| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,658,167 | 0 | G | T | 27.5% | 154.8 / 16.7 | 70 | L33F (TTG→TTT) | ynfE | putative selenate reductase, periplasmic |
| Reads supporting (aligned to +/- strand): ref base G (10/40); new base T (19/0); total (30/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.33e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ACCTTATTACTCATACCCTTCTATTGATATGGATTAATAATTCTTAACCCAAAATGGGTAGACTCCCTCTATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTGGGGTGC‑CTGTTCCGTCAACTGTGGTAGCCGC‑TGTGCACTTCGTC‑TACA‑TGTTAAAGATAATGAAGTGACCTGGGTGGAAACTGACAATACCGGCAG‑CGATGAGTACGGCAACCATCAGGTACGCGCCTGTTTGCGCGGTCGCTCCATCCGCCGGCGTATTAATCATCCCGATCGCTTG > NC_000913/1657933‑1658404 | aCCTTATTACTCATACCCTTCTATTGATATGGATTAATAATTCTTAACCCAAAATGGGTAGACTCCCTCTATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTTCCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑Gt < 2:42089/239‑1 (MQ=255) ccTTATTACTCATACCCTTCTATTGATATGGATTAATAATTCTTAACCCAAAATGGGTAGACTCCCTCTATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTTTTTTcccgt > 1:2056791/1‑236 (MQ=255) ccTTATTACTCATACCCTTCTATTGATATGGATTAATAATTCTTAACCCAAAATGGGTAGACTCCCTCTATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGc > 2:2428178/1‑235 (MQ=255) ttaCTCATACCCTTCTATTGATATGGATTAATAATTCTTAACCCAAAATGGGTAGACTCCCTCTATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTcttttcc‑cttttcc > 1:1556733/1‑238 (MQ=255) aCCCTTCTATTGATATGGATTAATAATTCTTAACCCAAAATGGGTAGACTCCCTCTATTGTTAGCGCGCTAAATATTCAATATATAAAATTTTATATAAAGATAAAGAACAGGGAGTGAGTTATGTCAAAAAATGAACGAATGGTGGGCATCAGCCGCAGAAAACTCGTTAAATTTACCGCGATAGGTTATCTGGCGCTGGCGGCAGGCGGG‑TTTATTTTTGCC‑GTTTCCCTTgccaaa > 2:1653539/1‑235 (MQ=255) tCTATTGATATGGATTAATAATTCTTAACCCAAAATGGGTAGACTCCCTCTATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTTTTTTCC‑GTTTACCCTTCGCAATgcagc > 1:2175190/1‑239 (MQ=255) tCTATTGATATGGATTAATAATTCTTAACCCAAAATGGGTAGACTCCCTCTATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATgcagc < 2:2299844/239‑1 (MQ=255) cTATTGATATGGATTAATAATTCTTAACCCAAAATGGGTAGACTCCCTCTATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTTTTTTCC‑GTTTTACCTCCGCAAAgcagca > 2:547133/1‑239 (MQ=255) aTTGATATGGATTAATAATTCTTAACCCAAAATGGGTAGACTCCCTCTATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATgcagcagc < 2:1404388/239‑1 (MQ=255) atGGATTAATAATTCTTAACCCAAAATGGGTAGACTCCCTCTATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTTTTTTTC‑GTTTTCCCCGTGCGATTCCGCAACAC‑Cggg > 2:420614/1‑238 (MQ=255) ttAATAATTCTTAACCCAAAATGGGTATATTCTCTCTATTTTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATATAGAACAGGGAGTGAGTTATGTACAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGGTCTCTGGCGCTGGCTGCAGGC‑GGCCTTTTCTTT‑CC‑GTTTACCCCGCGCACAGCATCAGCAG‑CAGtgtag > 2:2091666/1‑234 (MQ=255) taatTCTTAACCCAAAATGGGTAGACTCCCTCTATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGc < 1:2452751/239‑1 (MQ=255) tCTTAACCCAAACTGGGTAGACTCCCTCTATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTTTTTGCC‑GCTTACCCTTCGGCATTCAGCAGCAG‑CGGGACAACAGGCCcgc > 2:672740/1‑239 (MQ=255) ccTCTATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTgg < 1:1919845/230‑1 (MQ=255) tATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATACAACGATAAAGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTCCCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATgcagcagc < 1:2176100/192‑1 (MQ=255) aGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTTCCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAATGGTCTGGGGTGG‑CTGGTCCGCCa > 1:2032888/1‑235 (MQ=255) gcgcgcTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATgcagcagc < 1:1544207/184‑1 (MQ=255) gcgcgcTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATgcagcagc > 2:1544207/1‑184 (MQ=255) gcgcTAAATATTCAATATATAAACTTTTATATAACGATAAAGAAAAGGGAGGGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTCAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑ATTTTTTTTTGC‑GTTTTCCCTGTGGCAAGCAGCAGAAG‑Cgggccaa > 2:2176100/1‑187 (MQ=255) gcTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTGGGGTGC‑CTGTTCCGTCAACTGTGGt < 1:420614/238‑1 (MQ=255) cAATATATAAACTTTTATATAACGATAAAGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTGGGGTGC‑CTGTTCCGTCAACTGTGGTAGCCGC‑TGTGc < 1:2428178/239‑1 (MQ=255) atatatAAACTTTTATATAACGATAAAGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTTTTTGCC‑Gt > 2:402335/1‑146 (MQ=255) atatatAAACTTTTATATAACGATAAAGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTTCC‑GGTTTACCTTCGCCATGCCACCGCAGCCGGGACAAACGACCGGCGAAAAAG‑GGGCTGGGGGGCGCGGTTCGGTAAACTGTGGTAGcgcacgcgc > 2:1574805/1‑230 (MQ=255) atatatAAACTTTTATATAACGATAAAGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑Gt < 1:402335/146‑1 (MQ=255) tatataAACTTTTATATAACGATAAAGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTGGGGTGC‑CTGTTCCGTCAACTGTGGTAGCCGC‑TGTGCACt < 1:547133/239‑1 (MQ=255) aCTTTTATATAACGATAAAGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTGGGGTGC‑CTGTTCCGTCAACTGTGGTAGCCGC‑TGTGCACTTCGTC‑Ta < 1:1653539/239‑1 (MQ=255) cTTTTATATAACGATAAAGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTGGGGTGC‑CTGTTCCGTCAACTGTGGTAGCCGC‑TGTGCACTTCGTC‑TAc < 1:1469231/239‑1 (MQ=255) cTTTTATATAACGATAAAGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTGGGGTGC‑CTGTTCCGTCAACTGTGGTAGCCGC‑TGTGCACTTCGTC‑TAc < 1:1421499/239‑1 (MQ=255) ttATATAACGATAAAGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTTCC‑GGTTACCCTTCGCCATGCATCAGCAG‑CGGGGCAACAAGCCCCCGGAAAAAAGGGCGTGGGGGG‑CTGTTCCGTCAACAGTGGGAGGCGCGTGTGCAGTTctctaacat > 2:1714545/1‑231 (MQ=255) ataACGAAAAAGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTGGGGTGC‑CTGTTCCGTCAACTGTGGTAGCCGC‑TGTGCACTTCGTC‑TACA‑TGTTaa < 1:1672083/239‑1 (MQ=255) cGATAAAGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTTCC‑GTTTACCCTGCGCAATGcagcagcag > 1:1299974/1‑150 (MQ=255) cGATAAAGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATGcagcagcag < 2:1299974/150‑1 (MQ=255) cGATAAAGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑ATTTTTTTTTCC‑GCTTACCCCTCGCCAAGCAGCAGCAG‑CGGTAAAAACGGCCCGCGGAAAAGGGGGCTGGGGTGC‑CTGTTTCGTTTACCGGGGTAGGCGC‑TGTGTACTCTGTC‑TCTA‑TTTTTAAGag > 2:2568681/1‑238 (MQ=255) aGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTGGGGTGC‑CTGTTCCGTCAACTGTGGTAGCCGC‑TGTGCACTTCGTC‑TACA‑TGTTAAAGATAATGaa < 1:2182105/239‑1 (MQ=255) ggAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTTCC‑GTTTACCCCGCGCAATGCAGCAGCAG‑CGGCACCACAAGCCCGCGGAAAAGTGGTCAGGGGGGG‑CCGTTCCGTGAACTATGGGAGCCGC‑CTTGCACTTTGTC‑TACC‑GGGTAAAGATAATGacatga > 2:1230672/1‑231 (MQ=255) gagtgagtTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTGGGGTGC‑CTGTTCCGTCAACTGTGGTAGCCGC‑TGTGCACTTCGTC‑TACA‑TGTTAAAGATAATGaa < 1:1092478/231‑1 (MQ=255) gagtgagtTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTGGGGTGC‑CTGTTCCGTCAACTGTGGTAGCCGC‑TGTGCACTTCGTC‑TACA‑TGTTAAAGATAATGAAGTGAcc < 1:2258841/237‑1 (MQ=255) gagtTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTGGGGTGC‑CTGTTCCGTCAACTGTGGTAGCCGC‑TGTGCACTTCGTC‑TACA‑TGTTAAAGATAATGAAGTGACCTggg < 1:672740/237‑1 (MQ=255) gattATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGCACCCTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTGGGGTGC‑CTGTTCCGTCAACTGTGGTAGCCGC‑TGTGCACTTCGTC‑TACA‑TGTTAAAGATAATGAAGTGACCTGGGTgg < 2:2056791/237‑1 (MQ=255) agtTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCcgcg < 1:2388980/149‑1 (MQ=255) ttATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTgg < 1:724195/161‑1 (MQ=255) aTGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTTCC‑GTTTACCCTGCGCAATgcagcagc > 1:1319955/1‑125 (MQ=255) aTGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATgcagcagc < 2:1319955/125‑1 (MQ=255) tGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTTCC‑GTTTACCCTGCGCAATGCAGCCGCAG‑CGGGACAACAAGTCCCCGGAAAAGTGGTCTGGGGGGG‑CCGTTCCGTCTACAGCGGTAGCCCC‑TGTTGCCCTCGTCTTACA‑T‑TTAAAGTTACTGATGTGACCTggg > 2:1092478/1‑231 (MQ=255) gTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTTTTTTCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGGACAACAGGCCCGCGGAAAAAGGGTCTGGGGGGC‑CTTGTCCGGCACCGGGGGGAGCCCC‑CGGGGACTTCGGC‑TTCACGGTTAAAGAT‑ATTAAGGGGCCTTGGGGGaaaact > 2:808677/1‑236 (MQ=255) gTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTGGGGTGC‑CTGTTCCGTCAACTGTGGTAGCCGC‑TGTGCACTTCGTC‑TACA‑TGTTAAAGATAATGAAGTGACCTGGGTGGAAACTg < 1:1674831/239‑1 (MQ=255) aaaaaTGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTTTTTGCCGGTTTCCCCTCCCCAA‑GCAGCCGCCG‑CGGGACAACAGGGCCCCGGAAAAATGGt > 2:2388980/1‑149 (MQ=255) gAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTGGGGTGC‑CTGTTCCGTCAACTGTGGTAGCCGC‑TGTGCACTTCGTC‑TACA‑TGTTAAAGATAATGAAGTGACCTGGGTGGAAACTGACAATACCgg < 1:808677/239‑1 (MQ=255) aCGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTgggg < 1:775690/147‑1 (MQ=255) gtggGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTTTTTTCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGGAAAAGGGGGCTGGGGTGC‑CTGTTCCCTCAACTGTGGTAGCCGC‑TGTGCACTTCGTCGTTCA‑‑GTTTAAGATAATGAAGTGGCCCGGGGGGAAAAAGAGAAAAACGGCGG‑CGAGGa > 2:373337/1‑239 (MQ=255) ggCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑ATTTTTTTTTCC‑GTTTAACCTTCTCAATGCAGCAGCAA‑GGGGACAAAAGGGCCGCGGAAAAGTGGTCCGGGGGGG‑CTGGTcc > 2:775690/1‑147 (MQ=255) gCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTTTTTTCC‑CGTTACCCCCCCCAATTCAGCCGCCC‑CGGTacaa > 1:1180714/1‑101 (MQ=255) gTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTGGGGTGC‑CTGTTCCGTCAACTGTGGTAGCCGC‑TGTGCACTTCGTC‑TACA‑TGTTaa < 1:2076496/167‑1 (MQ=255) aTCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTGGGGTGC‑CTGt < 1:2530132/118‑1 (MQ=255) aCCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAGTGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTGGGGTGC‑CTGTTCCGTCAACTGTGGTAGCCGC‑TGTGCACTTCGTC‑TACA‑TGTTAAAGATAATGAAGTGACCTGGGTGGAAACTGACAATACCGGCAG‑CGATGAGTACGGCAACCATCAGGTACGCGCCTGTTTgcg < 1:2227779/239‑1 (MQ=255) ccGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTTCC‑GTTTTTCCTGCGCAAATCCGCAGCAG‑CGGGACAACAGGGCCGCGAAAAAATGGGCTGGGGGGC‑CCTGTCCGGTAACTGGGGGAGCCGC‑CGGGCACTTCGTC‑TTAA‑TGTTTAAAATAATgta > 2:2076496/1‑165 (MQ=255) gcgATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTGGGGTGC‑CTGTTCCGTCAACTGTGGTAGCCGC‑TGTGCACTTCGTC‑TACA‑TGTTaa < 1:1809806/155‑1 (MQ=255) aTAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTTTTTTCC‑GGTTACCCTGCGCAATGCAGCAGCAG‑CGGGACAACAGGCCCGCGAAAAAGTGGGCTGGGGGGG‑CTGTTCCGTCaaat > 2:2530132/1‑116 (MQ=255) ggTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTGGGGTGC‑CTGTTCCGTCAACTGTGGTAGCCGC‑TGTGCACTTCGTC‑TACA‑TGtt < 1:1329466/147‑1 (MQ=255) ttCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCCGGTTTACCC‑GCCCCATTCAGCAGCAG‑CGGTGCAACAAGCCCCCCGAAAAGGGGTCTGGGGGGC‑CTGTTCCGTCAAATGGGGTAGCCGC‑CGTGCCCTTCGGC‑TGCA‑TGTTAAAGATGATGAAATGACCTGGGTGGTAACTGACCAAACCGGCAGCCGACG‑GTAATGCAACCAACCGGAGCGCGCCTGTGTGTACGGTCGCttc > 2:146597/1‑236 (MQ=255) ctctGGCGCTGGCTGCAGGC‑GG‑TTTTTTTTTTCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGGAAAAGTGGGCTGGGGGGC‑CTGTTCCGTCAACTGTGGGAGCCGC‑CGTGCACTTCGTC‑TCCA‑TGTTAAAGATAATGaa > 2:1809806/1‑155 (MQ=255) tGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTGGGGTGC‑CTGTTCCGTCAACTGTGGTAGCCGC‑TGTGCACTTCGTC‑TACA‑TGTTAAAGATAATGAAGTGACCTGGGTGGAAACTGACAATACCGGCAG‑CGATGAGTACGGCAACCATCAGGTACGCGCCTGTTTGCGCGGTCGCTCCATccgc < 1:373337/239‑1 (MQ=255) gtctgCAGGC‑GT‑GTTGTCTTGGCC‑GTTTACCCTGGGCAATGCAGCAGCAG‑AGGTACAACAGGCCCGCGAAAAAGTGGTCTGGGGTGC‑CTGTTCCGTCAACTGTGGTAGCCGC‑TGTGCACTTCGTC‑TACA‑TGTTAAAGATAATGAAGTGACCTGGGTGGAAACTGACAATACCGGCAG‑CGATGAGTACGGCAACCATCAGGTACGCGCCTGTTTGCGCGGTCGCTCCATCCGCCGGCGt < 2:376755/236‑1 (MQ=255) tgCAGTC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTGGGGTGC‑CTGTTCCGTCAACTGTGGTAGCCGC‑TGTGCACTTCGTC‑TACA‑TGTTAAAGATAATGAAGTGACCTGGGTGGAAACTGACAATACCGGCAG‑CGATGAGTACGGCAACCATCAGGTACGCGCCTGTTTGCGCGGTCGCTCCATCCGCCGGCGTATTa < 2:2175190/239‑1 (MQ=255) gtccggC‑GT‑TTTGTCTTTGCC‑GTTTACCCTGCGCAATGCAGCGGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTGGGGTGC‑CTGTTCCGTCAACTGTGGTAGCCGC‑TGTGCACTTCGTC‑TACA‑TGTTAAAGATAATGAAGTGACCTGGGTGGAAACTGACAATACCGGCAG‑CGATGAGTACGGCAACCATCAGGTACGCGCCTGTTTGCGCGGTCGCTCCATCCGCCGGCGTATTa < 2:1457113/235‑1 (MQ=255) cAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTGGGGTGC‑CTGTTCCGTCAACTGTGGTAGCCGC‑TGTGCACTTCGTC‑TACA‑TGtt < 1:2406794/128‑1 (MQ=255) ttCTTTGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTGGGGTGC‑CTGTTCCATCAACTGTGGTAGCCGC‑TGTGCACTTCGTC‑TACA‑TGTTAAAGATAATGAAGTGGCCTGGGTGGAAACTGACAATACCGGCAG‑CGATGAGTACGGCAACCATCAGGTACGCGCCTGTTTGCGCGGTCACTCCATCCGCCGGCGTATTAATCATCCCGATc < 1:2091666/239‑1 (MQ=255) cTTTGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTGGGGTGC‑CTGTTCCGTCAACTGTGGTAGCCGC‑TGTGCACTTCGTC‑TACA‑TGTTAAAGATAATGAAGTGACCTGGGTGGAAACTGACAATACCGGCAG‑CGATGAGTACGGCAACCATCAGGTACGCGCCTGTTTGCGCGGTCGCTCCATCCGCCGGCGTATTAATCATCCCGATCGc < 1:376280/239‑1 (MQ=255) tGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTGGGGTGC‑CTGTTCCGTCAACTGTGGTAg < 1:958034/88‑1 (MQ=255) tGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTGGGGTGC‑CTGTTCCGTCAACTGTGGTAg > 2:958034/1‑88 (MQ=255) tGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTGGGGTGC‑CTGTTCCGTCAACTGTGGTAGCCGC‑TGTGCACTTCGTC‑TACA‑TGTTAAAGATAATGAAGTGACCTGGGTGGAAACTGACAATACCGGCAG‑CGATGAGTACGGCAACCATCAGGTACGCGCCTGTTTGCGCGGTCGCTCCATCCGCCGGCGTATTAATCATCCCGATCGCTTg > 1:877590/1‑239 (MQ=255) | ACCTTATTACTCATACCCTTCTATTGATATGGATTAATAATTCTTAACCCAAAATGGGTAGACTCCCTCTATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAGTGAGTTATGTCCAAAAATGAACGAATGGTGGGCATCAGCCGCAGAACACTCGTTAAATCTACCGCGATAGGTTCTCTGGCGCTGGCTGCAGGC‑GG‑TTTTTCTTTGCC‑GTTTACCCTGCGCAATGCAGCAGCAG‑CGGTACAACAGGCCCGCGAAAAAGTGGTCTGGGGTGC‑CTGTTCCGTCAACTGTGGTAGCCGC‑TGTGCACTTCGTC‑TACA‑TGTTAAAGATAATGAAGTGACCTGGGTGGAAACTGACAATACCGGCAG‑CGATGAGTACGGCAACCATCAGGTACGCGCCTGTTTGCGCGGTCGCTCCATCCGCCGGCGTATTAATCATCCCGATCGCTTG > NC_000913/1657933‑1658404 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |