCAGGGC‑GG‑TT‑AG‑GGT‑GGG‑GGA‑AATC‑A‑GC‑A‑A‑G‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACGAt < 1:746684/217‑1 (MQ=255) cAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGC‑GG‑GT‑AA‑AGG‑TTC‑GGG‑GAAC‑A‑GC‑A‑A‑G‑CCCG‑CCCCCTTTTCCCCATTTTCCGGGGCGGCCGGGGAGAAAATCGCCAAAAAAAAACCCCCCGCCC‑CCAAAAATTTTTTGGTTA‑CGTGCAggg > 2:1642968/1‑186 (MQ=255) aGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AA‑AGG‑TGC‑GGG‑GATC‑A‑GC‑A‑A‑G‑CCCC‑CCACTTTTTCCCGCTTTTTCGGTGCGGCCGGGGAGTACAACG‑CTAAACAAATGCCCCCGGCA‑CCCAAAATTTTTTTGGTTACGTGCAGGGC‑AAAAACCCCCTCCCGGAAAAACGATTTCAGCGGCTcc > 2:746684/1‑218 (MQ=255) gttGAGATGAACAGAAAGATAATTCCGTGCGTTGCGGAACTC‑CCCACAAGCAT‑GT‑GG‑TT‑TA‑GGTGTGA‑GGA‑AACC‑A‑AC‑A‑A‑C‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGAAATGCCCACGGCA‑CCAAAGATTGTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGC‑TCAAACTGAAct < 2:1090244/227‑1 (MQ=255) gAAATGAACAGGAAGGAAAATCCCAGCGTTCCGGTAATC‑CCCACCAGCAGGGC‑GG‑TT‑AA‑GGT‑TGC‑GGA‑AATC‑A‑GC‑A‑A‑G‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGC‑TCAAACTGAACTCTTGCAGAtgct < 1:849511/238‑1 (MQ=255) aaaGGACCAGAAAGTTAATTCCCAG‑GGTTTGGTTATCCCCCACCAGCGTGGG‑GT‑TT‑AG‑GGT‑GGG‑GGG‑AACC‑G‑GA‑A‑A‑G‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGAAAt < 1:3222145/133‑1 (MQ=255) agagAACAGAAAGGAAAGTTCCGGGGGTGCGAT‑ACT‑CCCCCCAAGATTGG‑GG‑TT‑TA‑GGT‑TGG‑GGG‑AACC‑ACAA‑A‑A‑C‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGC‑TCAAACTGAACTCTTGCAGATGCTgcg < 2:1374238/236‑1 (MQ=255) aacggaaaGGTAAATCCCGGGGGTGCGGTAATC‑CCCCCAGGCAGGGC‑GT‑TT‑AG‑GGT‑TGG‑GGG‑AACC‑A‑GC‑A‑A‑G‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGAAATGCCCACGGCA‑CCaa < 1:1179987/136‑1 (MQ=255) aaaGGAAGGTAAACTCCCGGGGGTCGGTAATC‑CCCCCCGACATGGC‑GA‑TT‑AA‑GGT‑TGG‑GGG‑AATC‑A‑GC‑A‑A‑G‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGC‑TCAAACTGAACTCTTGCAGATGCTGCGCCCAg < 1:2093788/237‑1 (MQ=255) gAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AA‑AGG‑TGA‑GGG‑GAAA‑A‑GC‑A‑A‑G‑CCCG‑CCACTTTTAACCGACTTTCCGGTGGGGGAGGGGAGTGGATTG‑CTAAAGAAATACCCACGGct > 2:3222145/1‑132 (MQ=255) aaGGAAAATCCCGGCGTTTCGGTAATC‑CCCCCCAGCGGGGC‑GG‑TA‑AG‑GGT‑GGG‑GGG‑AACC‑A‑GC‑A‑A‑G‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGC‑TCAAACTGAACTCTTGCAGATGCTGCGcc < 1:2719172/231‑1 (MQ=255) aaGGAAAATCCCAGCGGTTGGGTAATC‑CCCCCCAGCAGGGG‑GG‑TT‑AA‑GGT‑TGC‑GGA‑AATA‑A‑GC‑A‑A‑G‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGC‑TCAAACTGAACTCTTGCAGATGCTgcg < 1:3146144/229‑1 (MQ=255) atAAATCCCGGGGGTTGGATAATT‑CCCACAGGCAGGGG‑GT‑TT‑AG‑GGT‑GGG‑GGA‑AAAC‑A‑GA‑A‑G‑G‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCgg < 2:1954797/93‑1 (MQ=255) tAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AA‑GGG‑TGC‑GGG‑GATC‑A‑GC‑A‑A‑G‑CCCG‑CCACTTTTATCCGCTTTTTCTGGGCGGCAGTGAAGGACAACG‑CTCAAGAAAAACCCACCGCC‑CCAAAGAGTTTTgt > 2:1179987/1‑141 (MQ=255) aaaaTGCCGGCGGTGCGGTAATC‑CCCACCAGCAGGGC‑GT‑TT‑AG‑GGT‑GGG‑GGA‑AAGC‑A‑GA‑A‑A‑G‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGC‑TCAAACTGAACTCTTGCAGATGCTGCGCCCAg < 2:160012/229‑1 (MQ=255) atcccAGCGGTTCGGTAATC‑CCCCCCAGGAGGGC‑‑G‑TT‑AA‑GGG‑TGG‑GGGAAAAC‑A‑GC‑A‑A‑G‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGC‑TCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATg < 1:1518932/236‑1 (MQ=255) gCGGTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AA‑AGT‑TGC‑GGG‑GATC‑A‑GC‑C‑A‑G‑CCCC‑CCCCTTTTTCCCCATTTTCCGGGGCGGCCGTGAAGTa > 1:1954797/1‑94 (MQ=255) gtcttCCGTAACC‑CCCACAGGCGTGGT‑GG‑TG‑GA‑TGT‑AGC‑AGG‑AAAC‑A‑GC‑A‑A‑C‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGC‑TCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCt < 2:1598842/235‑1 (MQ=255) ggTTCGGTAATC‑CCCCCCAGCAGGGC‑GG‑TA‑AA‑GGT‑GGG‑GGA‑AACC‑A‑GA‑A‑A‑G‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACAt < 1:202770/95‑1 (MQ=255) ggTAATC‑CCCCCCAGCAGGGC‑GG‑TT‑AG‑GGT‑GGC‑GGA‑AATC‑A‑CC‑A‑A‑G‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTg < 1:1681277/135‑1 (MQ=255) ccccggCAGGGG‑GG‑GT‑AA‑GTG‑TGC‑GGG‑AATC‑A‑GA‑A‑A‑G‑CCCG‑CCACTTTTACCCGGTTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGC‑TCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGAc < 1:2150965/234‑1 (MQ=255) ccccaGCAGGGC‑GG‑TT‑AA‑GGG‑GGC‑GGA‑AAAC‑A‑GC‑A‑A‑G‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGC‑AAATCCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGC‑TCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGAc < 1:2103377/237‑1 (MQ=255) caccaGCATGGC‑GT‑TA‑AA‑GGT‑GGG‑GGG‑AACC‑A‑GA‑A‑G‑G‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGC‑TCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGAc < 1:447103/239‑1 (MQ=255) caccaGCAGGGC‑GG‑TA‑AG‑GGT‑TGG‑GGA‑AATC‑A‑AC‑A‑A‑G‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGC‑TCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGAc < 1:1363647/239‑1 (MQ=255) accaGCATGGC‑GG‑TT‑AA‑GGT‑TGC‑GGG‑GATC‑A‑ACAA‑A‑C‑CCCC‑CCCCTTTTCCCCGGTTTT‑CGGTGCGGCCGGGGAGGAAAACG‑CTAAAAAAAAACCCCCGGGC‑CCCAAGATTTTTTGGTTTCCGCGCAGGGG‑aaaa > 2:1681277/1‑135 (MQ=255) accaGCATGGC‑GG‑TT‑AA‑GGT‑TGC‑GGG‑AATC‑A‑GC‑A‑A‑A‑CCCC‑CCCCCTTTACCCCATTTTCCGGTGCGGCCGGGAAGGACAACG‑CTAAAGAAATTCCCACGGCA‑CCCAAGATTTTTTAGGTACCGTGCAGGGC‑CAAACCGCCTTCCCGGGACAAAGATTTCAGCGGCTCAGCGCGCCAAAATAAAC‑CTTTTCCATGCCGCGCCCCGTACATCTGTAAGGCCCCTTCCAAAGccgtccgggc > 2:2447864/1‑230 (MQ=255) ccaGGAGGGG‑GG‑TT‑AA‑GTT‑TGC‑GGA‑AACA‑A‑GC‑A‑A‑G‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGC‑TCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCa < 1:935437/239‑1 (MQ=255) cggCATGGG‑GG‑GT‑AAGGGT‑GGC‑GGG‑AATC‑A‑GA‑A‑A‑C‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGC‑TCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCa < 1:1436599/237‑1 (MQ=255) cggggC‑GG‑TA‑AA‑GGT‑TGC‑GGC‑AATA‑A‑GC‑A‑G‑C‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGC‑TCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCa < 1:443975/232‑1 (MQ=255) agggggg‑TT‑AG‑GGG‑TGCAGGA‑AATC‑A‑GC‑A‑A‑G‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGC‑TCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCa < 2:740600/230‑1 (MQ=255) c‑GG‑TT‑AA‑GGT‑CG‑‑GGG‑AAAC‑A‑AC‑A‑ACG‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGC‑TCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATaaa < 1:3497089/238‑1 (MQ=255) c‑GG‑TT‑AA‑AGG‑TGC‑GGG‑AATC‑A‑GC‑A‑A‑G‑CCCG‑CCACTTTTACCCGAATTTTCGGTGCGGCAGGGAAGTACATCG‑CTAAAAAAAAACCCACCGCA‑CCAAAAAATTTTTTGGTACCGCGCAGGGC‑AAAACCGCCTTCCGGGAAAAACGATTTCAGCGGCCCCGCGC‑TCAAAACGGACTCTTGCAGAAGCTGCCCCCCGTAccacttaa > 2:3035388/1‑197 (MQ=255) c‑GG‑AT‑AA‑GGT‑GGC‑GGA‑AAAC‑A‑GC‑A‑A‑G‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAATTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGC‑TCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATaaa < 2:825643/238‑1 (MQ=255) aag‑TT‑AG‑GGT‑GGC‑GGA‑AACC‑A‑AC‑A‑A‑G‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGAC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGC‑TCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATaaa < 1:3039215/236‑1 (MQ=255) g‑TT‑AA‑GGT‑TGC‑GGG‑AATC‑A‑GC‑A‑A‑G‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGC‑TCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACt < 1:2389485/238‑1 (MQ=255) aaa‑GGT‑GGC‑GGA‑AATC‑A‑GC‑A‑A‑G‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGC‑TCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTc < 1:19222/238‑1 (MQ=255) tagggT‑GGC‑GGA‑AAGC‑A‑GA‑A‑A‑G‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGC‑TCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTc < 1:506008/236‑1 (MQ=255) t‑tGC‑GGG‑AATC‑A‑GC‑A‑A‑G‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACa > 2:1463632/1‑60 (MQ=255) | CCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACC‑TAGTCAATCAGA‑CCTCCGCCCATGTTGCCCACCACACCAAA‑GAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AA‑GGT‑TGC‑GGG‑AATC‑A‑GC‑A‑A‑G‑CCCG‑CCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGC‑TCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTC > NC_000913/3862426‑3862894 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |