| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,074,066 | 0 | T | G | 37.5% | 79.0 / 19.8 | 59 | V843G (GTG→GGG) | flu | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
| Reads supporting (aligned to +/- strand): ref base T (21/14); new base G (0/21); total (24/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.96e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GCCACGCCGGAAAGCAGCGGCAGCTATGGATTCGTCCGTCTGGAGGGTGACCTGATGAGAACAGAGGTTGCCGGTATGTCTGTGACCGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCC‑GGCCTGTGGGCTGA‑CATTGTGGCACA‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTT > NC_000913/2073831‑2074303 | gCCACGCCGGAAAGCAGCGGCATCTATGGATTCGTCCGTCGGGAGGGTGGCCTGATGAGAACAGAGGTTGCCGGTATGTCTGTGACCGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCC‑GGCCTGTGGGCTGA‑CATTGTgg < 2:2561226/238‑1 (MQ=255)gCCACGCCGGAAAGCAGCGGCAGCTATGGATTCGTCCGTCTGGAGGGTGACCTGATGAGAACAGAGGTTGCCGGTATGTCTGTGACCGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCC‑GGCCTGTGGGCTGA‑CATTGTgg < 1:2417607/238‑1 (MQ=255) aCGCCGGAAAGCAGCGGCAGCTATGGATTCGTCCGTCTGGAGGGTGACCTGATGAGAACAGAGGTTGCCGGTATGTCTGTGACCGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCC‑GGCCTGTGGGCTGA‑CATTGTGGcaca < 1:3467269/239‑1 (MQ=255) gCCGGAAAGCAGCGGACGTTTTGGCTTCGTCCGTCTGGAGGGTGACCTGAGGAGAACAGAGGTTGCCGGTATGTCTGTGACCGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCC‑GGCCTGTGGGCTGA‑CATTGTGGCACA‑gg < 2:1346564/239‑1 (MQ=255) cGGCAGCTATGGATTCGTCCGTCTGGAGGGTGACCTGATGAGAACAGAGGTTGCCGGTATGTCTGTGACCGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACCCACGTCCTCC‑GGCCTGTGGGCTGA‑CATTGTGGCACA‑GGGAACCCGCcaca > 1:1988406/1‑239 (MQ=255) ggTCTGTGGCCGGGGGGGTATATGGTGCTGCGGGCCTTTCTTCCGTTGATGTTAGGGATGATGCGGGCTCCCGGGCCGGCACGGTCGGGGAGGAGGCGGGCAGCCGGGGCGGATCCCTGAATCGGGTACACGCGCCCTCC‑GGCTTGTGGGCTGA‑CTTTGGGGCACG‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGcc < 2:318416/217‑1 (MQ=255) gTGCTGCTGACCTTTCGTCCGTTGATGAGAAGGATGACGCCGGCCCCAGCGCCGGGCGGGTCGGGGAGGTCCCCGGCAGCCGGGGGGTAACCCTAAATCTGGACCCCCCGCCCCCC‑GGCTGGGGGGCTGA‑CATTGGGGCACG‑GGAACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCtt < 2:240419/238‑1 (MQ=255) gTTAAGGATGAGGACGGCCCCCGGGCCGGCACGGCCGGGGATGATGCCGGCAGCCGGGGCGGATACCTGAATCTGGTACACACGCCCCCC‑GGCCGGGGGGCTGA‑CATTGTGGCACA‑GGGAACCCGCCACAGCATGAAAGCGTCa < 2:3450741/144‑1 (MQ=255) ggggggcGGCTCGCGGGCCGGCACGGCCGGGGAGGGTGCCGGCGGCGGGGGCGAATCCCTGAATCGGGCCCACCCGTCCCCC‑GGCGGGGGGGCTGA‑CTTGGGGGCACA‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACaa < 2:406845/232‑1 (MQ=255) aCGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCC‑GGCCTGTGGGCTGA‑CATTGTGGcaca < 2:133331/103‑1 (MQ=255) gcccccGCGCCGGCACGGTCCGGGATGATGCCGGCACCCTGGGCGGATACCTGAATCTGGTCCACACGTCCTCC‑GGCCTGTGGGCTGA‑CATTGCGGCACA‑GGGAACCCGCCACAGCATGAAAGCGACATCGGACACTAACGACTTCCGCGCCCGGGGCTGGGGCCGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGGATCACTTACCACCTGATGCTGGAGTCACCACt > 2:3307795/4‑232 (MQ=255) cccggccggggATGATGCGGCCACGCGGGGGGAGTACCGGAGTCTGGACCAGAC‑TGCTCCGGGCCGGGGGGCGGA‑CATTGGGGAACA‑GGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGAc < 2:1448124/231‑1 (MQ=255) tcggggATGATGCGGGCAGCCTGGGCGGATCCCTGAATCTGGTACACACGTCCTCC‑GGCCTGGGGGCTGA‑CATTGTGGCACA‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTg < 1:1403610/170‑1 (MQ=255) tgaggCGGGCAGCCTGGGCGGATACCTGAATCGGGTACACCCGTCCTCC‑GGCCTGGGGGCTGA‑CTTTGTGGCCCA‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGAt < 1:982981/238‑1 (MQ=255) ggggccggccgCGGGGGCGGATACCTGAAGCTGGTACCCACGTCCTCC‑GGCTTGTGGGCTGA‑CATGGTGGCACA‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATg < 1:687882/235‑1 (MQ=255) ccGGCAGCCTGGGCGGATACCTGAATCTGGTACCCACGTCCTCC‑GGCCTGTGGGCTGA‑CATTGTGGCACA‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCAATGGAAACCGGTCGGCCCTCCAGCATCACTGACCACCCGATGCTGGAGCCCCAACTGCAGTATACCTCGCAGGGACATTCCATGGCAGACgat > 2:407643/1‑237 (MQ=255) cggcggCCGGGGGGGATACCGGAATCGGGTACACACGTCCCCC‑GGCCTGTGGGCTGA‑CATTGGGGCACA‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGt < 1:2474505/238‑1 (MQ=255) cGGAAGCCGGGGCGGATACCTGATTTGGGTCCACACGTCCTCC‑GGCTTGTGGGCTGA‑CTTTGGGGCACA‑GGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGt < 1:2406601/238‑1 (MQ=255) cggggCGGATACCAGAATCTGGTACCCCCGTCCTCC‑GGCCGGTGGGCTGA‑CATTGGGGCACA‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCCTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGAc < 1:2234035/235‑1 (MQ=255) ggggATCCCTGACTTTGATCCACCCGTCCTCG‑GGCCTGGGGGCGAA‑CATTGGGGCACG‑GGAAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGc < 1:1266471/236‑1 (MQ=255) ggggACACCTGAACCTGTAACCCACTCCCCCC‑GGCGTGTGGGCTGA‑CATTGGGCAACA‑GGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGc < 1:3132987/236‑1 (MQ=255) gCGGATACCTAAATCTGGTACACCCGCCCCCG‑GGCCTGTGGGCTAA‑CTTTGGGGCACG‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGc < 1:1967024/238‑1 (MQ=255) cccggAATCTGGTACACCCGCCCTCG‑GGCCTGGGGGCTGA‑CTTGGTGGCACG‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATg < 1:2729814/212‑1 (MQ=255) ggattgtGGTCCACCCGCCCCCG‑GGCCTGTGGTTTGA‑CTTGGGGGCACA‑GGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTAtgtg < 1:1054021/233‑1 (MQ=255) gtggacacacccGCCCCCC‑GGCGTGGGGTCAGA‑ATTTGGGCCACA‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGt < 2:174268/233‑1 (MQ=255) cTGGTAAACACGCCCTCC‑GGCCTGTGGGCTGA‑CATTCTGGCACA‑GGGAACCCGCCACAGCATGAAAGCGCCCTCGGACAATAACGACTTCCGCGCCCAGTGCTGGGGCTGGGTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCACCAACTGCAGTATACCAGGCAGGGACTTCCCCTGGATGACGGTAAGGACAACGCTGATTATGTGAAGt > 2:877994/1‑238 (MQ=255) tACACACGACCTCC‑GGCCTGTGGGCTGA‑CATTGCGGCACA‑GGGAACCCGCCACAGCATGAAATCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCGGGGGCTGGCTGGGCTCACCGGAAACCGGTCTTCCCTCCAGTATCACTGACAACATGAGGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTACGGACAACGCCGGTCATGGGAAGTTCggg > 2:1430549/1‑239 (MQ=255) cccccgcccccc‑GGCTTGGGGGCTGA‑CTTGGGGGCACG‑GGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCa < 1:166289/229‑1 (MQ=255) ccaccGTCCGCC‑GG‑CTGGGGGGTGAGCTTTGGGGCGCG‑GGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCa < 2:3310691/235‑1 (MQ=255) cacccGCCCTCC‑GGCCGGTGGGCGGA‑AATTGGGCCCAA‑GGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCa < 1:535815/239‑1 (MQ=255) cggTCCCCC‑GGCCAGTGGGCTAA‑CATGAGGGCACG‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATgg < 1:3252153/237‑1 (MQ=255) ccgcccccc‑GGCCTGTGGGCTGA‑CATGGGGCCACA‑GGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATgg < 1:242107/232‑1 (MQ=255) acGTCCTTC‑GGACAGTGGGCCGA‑AATTGCGGAACA‑GGGAACCCGACACAGCACGAAAGCGTCATCGGACAATAACGACTTCCGCGACCGGGGCTGGGACTGGCTGGGCTCACTGGTAACCGGCCGCCCGTTCAGTATCACTGACAACATGATGCTGGAGCCACAAACGCCGTATACCTGGCCGGGACTTTCCCTGGATGCAGGTAAGGAACACGCCGGTTATGTGCTGTTCgggaaag > 2:342881/1‑234 (MQ=255) cctccccc‑GGCCGGGGGGCTGA‑CTTGGGGGCACA‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGc < 1:754077/237‑1 (MQ=255) gTCCTCC‑GGCCTGTGGGCTGA‑CATTGTGGCACA‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGa > 1:2562448/1‑195 (MQ=255) gTCCTCC‑GGCCTGTGGGCTGA‑CATTGTGGCACA‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCa > 1:1877286/1‑239 (MQ=255) gTCCTCC‑GGCCTGTGGGCTGA‑CATTGTGGCACA‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCa > 2:2006741/1‑239 (MQ=255) gTCCTCC‑GGCCTGTGGGCTGA‑CATTGTGGCACA‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGATGGGGCTGGCTGGGCTCACTGGaaa > 1:1055853/1‑116 (MQ=255) cctcc‑GGCTGGGGGGCGGA‑CATTGTGGCACA‑GGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAg < 1:2434749/238‑1 (MQ=255) cctcc‑GGCCTGTGGGCTGA‑CATTGTGGCACA‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGt > 1:3272097/1‑239 (MQ=255) ctcc‑GGCTGGTGGGTCGA‑‑ATTGGTGCACAGGGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTg < 1:1656526/239‑1 (MQ=255) ctcc‑GGCCTGTGGGCTGA‑CATTGTGGCACA‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGt > 1:2915146/1‑238 (MQ=255) cc‑ggccggGGGGCTGA‑CATTGTGGCACG‑GGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGca < 1:1869066/239‑1 (MQ=255) cc‑GGCCTGTGGGCTGA‑CATTGTGGCACA‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGc > 1:1729546/1‑153 (MQ=255) gCCTGTGGGCTGA‑CATTGTGGCACA‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATACCGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGGGAAGTACGGGCATGGCCGTGCacaa > 2:3496545/1‑239 (MQ=255) gCCTGTGGGCTGA‑CATTGTGGCACA‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACaa > 2:1840739/1‑155 (MQ=255) gCCTGTGGGCTGA‑CATTGTGGCACA‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGcaca > 1:3272232/1‑238 (MQ=255) gCCTGTGGGCTGA‑CATTGGGGCACA‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACaa < 1:1840739/155‑1 (MQ=255) cTGTGGGCTGA‑CATTGTGGCACA‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATTGCAGTGCacaaca > 1:391473/1‑239 (MQ=255) gtgGGCTGA‑CATTGTGGCACA‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGt > 2:2080432/1‑205 (MQ=255) gtgGGCTGA‑CATTGTGGCACA‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGt < 1:2080432/205‑1 (MQ=255) tgGGCTGA‑CATTGTGGCACA‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACAtgt > 2:25753/1‑239 (MQ=255) tgGGCTGA‑CATTGTGGCACA‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGCTCGGGCATGGCAGTGCACAACAtgt > 1:1763865/1‑239 (MQ=255) gA‑CATTGTGGCACA‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATgtgcgtg > 1:1456372/1‑238 (MQ=255) gA‑CATGGGGGCACA‑GGAACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATgtgcgtgc < 1:1086869/239‑1 (MQ=255) ttGTGGCACA‑GGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGggctggggctgg < 2:284282/77‑1 (MQ=255) ttGTGGCACA‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGggctggggctgg > 1:284282/1‑77 (MQ=255) ttGTGGCACA‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACAtgt > 1:1068940/1‑229 (MQ=255) ttGTGGCACA‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGGGCACAACATGTGCGGTCCGGt > 2:689702/1‑239 (MQ=255) tgGCACA‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGttt > 1:1803376/1‑238 (MQ=255) | GCCACGCCGGAAAGCAGCGGCAGCTATGGATTCGTCCGTCTGGAGGGTGACCTGATGAGAACAGAGGTTGCCGGTATGTCTGTGACCGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCC‑GGCCTGTGGGCTGA‑CATTGTGGCACA‑GGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTT > NC_000913/2073831‑2074303 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |