| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,930,718 | 0 | T | G | 28.2% | 186.5 / 14.0 | 79 | T126P (ACC→CCC) | ravA | hexameric AAA+ MoxR family ATPase, putative molecular chaperone |
| Reads supporting (aligned to +/- strand): ref base T (9/47); new base G (22/0); total (32/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.42e-12 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGATTGTCGTTTTCATCCTGTTGACTGGTCAGCATGGAGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTAAACGTTCAT‑AGCGCCCTTCATCTTTTA‑GCGCCTGAATAGA‑AAGGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACTTTTGGCAATACCTGGCG > NC_000913/3930495‑3930954 | ggATTGTCGTTTTCATCCTGTTGACTGGTCAGCATGGAGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCgg > 1:1435870/1‑239 (MQ=255)ggATTGTCGTTTTCATCCTGTTGACTGGTCAGCATGGAGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATCGCCgg < 2:1711808/239‑1 (MQ=255) gTCGTTTTCATCCTGTTGACTGGTCAGCATGGAGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑g < 1:1629489/239‑1 (MQ=255) tCCTGTTGACCTATCAGCATGAAGCGGAAATTCGCTTTAACCTCCCCTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACGGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGAt < 2:1057757/239‑1 (MQ=255) ccTGTTGACTGGTCAGCATGGAGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGGATTAAGAATTTCCGGGCCC‑GCTTTCCCGa > 1:212294/1‑237 (MQ=255) aGCATGGAGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCACGGGATTAAGAATTTCCGGGCCC‑GCTTTCCCGCTCTCATCCACAAAGA‑c > 1:1537031/1‑239 (MQ=255) aGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAAAATTGCCGGGGCC‑GCTTTTCAGAACTCCTTCCGAAAAACCAAttt > 1:604577/1‑238 (MQ=255) gCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGGTAGCAAGGGATTAAGAATTGTCCGGGCC‑GCCTTCCCGCTCTCATCCCAAAAGA‑CAAta > 2:1461594/1‑234 (MQ=255) aaaTTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGGATTAAGAAATTCCGGGCCC‑GCTCTCTCGATCTCTTCCAGAGAAA‑CAAattttcttt > 2:2141065/1‑232 (MQ=255) aTTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGGGTGCAAGGGATTAAGAAATTTCGGGGCC‑CCTTTCCAGATCTCATCCAGAAAGA‑CAAATTTTG‑CTTccc > 1:2017091/1‑238 (MQ=255) cGCTGTATCCTGGCCTTCATCTCCACACAGACGAACCCGACGGGGTTCATATAACGTCTCAAGCCTCTGGTCGGCTGCCGGCGGCTCTTTGGAGGCCGCCCCCCGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGGGGTGAGCAAGGTATTAAGAATTCCCGGGCCC‑GCTTTCCAGATCTCACCCAGAAAGA‑CAATTTCTG‑CTTCCgg < 2:2555237/237‑1 (MQ=255) accTGCACTTTACCTAACCCCAGCCGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCg < 2:2521582/228‑1 (MQ=255) ccTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCg < 1:135589/239‑1 (MQ=255) ccTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCg < 2:143381/239‑1 (MQ=255) cACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGGATTTATAAATTCCCGGCCC‑GCTTTCCAGATCTCCCCCAGAAAGA‑CAAATTCTT‑CCTCCCG‑CACGG‑AACCg > 2:804879/1‑235 (MQ=255) tttATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTTTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTa < 1:2368158/239‑1 (MQ=255) tttATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTa < 1:1062567/239‑1 (MQ=255) tttATCTAACCACAGACGAAGCAGCCTGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGTAGCGCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAGCTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTa < 2:617192/239‑1 (MQ=255) ttATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTaa < 1:2620860/239‑1 (MQ=255) ttATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTaa < 2:1898916/239‑1 (MQ=255) tATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTTGGCAATGGATTAAAAATTGACCGGCCC‑CCTCTCCAAATGTCATCCCGAAAGA‑CACATTCTGCCTCCCGC‑CGGGT‑AACCACG‑GGtcta > 2:1062567/1‑236 (MQ=255) tATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGccc > 1:571042/1‑179 (MQ=255) tATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGccc < 2:571042/179‑1 (MQ=255) tATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTa < 2:442905/237‑1 (MQ=255) tATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTa > 1:442905/1‑237 (MQ=255) tATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGGATTAAGAATTTCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGG‑AAcc > 1:2521582/1‑229 (MQ=255) tATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGGATTAAGAATTGCCGGGGCC‑GCTTTCCAGATCTCATCCCGAAAGA‑CAATTTTTG‑CTTCCGG‑CCGGT‑AACCGCT‑GGGTaa > 1:1717666/1‑238 (MQ=255) tATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTCCGGAACTGGCGCTCGTTAATGGCGGTCAGCAAGCTATTAAGAAATTCCGGGGCC‑GCGTTCCAGGTGTCCTCCCATAACG‑CAATTTTTT‑CTGCTCG‑CAGGT‑AACCGcgtgcttc > 2:2553719/1‑231 (MQ=255) aCCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGGGCAAGGTATTAAGAATTGCCGGGCCC‑CCTTTCCAGATCTCATCCCGAAAAA‑CAATTTTTG‑CTTCCGG‑CAGGG‑AACCGCT‑GGGTAAACGTTCa > 1:689715/1‑239 (MQ=255) caGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGGGCAAGGGATTAAGAATTGTCGGGCCC‑GCCTTCCAGATCTCATCCAAGAAGA‑AAAATTCTT‑CCTCCTG‑CCGGG‑AACCCCC‑GGCTAAAAGTTCAT‑at > 2:1443656/1‑237 (MQ=255) aTCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACTGCT‑GGTTAAACGTTCAT‑AGCGCCCTTc < 1:334746/239‑1 (MQ=255) aTGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTTCAGATCTCATCCAGAAAGA‑CAATTTTTG‑CTTCCGG‑CCGGT‑AACTGCC‑GGGTTAACGTTCCT‑AGCGCCCCTCATCttt > 2:334746/1‑239 (MQ=255) tGCGGTCATATAACGCTTCCAGGCTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTAAACGTTCAT‑AGCGCCCTTCATCtttt < 1:2375054/239‑1 (MQ=255) tGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTAAACGTTCAT‑AGCGCCCTTCATCtttt < 1:837985/239‑1 (MQ=255) ggTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGGTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTAAACGTTCAT‑AGCGCCCTTCATCTTTTA‑g < 1:1686294/238‑1 (MQ=255) tCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTAAACg < 1:1362429/212‑1 (MQ=255) cATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTAAACGTTCAT‑AGCGCCCTTCATCTTTTA‑gcgc < 1:878549/238‑1 (MQ=255) cATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTAAACGTTCAT‑AGCGCCCTTCATCTTTTA‑GCGcc < 1:2141065/239‑1 (MQ=255) atatAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGt < 1:2756277/204‑1 (MQ=255) atatAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTAAACGTTCAT‑AGCGCCCTTCATCTTTTA‑GCGCCt < 1:1872217/239‑1 (MQ=255) atatAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTAAACGTTCAT‑AGCGCCCTTCATCTTTTA‑GCGCCt < 1:495407/239‑1 (MQ=255) tataACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTcc < 1:52413/154‑1 (MQ=255) gattCCAGGCTGGTGTATGCTTACGTCAGCTCGTTGGGAGCCGGCACCAGCAGACGCATCGGGATTGTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCAC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTAAACGTTCAT‑AGCGCCCTTCATCTTTTA‑GCGCCTGAATAGa < 2:1441892/237‑1 (MQ=255) cTTCCAGATTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTTTAATAAGTATTTAAAACTGACCGGCCC‑GCGTCCCCGATCTCATTCAGAAAGA‑CAAATTTTT‑TTCTCGG‑CAGGG‑TACCGCT‑CGGTTAACGTTCCTAAGGCCCCTTCA‑CTTTTC‑GCGCCTGacatgaa > 2:497533/1‑233 (MQ=255) ttCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGc < 1:2535321/132‑1 (MQ=255) tCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGTAAGGGATTAAGAATTGCCGGGCCC‑GCCTTCCAGATCTCATCCAGAAAGA‑CAATTTTTG‑TTTCCGC‑CCGGA‑GATCGCC‑GGTTCTAAATTCAT‑AACGTCCCTCCTCTTATC‑TGGCCTCAATAgcata > 2:541969/1‑235 (MQ=255) ccAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGGATTAAGAATTTCCGGGCCC‑CCTTTTCAGATCCCATc > 2:52413/1‑154 (MQ=255) ccAGACTACTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCAACCAGCAGACGCATCGGGATTTTTTCCACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGCAAGCGAAGGATTTAAAAATGAGGAGCCCGGTTTTCCAG‑TCTCCACCCGAAAGA‑CAAATTCTT‑ACTCCGGACAGGT‑‑ACAGCT‑GGGTAAAAGTTCAC‑AACGCCCTTCATCTTTTT‑GAGCCCGAAATGa‑aaca > 2:1354248/1‑237 (MQ=255) ctgTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGGAAGGGATTTAGAAATGCCGGGCCC‑Gcc > 2:2535321/1‑131 (MQ=255) tCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGAATTAAAAATTACCGGGCCC‑GCTTTTCAGAACTCATACCGAGAAA‑CAATTTCTG‑CTTCCGG‑GAGGT‑AACCCCT‑CGGTACACGATCAT‑AGCGGCCTTCATCTTTTT‑GCGCCTCAATAGATATGGGGACCaaaaa > 2:231175/1‑239 (MQ=255) ttCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTAAACGTTCAT‑AGCGCCCTTCATCTTTTA‑GCGCCTGAATAGA‑AAGGGGACCAAAAActtctt < 1:804879/239‑1 (MQ=255) cTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTTAAAAATTCCGGGACC‑GCCTTCCAGATCTCCTCCAGGAAGA‑CAATTTTTT‑CTTCCCG‑CCGGG‑AACCGCTGGGTTAACCGTT‑AT‑AAGCCCCTTCATCGTTTA‑TGGGCTTGATAGA‑AAAGGGACCAAAAACTTCCTCCTGCGCgg > 2:432652/1‑239 (MQ=255) tCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTAAACGTTCAT‑AGCGCCCTTCATCTTTTA‑GCGCCTGAATAGA‑AAGGGGACCAAAAACTTCTTCCGGCGt < 1:231175/236‑1 (MQ=255) tCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGGGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTTGGCAAGGGAATAAAAATTTCCGCGCCC‑GCTTTTCAGGTGTCATCCAGGAAGA‑AAATATCTT‑CTTGTCG‑GAGGG‑GACCGCG‑GATGACACGTTTAT‑AACGGCCTTCATCTTTTC‑GCGCCGGAATAGA‑AAAAGGCGCAAAAACAACGTCCGGCGCGga > 2:1933735/1‑239 (MQ=255) tGGAAGCCGACACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACAGTTGCGGAACTGGCGCTCGTTAAAGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTAAACGTTCAT‑AGCGCCCTTCATCTTTTA‑GCGCCTGAATAGA‑AAGGGGACCAAAAACTTCTTCCGGCGTGGAGAAg < 2:2687812/239‑1 (MQ=255) ccgccACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTAAACGTTCAT‑AGCGCCCTTCATCTTTTA‑GCGCCTGAATAGA‑AAGGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCggg < 1:428986/237‑1 (MQ=255) ccgccACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTAAACGTTCAT‑AGCGCCCTTCATCTTTTA‑GCGCCTGAATAGA‑AAGGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCggg < 1:432652/237‑1 (MQ=255) cagcagACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTAAACGTTCAT‑AGCGCCCTTCATCTTTTA‑GCGcc < 1:68030/184‑1 (MQ=255) cagACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGGGTTAAAAATTGACGGGCCC‑CCCTTCCAAGTCTCATTCCGAAAGA‑AAATTTTTT‑CCTCCTG‑CAGGTAAACCCCT‑GGTAAAAGGTT‑AA‑AACGACCATCGTTTTTTAGGCGCCTAAATGAA‑AAGGGGACAAAAAAC‑TCTTCCCGCGGCGTGAAGGGGGtcgttcagaatt > 2:393074/1‑229 (MQ=255) cGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTAAACGTTCAT‑AGCGCCCTTCATCTTTTA‑GCGCCTGAATAGA‑AAGGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGTCATCAGATATTCa < 1:1443656/237‑1 (MQ=255) aTCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGGAAGGGATTAAGAATTTCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTTTG‑CTTCCGG‑CCGGT‑AACCGCC‑GGGTAAACGATCAT‑AGCGCCCTTCATCTTTTT‑GCGCCCGAATATa‑aa > 2:68030/1‑184 (MQ=255) ggATTGTTTCAGCGTGTGGAGCGTTGCTGAACTGGCGCTGTTTAATGGCGGTGAGCAAGGTATTAAGAAGTGCCGGGCCC‑GCGTGCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CGTCCGG‑CAGGT‑AACCGCT‑GGTTAAACGTTCAT‑AGCGCCCTTCATCTTTTA‑GCGCCTGAATAGA‑AAGGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGTCATCAGATATTCAAAcgagcg < 2:848401/238‑1 (MQ=255) ggATGTTATCTACGTGTGCATCATTGCGGAACTGGCTCGCGATAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGACCC‑TGTTTCCAGAACTCAACCCGAAAGA‑CACTTTCTA‑CTTCCGG‑CAGGT‑AACCGCG‑GGTTAAACGTTCAT‑AGCGCCCTTCAACTTTTA‑GCGCCTGAATAGA‑AAGGGGACCAAAAACTTCTTCCGGCGTGGAGAAACGGGTCATCAGATTTTCAAgcgggcgg < 2:604577/239‑1 (MQ=255) gATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTAAACGTTCAT‑AGCGCCCTTCATCTTTTA‑GCGCCTGAATAGA‑AAGGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGTCATCAGATATTCAAACGCGCgg < 1:2519559/238‑1 (MQ=255) gtgtGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGTCGGGc < 2:1704670/65‑1 (MQ=255) gtgtGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTaa < 2:1834634/126‑1 (MQ=255) tgCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGGATTAAGGATTGCCGGGCCC‑GCCTTTCAAATGGCATCCAAAAAGA‑CAAATTTTG‑CTTTCGG‑CAGGG‑AACCGCC‑GGTGTAACCTTCAT‑AGCGCCCTTTATCTTTTT‑CGCCCCGAAAAGA‑AATGGGAGCAAAAACTTCTTTCCGCGCGGAGAACCGGGGCACAAGACATTCACAAGCGCGCGCCATCTGAGAGGGGa > 2:2529733/1‑239 (MQ=255) ttGCGGAACTGGCGCTCGTTAATGGCGGTGAGCCAGGGAATAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTTTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTAAAACGTCAT‑AGCGCCCTTCCTCTTTTA‑TCGCCTTCATAGA‑AAAGGGACAAAAAAATTCTTCCACCGTGGGTCAGTGGGGCATCAAAAATTTAAAACCGCGGGCATTCTCAAAggtggatattta > 2:2084997/1‑229 (MQ=255) ttGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGGATTTAGAATTTCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTTTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGGTAAACGTTCAT‑Ag > 1:1834634/1‑126 (MQ=255) ttGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGGATTTAGAATTGCCGGGCCC‑GCTTTccc > 1:1704670/1‑64 (MQ=255) tGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTAAACGTTCAT‑AGCGCCCTTCATCTTTTA‑GCGCCTGAATAGA‑AAGGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCgg < 1:2363082/191‑1 (MQ=255) cTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTAAACGTTCAT‑AGCGcc < 1:2199705/122‑1 (MQ=255) gTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTAAACGTTCAT‑AGCGCCCTTCATCTTTTA‑GCGCCt < 1:183307/131‑1 (MQ=255) tAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTAAACGTTCAT‑AGCGCCCTTCATCTTTTA‑GCGCCTGAATAGA‑AAGGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACtt < 1:38803/239‑1 (MQ=255) tAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTAAACGTTCAT‑AGCGCCCTTCATCTTTTA‑GCGCCTGAATAGA‑AAGGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACtt < 1:2298083/239‑1 (MQ=255) ggTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTAAACGTTCAT‑AGCGCCCTTCATCTTTTA‑GCGCCTGAATAGA‑AAGGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACTTTTGGCa < 1:497533/238‑1 (MQ=255) gTGAGGAAGGGATTAAGAAATGCCGGGCCC‑GCTTTCCAGATCTCATCCCGAAAAA‑AAAATTTTG‑CTTCCGG‑CAGGG‑AAACGCT‑GGGTAAACGTTCAT‑AGCGCCCTTCCTCTTTTA‑GCGCCTGAATAGA‑AAg > 2:183307/1‑131 (MQ=255) aaGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTAAACGTTCAT‑AGCGCCCTTCATCTTTTA‑GCGCCTGAATAGA‑AAGGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACTTTTGGCAATACCTgg < 1:1613936/239‑1 (MQ=255) aaGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTAAACGTTCAT‑AGCGCCCTTCATCTTTTA‑GCGCCTGAATAGA‑AAGGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACTTTTGGCAATACCTg < 1:1461594/238‑1 (MQ=255) tATTAAGAATTGCCGGGCCC‑GCTTGCCAGATCTCATCCAGAAAGT‑GCATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTAAACGTTCAT‑AGCGCCCTTCATCTTGTA‑GCGCCTGAATAGA‑AAGGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCTATCAAACTTTTGGCAATACCTGGCg < 2:1435870/237‑1 (MQ=255) | GGATTGTCGTTTTCATCCTGTTGACTGGTCAGCATGGAGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGA‑CAATTTCTG‑CTTCCGG‑CAGGT‑AACCGCT‑GGTTAAACGTTCAT‑AGCGCCCTTCATCTTTTA‑GCGCCTGAATAGA‑AAGGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACTTTTGGCAATACCTGGCG > NC_000913/3930495‑3930954 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |