BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,429,984	0	T	G	34.6%	296.6 / 18.3	133	L41V (TTG→GTG)	cycA	D‑alanine/D‑serine/glycine transporter
Reads supporting (aligned to +/- strand): ref base T (19/68); new base G (46/0); total (65/68)
Fisher's exact test for biased strand distribution p-value = 9.61e-21
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 148 total aligned reads displayed.

ATTCATCCCGCGTATTGTTACCTAATATCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGA‑TTTACTCGGGCCGTGGGCAGGATATTTCA‑CCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGCAGACGT  >  NC_000913/4429746‑4430219

aTTCATCCCGCGTATTGTTACCTAATATCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGgt                                                                                                                                                                                                                                                      <  2:1065476/239‑1 (MQ=255)

aTTCATCCCGCGTATTGTTACCTAATATCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGgt                                                                                                                                                                                                                                                      <  2:1534760/239‑1 (MQ=255)

    aTCCCGCGTATTGTTACCTAATATCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCACGCTCACAAACCGTCATATTCAGCTTATTGCCATTGGCGGTGGCCATGGG‑ACGGGgtaggt                                                                                                                                                                                                                                                  >  2:22751/1‑235 (MQ=255)

    aTCCCGCGTATTGTTACCTAATATCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCCCTGGG‑ACGGGgttgtt                                                                                                                                                                                                                                                  >  2:3490458/1‑239 (MQ=255)

    aTCCCGCGTATTGTTACCTAATATCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGgttgtt                                                                                                                                                                                                                                                  >  1:1655037/1‑239 (MQ=255)

      cccGCGTATTGTTACCTAATATCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTa                                                                                                                                                                                                                                                <  1:3355498/239‑1 (MQ=255)

        cgcgTATTGTTACCTAATATCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATg                                                                                                                                                                                                                                              <  1:1289655/239‑1 (MQ=255)

        cgcgTATTGTTACCTAATATCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATg                                                                                                                                                                                                                                              <  2:185412/239‑1 (MQ=255)

         gcgTATTGTTACCTAATATCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGG‑ACGGGGGTGTTTAttg                                                                                                                                                                                                                                             >  1:1664483/1‑237 (MQ=255)

         gcgTATTGTTACCTAATATCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGAAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACATGAGCTACGGCGCAATCTCACAAGCCGACATATTCCGCTTATTGCAATTGGCGGTGCTCGTGGT‑GAGCGGGTGTTTAttg                                                                                                                                                                                                                                             >  2:1525261/1‑237 (MQ=255)

          cgTATTGTTACCTAATATCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGgt                                                                                                                                                                                                                                                      <  1:16048/229‑1 (MQ=255)

             aTTGTTACCTAATATCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTc                                                                                                                                                                                                                                         <  2:220697/239‑1 (MQ=255)

               tGTTACCTAATATCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTAt                                                                                                                                                                                                                                               <  1:2020908/231‑1 (MQ=255)

                  tACCTAATACAGATGAGTCCCGAGACATATTCGACGTATCAACGAGTGACAAAATGCCTTAGAGCCTGAACAACCCAGACAGGTACAGGAAGAAAAAAACAAGGTAGATCAGGTAAGAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGGGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑Ca                                                                                                                                                                                                                                   <  2:2869466/239‑1 (MQ=255)

                    ccTAATATCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCCTTTGT‑TCAGGGGTGttttttgg                                                                                                                                                                                                                                            >  2:16048/1‑224 (MQ=255)

                    ccTAATATCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCACTTGT‑ACGGGGGTGTGTTTGGGGtgtgtgaca                                                                                                                                                                                                                                  >  2:2784691/1‑234 (MQ=255)

                         tatCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGCCATATTCAGCTTATTGCCATTGGCGGCCGCCTTGGT‑AGCGGGGTGTTTTtgtggtgtgggcaaa                                                                                                                                                                                                                                 >  2:1418448/1‑230 (MQ=255)

                         tatCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGAt                                                                                                                                                                                                                            <  1:2995069/239‑1 (MQ=255)

                         tatCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGAGCCCTTGTG‑AAGGGGTTTGTTTTTGGGTCTgggac                                                                                                                                                                                                                                   >  2:2020908/1‑230 (MQ=255)

                              aTGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGGCATTGGT‑ACGGGGTGGTTTTTTGGGGTTGG‑CAAAACGCtttg                                                                                                                                                                                                                         >  1:133906/1‑235 (MQ=255)

                              aTGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCCTTTGT‑AAGGGGGTGGTTATTGGGGCTGG‑CAAAACGATTAg                                                                                                                                                                                                                         >  1:844629/1‑237 (MQ=255)

                              aTGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCCTTGGT‑ACGGGGGTGTTTATTGGGTCTTG‑CAAAAAGATTAg                                                                                                                                                                                                                         >  2:3015868/1‑237 (MQ=255)

                              aTGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGgt                                                                                                                                                                                                                                                      <  1:1035461/209‑1 (MQ=255)

                              aTGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTCCCATTTGT‑GCGGGGGTGTTTATTGGGTTCTG‑CAAAACAAtatgc                                                                                                                                                                                                                        >  1:2111670/1‑234 (MQ=255)

                                   tCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGGTGTTTTTTGGGGCTGG‑CAAAACCATTTG‑CCCTGcc                                                                                                                                                                                                                 >  1:676556/1‑239 (MQ=255)

                                   tCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGG‑ACGGGGGTGTTTATGGGGGCTTG‑CCAAACGCATAG‑CCtttgc                                                                                                                                                                                                                 >  1:2361823/1‑236 (MQ=255)

                                      cGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACg                                                                                                                                                                                                                              <  1:3573382/224‑1 (MQ=255)

                                           cAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCCTTGGG‑ACGGGGGTGGTTTTTGGGTCTGG‑CAAAACGGTTAG‑GCTTGCCGGGGCGT‑c                                                                                                                                                                                                        >  2:784315/1‑239 (MQ=255)

                                                tcgtcgTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTTGCCTTTGT‑ACGGGGGTGGTTTTTGGGGCTGG‑GAAAAAGACTAG‑CCttt                                                                                                                                                                                                                   >  2:3573382/1‑223 (MQ=255)

                                                  gtcggATAATAGAGTTACAAAAGGCCGTAGAACCTGAACAACACATGAAGGTACAAGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCATGCTCCGGCTGAACAGTCGCTACTGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑Att                                                                                                                                                                                                <  2:2143582/239‑1 (MQ=255)

                                                   tcgtATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGGCCTTTGT‑AAGGGGGTGTTTTTTGGGGCTGGCCAAAACGATGAC‑CCTT‑CCGGGGCGtgccat                                                                                                                                                                                                     >  2:2489551/1‑230 (MQ=255)

                                                        tCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGgt                                                                                                                                                                                                                                                      <  1:2767078/183‑1 (MQ=255)

                                                              actgactAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGG‑ACGGGGGTGTTTTTGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCCT‑CGGTC‑ATTTTTGTTTttatt                                                                                                                                                                                    >  1:2678097/1‑238 (MQ=255)

                                                                 gactAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCCTTGGT‑ACGGGGGTGTTTTTTGGGGTTTG‑CAAAACCAATAA‑GCTTTCCGGGGCGT‑CGGTC‑ATTTTTGTTTTtattatt                                                                                                                                                                                 >  2:670860/1‑238 (MQ=255)

                                                                  actAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTTGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑a                                                                                                                                                                               >  1:3284871/1‑239 (MQ=255)

                                                                  actAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGTCATTGGT‑ACGGGGGTGGTTTTTGGGTCTGG‑GCAAACGATTAA‑CCTTGCCCGGCCGG‑CGGTC‑ATTTTTTTTTATTTgtt                                                                                                                                                                                  >  1:3380240/1‑235 (MQ=255)

                                                                  actAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCCTTTGT‑AACGGGGTGttttt                                                                                                                                                                                                                                               >  2:1634677/1‑178 (MQ=255)

                                                                  actAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCCTTGGG‑GAGGGGGTGTTTTTTGGGGCTGG‑GCAAACGATGAG‑CCTTTTCGGGGGCG‑CGGTC‑ATTTTTGTTTTTTTTATC‑a                                                                                                                                                                               >  2:2884357/1‑239 (MQ=255)

                                                                  actAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑GCGGGGGTGTTTATGGGGTCTGG‑GAAAACGATTAG‑CCTTGCCGGGGCGT‑CGATC‑ATTTTTGTTTTTATGATC‑a                                                                                                                                                                               >  1:2848754/1‑239 (MQ=255)

                                                                  actAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATg                                                                                                                                                                                    <  1:735131/235‑1 (MQ=255)

                                                                  actAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGAAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGAGCCATTGGT‑ACGGGGGTGGTTATGTGGGCGGG‑CAAAAAAAATAG‑CCTTGCCGGGCCGT‑CCGTC‑ATTTTTGTTTTTATGAtaa                                                                                                                                                                                >  1:284216/1‑237 (MQ=255)

                                                                            gTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGTCATTTGT‑ACGGGGGTGTTTTTGGGGTCTGG‑GAAAACGATTAG‑GCCTTCCGGGACGTGCGGTC‑GTTTTGGTTTTTTCAATC‑TTTGGttttt                                                                                                                                                                      >  2:125880/1‑238 (MQ=255)

                                                                            gTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGGGGCATTGGT‑AAGGGGGTGGTTATgg                                                                                                                                                                                                                                             >  2:730996/1‑172 (MQ=255)

                                                                             tAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGGGCCATTGGT‑AAGGGGGTGTTTATTGGGTCTGG‑CAAAACGATTAG‑GCCTGTCGGGCCG‑‑CGGTG‑TTTTTTTTTTTTTTGGTC‑ATTTGttttttt                                                                                                                                                                    >  2:1170137/1‑235 (MQ=255)

                                                                                  ccTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGtttt                                                                                                                                                                       <  1:1258264/231‑1 (MQ=255)

                                                                                            acagacagGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGt                                                                                                                                                         <  1:784315/235‑1 (MQ=255)

                                                                                                acagGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGACGTTGCCGATGATCAGGCTCCGGCTGAACAGTAGCCACGGCGCAATCTCACAAACCGAAATATTCAGTTTATTGCCATTGGAGGGGGCATTTGT‑AAGGGGGGGGTTTCGGGGTGTTG‑CTAAACCAAAAA‑CCCTGGCGCGCCGT‑CGGGCTATTTTC‑TGTGTTTTGTC‑ATTGGTTTTTAGTTCTTTTTCGTGATg‑g‑gg                                                                                                                                                >  2:371406/1‑238 (MQ=255)

                                                                                                            agaaAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAAt                                                                                                                                   <  1:2368940/239‑1 (MQ=255)

                                                                                                              aaaaaaaCATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGGCCTTGGC‑ATGGGGGTGTCTTTTGGGTCTGG‑CCAAACAATTAG‑CCCTTCCGGGCCGG‑CGTTC‑CTTTTCTTTTGTTTTGTC‑TTTGGTTTTTTGGTCTTTTTGTTGATG‑T‑GGGCAATGTGGGa                                                                                                                                     >  2:2716002/1‑235 (MQ=255)

                                                                                                              aaaaaaaCATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑Caa                                                                                                                                                                                                                                  <  1:1024803/148‑1 (MQ=255)

                                                                                                                aaaaaCATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAATtgct                                                                                                                               <  1:2412423/239‑1 (MQ=255)

                                                                                                                        ggTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAATTGCTGCTTTCGa                                                                                                                       <  1:3055979/239‑1 (MQ=255)

                                                                                                                        ggTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAATTGCTGCTTTCGa                                                                                                                       <  1:1158724/239‑1 (MQ=255)

                                                                                                                        ggTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGGGCCATTGGT‑ACGGGGGTGTTTTTTGGGTCTGG‑CAAAACAGTTAG‑c                                                                                                                                                                                                                       >  2:1024803/1‑148 (MQ=255)

                                                                                                                        ggTAGAGCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAATTGCTGCTTTCGa                                                                                                                       <  1:2061159/239‑1 (MQ=255)

                                                                                                                         gTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAATTGCTGCttt                                                                                                                          <  1:3296931/235‑1 (MQ=255)

                                                                                                                             aTCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCggg                                                                                                                                                                                                              <  1:323840/152‑1 (MQ=255)

                                                                                                                                  gTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGGCCTTGGG‑ACGGGGTTGGTTATGGGGTGTGG‑GAAAAAGATTAG‑CCGTGCTGGGGGGG‑TGATC‑ATTTTCGGGTTTATGTTC‑ATTTGTAGTTTGCTCGTGTTTTCGGTG‑C‑GGGCACTAGGGGGGTTGCGTGTTGTGAATCTGGag                                                                                                               >  2:340482/1‑236 (MQ=255)

                                                                                                                                       aGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAAt                                                                                                        <  2:1740152/239‑1 (MQ=255)

                                                                                                                                        gTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCGATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCCTTTGTGACGGGTTTGTTTTTGGGGT‑TGG‑CAAAAACGTTAGCCCTTGCGGGGCCGG‑GGTGC‑TTTTTGTTTTTTAT‑ATCAATTGGTTTTGT‑TTTTTTTTTGTGGTG‑CTGGGGTTGGGGGGAATTGTGTTTTTGGAATTTGGAATACat                                                                                                          >  2:3277075/1‑236 (MQ=255)

                                                                                                                                          cGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTTGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCtt                                                                                                     <  2:3284871/239‑1 (MQ=255)

                                                                                                                                            ttGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGgtt                                                                                                                                                                                                                                                     <  2:1252278/100‑1 (MQ=255)

                                                                                                                                            ttGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGGGCCATTGGT‑ACGGGGTTGTTTTTGGGGGCTGG‑CAAAACGATTAG‑CCTTGCCGGGGCGG‑CGTTC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATTTTCTTTTTTGTGTTG‑C‑GGGGGATGGGGGGATTGCTGCTTTCGTATTTTGGATACAAATCtttt                                                                                                   >  2:594352/1‑239 (MQ=255)

                                                                                                                                                    gctCAGGCTCCGCCTGAACAGTCGCTACGGCGCAATCTCACAAACCGGCATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTTTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACtt                                                                                           <  2:2823426/237‑1 (MQ=255)

                                                                                                                                                     atCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑Atttt                                                                                                                                                                                              <  1:3230335/142‑1 (MQ=255)

                                                                                                                                                               ggCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGgt                                                                                                                                                                                                                                                      >  1:2954684/1‑80 (MQ=255)

                                                                                                                                                                   gAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGA‑TTTACt                                                                           <  1:1811733/239‑1 (MQ=255)

                                                                                                                                                                    aaCAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCCTTGGT‑ACGGGGGTGTTTATGGGGGCTGG‑CCAAACCATTAG‑CCCTTCCGGGGCGG‑CGGTC‑ATTTTTGTTTTTATTATC‑ATTTGTTTTTTTCTCTTTTTTGTTATGTC‑GGGC‑ATGGGGGGAGTTCTGGTTTTGGATTTTGGATATAAATCTTTTAGTGTCTTCGGTTCCGA‑tttcttt                                                                          >  2:3446120/1‑235 (MQ=255)

                                                                                                                                                                         tCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAATTGCTGCTTTCGAATCTgg                                                                                                                 <  1:2686241/196‑1 (MQ=255)

                                                                                                                                                                          cGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTtat                                                                                                                                                                                       <  1:696148/128‑1 (MQ=255)

                                                                                                                                                                                   gcAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTTGG‑ACGGGGGTGTTTATGGGGGCTGG‑CAAAACGAGTAG‑CCTTGCCGGGCCGG‑CGGTC‑ATTTTTGTTTTTATTATC‑ATTGGTTTTTTTCTCTTTTTTGTGATG‑C‑GGGCGATGGGGGGATTGGTGCTTTTGAATCTGGAAATCaaaat                                                                                                       >  2:2686241/1‑194 (MQ=255)

                                                                                                                                                                                   gcAATCGCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGA‑TTTACTCGGGCCGTGGGCAgg                                                            <  1:1706614/238‑1 (MQ=255)

                                                                                                                                                                                         tcACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGA‑TTTACTCGGGCCGTGGGCa                                                              <  1:1118583/230‑1 (MQ=255)

                                                                                                                                                                                               aCCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGA‑TTTACTCGGGCCGTGGGCAGGATATTTCA‑CCGGc                                              <  1:1413070/239‑1 (MQ=255)

                                                                                                                                                                                                 cGACATATTCAGCTTATTGCCATTGGCGGTGCCCTTGGG‑ACGGGGGTGGTTTTGGGGGCTTG‑GAAAAAGATTAG‑ACCTGCCCGGGCGT‑CGGTC‑ATTTTTTTTTTTATTGTA‑ACTGGTTTTTTTGTCTTTTTCGTGATT‑G‑GGGGAATGGGGGAATTGCTGTTTTCTAGTATGGGTAACAAAATTTTTTGTGAATTCTCTTCCGAGTTTATCTGGGCCGTGGGC‑GGGTAtttttccg                                                 >  2:3073205/1‑230 (MQ=255)

                                                                                                                                                                                                  gACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGA‑TTTACTCGGGCCGTGGGCAGGATATTTCA‑CCGGCTgg                                           <  1:2312887/239‑1 (MQ=255)

                                                                                                                                                                                                   aCATATTCAGCTTATTGCCATTGGCGGTTCCACTTGT‑TCGGGGGTGTTTATTGGGGCTGG‑GAAAAACAATAA‑CCCTTCCGGGGCCT‑CGATC‑CTTTTTGTTTATTTGGAT‑ATTGGTTTTTTGCTCTTTTTCGCGATG‑T‑CGGCTATCGGGGGATTTCTTCTTTCGACTCTTGGATTAAAATCTTTTTGTGACTTTCCTTCCGA‑TTTTCTCGGGCCGTGGGGAGGATCTTTTA‑c                                                  >  2:1656889/1‑231 (MQ=255)

                                                                                                                                                                                                   aCATATTCAGCTTATTGCCATTGGCGGTGCCCTTGGT‑ACGGGGGTGTTTTTGGGGGTTGG‑CCAAACGATTAG‑CCTTGCCGGGGCGG‑CGGTC‑CTTTTTTTTTATATGTTC‑ATTGGTTTTTTGCTCTTTTTTGTGGTG‑C‑GGGCAATGTGGGAATTGCTGCTTTTGAATTTGTTATACAAATCTTTTTGTGACTTTCCTTCCGC‑GTTACTTTGGGTGGGGGCAGGATATTTTA‑CCGCCTggt                                          >  2:233483/1‑238 (MQ=255)

                                                                                                                                                                                                   aCATATTCAGCTTATTGCCATTGGCGGGTCCGTTGGG‑ACAGGGGTGTTTTTGGGGTCTGG‑CCAAAACAGTAG‑CCTTTCCGGGGCGG‑CGGTC‑GTTTTCGTTTATATGATT‑ATTGGTTTTATGCTCTTTTTTGTGATT‑C‑GGGCAATGGGGGGATTGCTTCTTTTGAATCTGGGATACAAACCTTTTATTGGCTTCGCTTCCGA‑TTTACTCTGGCCGTGGGGAGGCTATTTTA‑CCGGCTggt                                          >  2:1996914/1‑238 (MQ=255)

                                                                                                                                                                                                    cATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGA‑TTTACTCGGGCCGTGGGCAGGATATTTCA‑CCGGCt                                             <  1:2784691/235‑1 (MQ=255)

                                                                                                                                                                                                      tatTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑GCGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGctctc                                                                                                                                                               <  2:232134/123‑2 (MQ=255)

                                                                                                                                                                                                        ttCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑Atttt                                                                                                                                                                                              <  2:135059/91‑1 (MQ=255)

                                                                                                                                                                                                        ttCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGA‑TTTACTCGGGCCGTGGGCAGGATATTTCA‑CCGGCTGGa                                          <  1:3596047/234‑1 (MQ=255)

                                                                                                                                                                                                        ttCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGA‑TTTACTCGGGCCGTGGGCAGGATATTTCA‑CCGGCTGGACTTAc                                     <  1:3490458/239‑1 (MQ=255)

                                                                                                                                                                                                              ttATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGA‑TTTACTCGGGCCGTGGGCAGGATATTTCA‑CCGGCTGGACTTACTgg                                  <  1:125880/236‑1 (MQ=255)

                                                                                                                                                                                                              tatttGCCATGGGCGGTGCCATTGTT‑CGGGGTTTGTTTATGGGGTTGGG‑CAAAACGTTTAG‑CCTTGCCGGGCCGT‑‑GATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGA‑TTTACTCGGGCCGTGGGCAGGATATTTCA‑CCGGCTGGACTTACTgg                                  <  1:1170137/232‑1 (MQ=255)

                                                                                                                                                                                                                aTTGCCATTGGCGGTGCCATTGGG‑ACGGGGGTGTTTTTTGGGTCTGG‑CAAAACGATTAA‑CCTTTCCGGGGCGG‑CGATC‑ATTTTTGTTTTTTTGATT‑ATTTGTTTTTTTCTTTTTTTCTTGATG‑G‑TGGGAATGGGGGGATTGCTGCTTTCGTATCTGGTATACAAAACTTTTTGTTATTTTGCTTCCTC‑TTTTCTTGGGGCGGGGGCAGGAGATTTTATCCGGCGGGCCttcttgtttc                               >  2:3145549/1‑230 (MQ=255)

                                                                                                                                                                                                                 ttGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGA‑TTTACTCGGGCCGTGGGCAGGATATTTCA‑CCGGCTGGACTTACTGGTTctgc                            <  1:2489551/239‑1 (MQ=255)

                                                                                                                                                                                                                  tGCCATTGTCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGTGCAGT‑CGATC‑GTTTTCCTTTAGATTATC‑ATTGGTTTTATGGTCTTGTTCGGGAGG‑C‑GGGCAATGGGGGAATTGCTGCTTTCGAAGCGGGAAGACAAAACTTGAAGGTACTTCGCTGCCGA‑TTTGCTCGGGTCGTGGGCTGGATATCTCA‑ACGGCTGGCCTTACTGGTTctgct                           <  2:821852/239‑1 (MQ=255)

                                                                                                                                                                                                                  tGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGA‑TTTACTCGGGCCGTGGGCAGGATATTTCA‑CCGGCTGGACTTACTGGTTctgct                           <  2:2409531/239‑1 (MQ=255)

                                                                                                                                                                                                                            ggTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGA‑TTTACTCGGGCCGTGGGCAGGATATTTCA‑CCGGCTGGACTTACTGGTTCTGCTGGGTTGTAAc                 <  1:594352/239‑1 (MQ=255)

                                                                                                                                                                                                                                    tGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGA‑TTTACTCGGGCCGTGGGCAGGATATTTCA‑CCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATgg         <  1:233483/239‑1 (MQ=255)

                                                                                                                                                                                                                                     ggT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACaa                                                                                                          >  2:3024479/1‑143 (MQ=255)

                                                                                                                                                                                                                                     ggT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACaa                                                                                                          <  1:3024479/143‑1 (MQ=255)

                                                                                                                                                                                                                                           ggggTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAATTGCTGCTTTCGAAt                                                                                                                     >  2:140563/1‑127 (MQ=255)

                                                                                                                                                                                                                                           ggggTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAATTGCTGCTTTCGAAt                                                                                                                     <  1:140563/127‑1 (MQ=255)

                                                                                                                                                                                                                                           ggggTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCGTTTTCGTGATG‑C‑GGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGA‑TTTACTCGGGCCGTGGGCAGGATATTTCA‑CCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGCAGACg   <  1:2159354/239‑1 (MQ=255)

                                                                                                                                                                                                                                            gggTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGA‑TTTACTCGGGCCGTGGGCAGGATATTTc                                                     <  1:2550313/189‑1 (MQ=255)

                                                                                                                                                                                                                                             ggTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGA‑TTTACTCGGGCCGTGGGCAGGATATTTCA‑CCGGCTGGACTTACTGGTTctgct                           >  2:1756598/1‑213 (MQ=255)

                                                                                                                                                                                                                                             ggTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGA‑TTTACTCGGGCCGTGGGCAGGATATTTCA‑CCGGCTGGACTTACTGGTTctgct                           <  1:1756598/213‑1 (MQ=255)

ATTCATCCCGCGTATTGTTACCTAATATCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATGGGGTCTGG‑CAAAACGATTAG‑CCTTGCCGGGCCGT‑CGATC‑ATTTTCGTTTATATGATC‑ATTGGTTTTATGCTCTTTTTCGTGATG‑C‑GGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGA‑TTTACTCGGGCCGTGGGCAGGATATTTCA‑CCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGCAGACGT  >  NC_000913/4429746‑4430219

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 9 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`