Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,383,7220GA31.8% 112.4 / 24.9 63F80F (TTC→TTT) ycjWLacI family putative transcriptional repressor
Reads supporting (aligned to +/- strand):  ref base G (40/3);  new base A (0/20);  total (40/23)
Fisher's exact test for biased strand distribution p-value = 1.31e-13
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

CATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCATCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGT‑AACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAA  >  NC_000913/1383490‑1383948
                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                    
cATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCATCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGAAGGCATGCAAAACTTCAGAGAAAAAc                                                                                                                                                                                                                                >  1:334170/1‑239 (MQ=255)
                  tGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCATCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGtt                                                                                                                                                                                                              >  2:630899/1‑239 (MQ=255)
                            ccccccggaaaTATCATATTTATAGAGTGGGAAAAAAAATGCCTCCCCCGCTGGCGACTTGACAAAAAAAATCCTTTTATTCTTTTTCTTCTTAT‑TTTGTCTTTCGTTTTTTTGCATATTTTCGGCGGGTTTGTGGGACGTTGGTAATACCACGTCGAAACCTTCTTCTTCAGTTTGGGGGGTGATGGCATACAAAACTTCAGAAAAAAACGGATTCCCCGCCGTAGTTTTGGTCGAAc                                                                                                                                                                                                    <  2:136435/230‑1 (MQ=255)
                                    gAATATCATATTTATCGAGTTGGGCAAAAAATGACTCATCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTATCCGCCGTAGTTTTGGTCGAACGGGTAGaa                                                                                                                                                                                            >  2:1194425/1‑239 (MQ=255)
                                      attcaatatTGATGGGGTTGGAAAAAAAATGCCTCCTCCGAGGGCAACCTAGGAAAAATACTGCTTTTAATTATTTTCTCTTTAA‑TTTTGCTTTCTCTTTTTTGCAGATCTTCTGCGGGTTTGTGCGACGTTTGTAATATCAGGTCAAAACCTCCTTCTTCAGTTTTGGCGGTGATGGCATGAAAACCTTAAGAAAAAAACGAATTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAAt                                                                                                                                                                                          <  2:638690/234‑1 (MQ=255)
                                      atatCATATTTATCGAGTTGGGCAAAAAATGACTCATCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTCA‑TTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCTGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGaaa                                                                                                                                                                                           >  1:724848/1‑238 (MQ=255)
                                               ttATCGAGTTGGGCAAAAAATGACTCATCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAAt                                                                                                                                                                                 >  1:1480070/1‑239 (MQ=255)
                                                 aTCGAGTTGGGCAAAAAATGACTCATCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTCGCATTTTTGCAGATCTCCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGAGTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAAACACCATAAta                                                                                                                                                                                >  2:797283/1‑237 (MQ=255)
                                                 aTCGAGTTGGACAAAAAATGACTCATCCGTTGGCAAACTGACAATAATAATGCTTTTAATTTTTTTCTTTTTAT‑TTTTGCTTTCGTTTTTTGGCAATTCTTCCGCGGGTTGGGGCGCCGTTTGTAATATCCCGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGAGGGCAGGAAAACCTAAAGAAAAAACCGAATTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATgg                                                                                                                                                                               <  2:1294033/239‑1 (MQ=255)
                                                   cGAGTTGGGCAAAAAATGACTCATCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCa                                                                                                                                                                             >  1:729630/1‑239 (MQ=255)
                                                            cAAAAAATGACTCATCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGCTTTGGTCGAACGGGTAGAAATCACCATAATGGCATTCAAAAc                                                                                                                                                                     >  1:938396/1‑238 (MQ=255)
                                                                          tCCTCTGGCGAACTGAGCATAATAATTCTTTTAATCTTTTTTTGTTTAT‑TTTTGCTTCCGTTTTTTTGCAGATCTTCTGCGGGTTTGTGCGTCGTTTGTAATACCACGTCGAAACTTTCTTCTTCAGCTTGGGCGGGGATGGAATGAAAAACTTAAAAAAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAgcgc                                                                                                                                                     <  2:1388009/239‑1 (MQ=255)
                                                                          tCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAgcgc                                                                                                                                                     >  1:1388009/1‑239 (MQ=255)
                                                                                           cATAATAATGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCAACATAATGGCA‑TCAAAACCCGGAGAGGTCCGCGCGCGGGCCCGCCTGTTTg                                                                                                                                    >  2:656905/1‑239 (MQ=255)
                                                                                             aaataatGCCTTTATTCTTTTTTTGTTAAT‑TTTTCCTTCCGCTTTTTTGCAGTTCTTCTGCGGGTTGGGGGGCCGTTTTAAATACCACGTCAAACCCTTCTTCTTCAGCTTTGGCGGTGAGGGCATCAAAACCTTCAGAAAAAAACGGATTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGc                                                                                                                                  <  2:1322695/238‑1 (MQ=255)
                                                                                               aaaaatccTTTTAACCTTTTTTTCTTAATTTTTTCTTTCCATTTTTTGCATTTCTTCTGCCGATTTGGGGGCGGTTTTAAAAATCCCGCCAAAACCTCCTTCTTCAGTTTGGGCGGTAATGGCATGAAAAACTTAAAAAAAAAACGGATTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAAt                                                                                                                                                                                 <  2:20874/186‑1 (MQ=255)
                                                                                                   tGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGAt                                                                                                                              >  1:1237826/1‑237 (MQ=255)
                                                                                                     ccTTTAATCATTTTCTGCTTAA‑TTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGAt                                                                                                                              >  1:229407/1‑235 (MQ=255)
                                                                                                      ttttagttgttttGTGTTTAA‑TTTTTTTTTACTTTTTTTGCAATTTTTCCGCCGGTTTGTGCGGCTTTTGTAATAACACGTCAAAACCTTTTTCTTCAGTTTTGGGGGTGATGGAATGAAAACCTTAAAAAAAAAACGGATTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGt                                                                                                                         <  2:577667/230‑1 (MQ=255)
                                                                                                        ttAATCATTTTCTGCTTAA‑TTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCaaaa                                                                                                                                                                      >  1:20874/1‑192 (MQ=255)
                                                                                                        ttAATCATTTTCTGCTTAA‑TTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGAt                                                                                                                              >  1:1322695/1‑232 (MQ=255)
                                                                                                        ttAATCATTTTCTGCTTAA‑TTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTaa                                                                                                                       >  2:991678/1‑239 (MQ=255)
                                                                                                                tttCTGCTTAA‑TTTTGCTTCCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGAAGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTAAGAGAAAAACGGATTACCCGCCGAAGTTTTGGTTGAACGAGATGAAAACACCATAATGGCA‑TCAAAAACCGCAGGGGACCGCCCGCGGGCCAGCTAGTTTAGCTGATACTGTAActcataaa                                                                                                               >  2:1485617/1‑234 (MQ=255)
                                                                                                                 ttCTGCTTAA‑TTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATAACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCGTGTTTGGCTGATACTGTAATTCTTCAAt                                                                                                              >  2:265749/1‑239 (MQ=255)
                                                                                                                      cTTAA‑TTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATg                                                                                                                                                                                >  1:301957/1‑169 (MQ=255)
                                                                                                                      cTTAA‑TTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTTGCTGATACTGTAATTCTTCAATGGccc                                                                                                         >  1:450003/1‑239 (MQ=255)
                                                                                                                        tAA‑TTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGtt                                                                                                                                                                                                              >  1:1147327/1‑137 (MQ=255)
                                                                                                                            ttttGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGT‑Aac                                                                                                   >  1:433465/1‑239 (MQ=255)
                                                                                                                                 cTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGCGGGCCGGCTTGTTTGGCTGATACTGTAATTCTTTAATGGCCCGC‑AACACttt                                                                                              >  1:97442/1‑239 (MQ=255)
                                                                                                                                       ttttttgGCAGTTCTTCTGCGGGTTTGGCCGTGTTTTTAAATACCCCGTAAAACCCTTCTTCTTCAGTTTGGGGGGTGAGGGAATCAAAACCTGAAAAAAAAAACGGATTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGT‑AACACTTTTTcgcg                                                                                        <  2:729630/237‑1 (MQ=255)
                                                                                                                                         tttttGCAGATCTTCTGCCGGTTTGGGCGACGTTTGAAATATCACGTCAAAACCTTCTTCTTCAGCTTTGGCGGTGATGGAATGAAAAACTTCAGAAAAAAGCGGATTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGT‑AACACTTTTTcgcgcg                                                                                      <  2:433465/239‑1 (MQ=255)
                                                                                                                                                            ggATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGT‑AACACTTTTTCGCGCGCTTCCGGGGAGATATTAGt                                                                   >  1:741495/1‑239 (MQ=255)
                                                                                                                                                              aTTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGT‑AACACTTTTTCGCGCGCTTCCGGGGAGATATTAGttt                                                                 >  2:196539/1‑239 (MQ=255)
                                                                                                                                                                  tgggACGTTTGTAATATCACGTCAAAACCTTCTTCTTCAGTTTGGGGGGTGAGGGCATGAAAACCTACAGAAAAAAACGGATTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGa                                                                                                                                                                 <  2:1389236/137‑1 (MQ=255)
                                                                                                                                                                  ggCGACTTTTGTAATATCACGTCAAACCCTTCTTCTTCAGCTTTGGCGGTGATGGCATGAAAACCTTCAGAAAAAAACGGATTAcc                                                                                                                                                                                                                        <  2:914877/85‑1 (MQ=255)
                                                                                                                                                                    cGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGGGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGGCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCCGCGCGCGGGCCAGCTTGTTTGGCTGATAATGTAATTCTTCAATGGACCGTAAACAC‑TTTTCGCGCGCTTCCGGGGGGAGAATAGTTTGCTTAt                                                           >  2:96925/1‑239 (MQ=255)
                                                                                                                                                                         tttATAATATCCAGTCAAAACCTTCTTCTTCAGTTTGGGCGGTGATGGCATGAAAACCTTAAGAAAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGc                                                                                                                                           <  2:365874/155‑1 (MQ=255)
                                                                                                                                                                         tttATAATATCACGCAGAACCCTTCTTCTCCAGCTTGGGCGGTGATGGCATGAAAAACTTAAAAAAAAAACGGATTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCaa                                                                                                                                                                        <  2:17991/126‑1 (MQ=255)
                                                                                                                                                                         tttATAATAGCCCGTCAAATCCTTTTTCTTCATTTTGGGGGGGTGTGGCATCAAAAACTAAAAAAAAAAACGGATTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGT‑AACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGc                                                      <  2:741495/239‑1 (MQ=255)
                                                                                                                                                                           tgaaaTACCCCGTCAAACCCTTCTTCTTCATCTTGGGCGGTGATGGCATGAAAACCTAAAAAAAAAAACGAATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCaa                                                                                                                                                                        <  2:264506/121‑1 (MQ=255)
                                                                                                                                                                            gTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTTATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGGAGTTTTGGTCGCACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGTGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGT‑AACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCAc                                                    >  2:1181857/1‑238 (MQ=255)
                                                                                                                                                                            gTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGtt                                                                                                                                                                                                              >  1:914877/1‑86 (MQ=255)
                                                                                                                                                                            gTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAgc                                                                                                                                                       >  1:1389236/1‑140 (MQ=255)
                                                                                                                                                                                  tCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGT‑AACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGAt                                             >  2:1058729/1‑239 (MQ=255)
                                                                                                                                                                                   cACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAaga                                                                                                                                                              >  1:17991/1‑126 (MQ=255)
                                                                                                                                                                                   cACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCt                                                                                                                                 >  1:365874/1‑155 (MQ=255)
                                                                                                                                                                                   cACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAAAGGGTAGAAATCACCATAATg                                                                                                                                                                                >  1:60222/1‑109 (MQ=255)
                                                                                                                                                                                     cGTCGAAACCTTCTTCTTCAGCTTTGGGGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATCATGTAATTCTTCAATGGCCCGG‑AACACTTTTTCGCGCGCTTCCGGGGGGATTTTAGTTTGCTTATTCAGCACGCGTGAAACg                                          >  2:59100/1‑239 (MQ=255)
                                                                                                                                                                                     cGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAaga                                                                                                                                                              >  1:264506/1‑124 (MQ=255)
                                                                                                                                                                                       tcaaaaCCTTTTTCTTCAGTTTGGGCGGTGAGGGCATAAAAAACTTCAGAAAAAAACGGATTACCCGCCGTAGTTTTGGTCGAAc                                                                                                                                                                                                    <  2:489425/82‑1 (MQ=255)
                                                                                                                                                                                       tCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGT‑AACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGt                                        >  1:705623/1‑239 (MQ=255)
                                                                                                                                                                                            aCCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGT‑AACCCTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGAtt                                   >  2:1599604/1‑239 (MQ=255)
                                                                                                                                                                                                 cttcttcAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAAt                                                                                                                                                                                          >  1:489425/1‑85 (MQ=255)
                                                                                                                                                                                                       cAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGaaa                                                                                                                                                                                                                                   >  1:1114671/1‑38 (MQ=255)
                                                                                                                                                                                                       cAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGaaa                                                                                                                                                                                                                                   <  2:1114671/38‑1 (MQ=255)
                                                                                                                                                                                                           tttGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGT‑AACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTg                       <  1:1058729/236‑1 (MQ=255)
                                                                                                                                                                                                                  gtgtTGCCATGAAAAACTACAGAGAAAACCGGATTGCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGT‑AACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTgg              <  1:59100/238‑1 (MQ=255)
                                                                                                                                                                                                                    taTGGCATGAAAACCTCGAAAAAAAAACGGATCACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGT‑AACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCa            <  1:1485617/237‑1 (MQ=255)
                                                                                                                                                                                                                    gagggaaagaaaaaCTTCAAAAAAAAACGAATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGT‑AACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCa            <  1:1608608/228‑1 (MQ=255)
                                                                                                                                                                                                                    gATGGCATGAAAAACTTCAGAAAAAACCGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGT‑AACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCa            <  1:1362137/238‑1 (MQ=255)
                                                                                                                                                                                                                    gATGGCATGAAAAACTTCAGAAAAAAACGATTTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGACCGT‑AACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCa            <  1:96925/238‑1 (MQ=255)
                                                                                                                                                                                                                             cAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGT‑AACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATaaa  >  2:200637/1‑239 (MQ=255)
                                                                                                                                                                                                                                     cggagaAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGT‑AACACTTTTTCGCGCGCTTCCgg                                                                               <  1:1556291/152‑1 (MQ=255)
                                                                                                                                                                                                                                     cAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGT‑AACACTTTTTCGCGCGCTTCCgg                                                                               >  2:1556291/1‑154 (MQ=255)
                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                    
CATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCATCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACTTCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCA‑TCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGT‑AACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAA  >  NC_000913/1383490‑1383948

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑