| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,846,683 | 0 | G | T | 31.8% | 127.7 / 16.1 | 66 | Q244K (CAA→AAA) | hycD | hydrogenase 3, membrane subunit |
| Reads supporting (aligned to +/- strand): ref base G (3/42); new base T (20/1); total (23/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.58e-13 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CCTAATTTTTCTTCAGACATGCTCAAACTCTCTTTAATCACGCCGCCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCACGGAATAAACACCCCGAC‑GAACATCTGCAACACCACCAGCTG‑T‑TTCAGGCTGATACCCCATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAA‑CGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAGCGCCAGTACCAGCGGGATGCTCTGGCTCAGCGGC > NC_000913/2846452‑2846912 | ccTAATTTTTCTTCAGACATGCTCAAACTCTCTTTAATCACGCCGCCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCAc < 1:1203450/239‑1 (MQ=255) tttttCTTAAGACATGCTCAAACACTCTGTAATCACGCCGCCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGGCGCAGGCGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCCCCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCACGGAAt < 2:824377/239‑1 (MQ=255) cttcAGACATGCTCAAACTCTCTTTAATCACGCCGCCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCGCGGAATAAaca < 2:429091/239‑1 (MQ=255) cttcAGACATGCTCAAACTCTCTTTAATCACGCCGCCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCACGGAATAAaca < 1:153891/239‑1 (MQ=255) ctTTAATCACGCCGCCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGGTTTTCCATTTTTCCCACCGGAAAAAAAACCCCG‑C‑GAACAACTGccaa > 1:902527/1‑235 (MQ=255) cACGCCGCCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCACGGAATAAACACCCCGAC‑GAACATCTGCAACACCACCAg < 1:714091/239‑1 (MQ=255) cgccgcCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATTGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGGAGG‑GTTTCATTTTTTCCCCCGGAATAAAAAACCCCACGGAACATC‑GCCAAaccacccacc > 2:514222/1‑235 (MQ=255) cgccgcCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑GTTCCCTTTGTCCCCACGGAATAAACACCCCGAC‑GAAAACCTGCAACAccacca > 1:527738/1‑236 (MQ=255) cgccgcCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGACAATCACCAGCGCCAGCAGCAGTCCACCGGCGGGGGAAGG‑GTTCATTTTTTCCCCCCGCACAAAAAACCCC‑CC‑GAACATCTGCAAAacccccc > 2:1236333/1‑235 (MQ=255) ccgccAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑GTTCCATTTGTCCCCa > 1:633076/1‑196 (MQ=255) aaGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCACGGAATAAACACCCCGAC‑GAACATCTGCAACACCACCAGCTG‑T‑TTCa < 1:76463/235‑1 (MQ=255) tAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCAc < 1:789645/175‑1 (MQ=255) aaaaaTGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGACAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCACGGAATAAACACCCCGAC‑GAACATCTGCAACACCACCAGCTG‑T‑TTCAGGCTGATACCCCATTTCAt < 1:1236333/239‑1 (MQ=255) aaGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGGAGG‑GTTTCATTTTTCCCCCCCGaaaaaaaa > 2:789645/1‑173 (MQ=255) ccAAACCCAACCCAGGTAGGGCGGGGAGTAATATCAAGGCGCAGGCGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCACGGAATAAACACCCCGAC‑GAACATCTGCAac < 2:1349212/192‑1 (MQ=255) cAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGGTGAGG‑TTTCCCTTTTTTCCCCCCGGATAAAAACCCCCAC‑GAACATCCGCAACACCACCACCCG‑T‑TTTAAGCTGATACCCCACTTCATGACCCCacaacc > 2:701722/1‑233 (MQ=255) gcccagGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCACGGAATAAACACCCCGAC‑GAACATCTGCAACACCACCAGCTG‑T‑TTCAGGCTGATACCCCATTTCATGACGCCAAAgccgctgccgct < 2:703788/239‑1 (MQ=255) cccagGTAATGTGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGCCGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑GTTTCATTTTTCCCCCCGGAATAAACACCCCGAC‑GAACATCTGCAACACCACCAGCt > 1:1349212/1‑192 (MQ=255) ccagGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCACGGAATAAACGCCCCGAC‑GAACATCTGCAACACCACCAGCTG‑T‑TTCAGGCTGATACCCCATTTCATGACGCCAAAgccgctgccgc < 1:838778/236‑1 (MQ=255) ccagGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCACGGAATAAACACCCCGAC‑GAACATCTGCAACGCCACCAGCTG‑T‑TTCAGGCTGATACCCCATTTCATGACGCCAAAgccgctgccgc < 1:1220566/236‑1 (MQ=255) ccagGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCACGGAATAAACACCCCGAC‑GAACATCTGCAACACCACCAGCTG‑T‑TTCAGGCTGATACCCCATTTCATGACGCCAAAgccgctgccgc < 1:701722/236‑1 (MQ=255) ccagGCAACGCGCGGAGTAATATCAAGACGCAGAAGGGCCATGGTGTTTTCGAACAGCGAGATAAACAGGACGCCGACCCCCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTGCCATTTGGCCCCACGGAATAAACTCCCCGAC‑GAACATCGGCAACACCACCAGCTG‑T‑TGCAGGCGGATACCCCATTTCATGACGCCAAAgccgcggccgc < 2:974475/236‑1 (MQ=255) gTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCAc < 1:848588/147‑1 (MQ=255) gTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCACGGAATAAACACCCCGAC‑GAACATCTGCAACACCACCAGCTG‑t‑tt < 1:119795/191‑1 (MQ=255) gAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGACAAGG‑TTTTCCTCTTTCGCCTCAGACTCAACACCCCAAC‑GCACACCTCTCACACCCACCCCTC‑T‑TTCAGGCttgtta > 2:119795/1‑187 (MQ=255) aGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCACGGAATAAACACCCCGAC‑GAACATCTGCAACACCACCAGCTG‑T‑TTCa < 1:365063/182‑1 (MQ=255) aGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCACGGAATAAACACCCCGAC‑GAACATCTGCAACACCACCAGCTG‑T‑TTCAGGCTGATACCCCATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCggg < 1:514222/238‑1 (MQ=255) tatCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCACGGAATAAACACCCCGAC‑GAACATCTGCAACACCACCAGCTG‑T‑TTCAGGCTGATACCCCATTTCATGAc < 1:680356/199‑1 (MQ=255) aGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TGTTCATTTTTCCCCCCGGAATAAAAACCCCCCC‑CAAAATCTGCAACACCACCAGCTC‑T‑TTCAGGGTGGTaac > 2:365063/1‑180 (MQ=255) aGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACCCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGGGAAGG‑TTTCCCTTTTTCCCCACGGAAGAAACACCCCCAC‑AAACAACTCCACCACCACCCGCTGTT‑TTCGGGCGGTCACCCC‑GTTCATTACGCCCAAACACCTGCCGCTGTTTTTCGACAGCGGGCcctccttcc > 2:959474/1‑235 (MQ=255) aCGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGAACACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGGAAA‑CTTCCATCTTTCCCCCCGGGAATAACACCCCCCC‑GGAGCTCAACCACACCACCAGCCG‑TGTTCTGTCT‑ATACCCCCCATCCTAACGCCCAAACCGATTCCGCCGTATTCTGAGAGCGGGCCTTCCCTCAGc > 2:352429/1‑238 (MQ=255) cAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑GTTCCCTTTGTCCCCCCCGAAAAAAAACCCCCCC‑GCACATCTGCCACACCCCCAGCTG‑T‑TTTACGCTGATACCCCCCTTCATTACGCCCAAaccc > 2:680356/1‑198 (MQ=255) aGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGCAGG‑TTTTCCTTTTTCCCCACGGGATAAAACCCCCGGC‑CCACAACCGCCACACCCCCCACTG‑T‑TTTAGGCTGCTTACCCCTTTCATCTAGCCCAAACCGCCGCCGCTGGATTTCGAGAGCGGGGCTTCCTGCCGCTccc > 2:1177656/1‑237 (MQ=255) ccATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCACGGAATAAACACCCCGAC‑GAACATCTGCAACACCACCAGCTG‑T‑TTCAGGCTGATACCCCATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGc < 2:919748/238‑1 (MQ=255) ccATGCTGTTTTCCAACAGCGCGATAACCAGGCCGCCGACCACCAGTTTTACGATGGCCATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCACGGAATAAACACCCCGAC‑GAACATCTGCAACACCACCAGCTG‑T‑TTCAGGCTGATACCCCATTTCATGACGCCAAAGCCGCTGCCGCTGt < 1:905666/201‑1 (MQ=255) gTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCACGGAATAAACACCCCGAC‑GAACATCTGCAACACCACCAGCTG‑T‑TTCAGGCTGATACCCCATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCa < 1:365468/239‑1 (MQ=255) ttttCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCACGGAATAAACACCCCGAC‑GAACATCTGCAACACCCCCAGCTG‑T‑TTCAGGCTGATACCCCATTTCATGACGCCAAAgccgctgccgc < 1:186497/190‑1 (MQ=255) ttttCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCACGGAATAAACACCCCGAC‑GAACATCTGCAACACCACCAg < 1:45758/143‑1 (MQ=255) ttttCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCACGGAATAAACACCCCGAC‑GAACATCTGCAACACCACCAGCTG‑T‑TTCAGGCTGATACCCCATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCg < 1:835070/235‑1 (MQ=255) ttCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCACGGAATAAACACCCCGAC‑GAACATCTGCAACACCACCAGCTG‑T‑TTCAGGCTGATACCCCATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGt < 1:1005071/239‑1 (MQ=255) gcgcGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑GTTTCATTTTTCCCCACGGAAAAAAAACACCCAC‑GGACAACTGCAACACCACCAGCAG‑G‑TTCAGGCTGATACCCCACTTCATAAAGCCAAAACCGCTGACGCTGTATTCCGAGAGCGGGCCCTCCTGCAGCTCCTGCCCGGCCCCCGCCCGGGCgca > 2:835070/1‑233 (MQ=255) gcgcGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑GTTCCCTTTTTTCCCCCGGAATAAACACCCCGAC‑GAACATCTTCAAAACCACCCGCCG‑T‑TTCAGGCTGAAACCCCCTTTTATGACGCCCAAGCCGCCGCCGCCGTATTCaga > 2:186497/1‑190 (MQ=255) cgcgATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCACGGAATAAACACCCCGAC‑GAACATCTGCAACACCACCAg < 1:1237206/132‑1 (MQ=255) cgATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGt < 1:494268/86‑1 (MQ=255) aCCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCACGGAATAAACACCCCGAC‑GAACATCTGCAACACCACCAGCTG‑T‑TTCAGGCTGATACCCCATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAA‑CGGCAGTTTGcc < 1:1277080/239‑1 (MQ=255) cAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCACGGAATAAACACCCCGAC‑GAACATCTGCAACACCACCAGCTG‑T‑TTCAGGCTGATACCCCATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCt < 1:485649/211‑1 (MQ=255) gACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGCGGAGG‑ATTCCCCTTTTCCCCCCggga > 2:494268/1‑84 (MQ=255) gCCGACCACCATGTTGACGATGGCAATCCCCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCTACGGAATAAACACCCCGAC‑GAACATCTGCAACACCACCAGCTG‑T‑TTCAGGCTGATACCCCATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAA‑CGGCAGTTTGCCCATTTCGa < 2:636414/239‑1 (MQ=255) ccGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCACGGAATAAACACCCCGAC‑GAACATCTGCAACACCACCAg < 1:164159/116‑1 (MQ=255) accaccAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑GTTTCATTTTTCCCCACGGAAAAAAAACCCCCAC‑GAACATCCGCAAAACCACCAGCTG‑T‑TTTAGGCTGATACCCCCATTCATGCCGCCCAAACCCCCGCCCCCGCATTTTGAGAGAGGGGCCTCCCGCAGCGCCCTCTCCGCTTCCCCCAggg > 2:485649/1‑210 (MQ=255) gTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑GTTTCCTTTTTCCCCCCGGAAAAAAAACCCCGAC‑GAACATCTGCAACACCACCCCCTG‑G‑TTCaag > 2:164159/1‑114 (MQ=255) gATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCAGTTGTCCCCACGGAATAAACACCCCGAC‑GAACATCTGCAACACCTCCAGCTG‑T‑TTCAGGCTGATACCCCATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCATTCCTGCAGCTCCTGCTCGGCGTCCGCCAGGTCGAA‑CGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGcac < 1:707403/239‑1 (MQ=255) tGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCACGGAATAAACACCCTGAC‑GAACATCTGCAACACCACCAGCTG‑T‑TTCAGGCTGATACCCCATTTCATGACGCCAAAgccgctgccg < 1:1391871/143‑1 (MQ=255) gCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑GTTCCATTTTTTCCCACGGAAAAAAAAACCCCCC‑GCACAACTGCAACACCACCACCTG‑T‑TTCATGCTTATACCCCACTTCCTCATGCCAAAACCCCCTCCCCCCCATTCCCAGAGCGGGCCCTTCTGCAGCTCCCCCCCGGCCTCCCCCATGTCGAACCGCCAGTTTCCCACTTCCTGTAAAGG‑GGGGAACGccacgg > 2:1167400/1‑233 (MQ=255) aaTCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCAc < 1:321016/55‑1 (MQ=255) tCACCAGCCCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTCCCATTTGTCCCCACGGAATAAACACCCCGAC‑GAACATCTGCAACACCACCAGCTG‑T‑TTCAGGCTGATACCCCATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAA‑CGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACaa < 1:352429/239‑1 (MQ=255) cAGCGCCAGCAGCAGTCCACCGGC‑GGGGAAGG‑GTTTCATTTTTTCCCCCGGGAAAAAAACCCCCAC‑GAAAAACTGCAACACCACCCGCCG‑T‑TTCAGGCTGATACCCCCTTTTATTACGCCCAAGCCCCCCCCGCCTTATTCag > 2:1391871/1‑143 (MQ=255) gcCAGCAGCAGTCCACCGGC‑GGTGGAGG‑GTTTCATTTTTCCCCCCCGaaaaaaaa > 2:321016/1‑53 (MQ=255) agTCCGCCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCCCGGAATAAACACCCCGAC‑GAACATCTGCAACACCACCCGCGG‑T‑TTCAGGCTGATACCCCATTTCATGACGCCAAAGCCGCTGCCGCTGTATGCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAA‑CGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAGCGCCAGTAccg < 2:137016/235‑2 (MQ=255) agTCCACCGGC‑TGTGAAGG‑TTTCCATTTGTCCCCACGGAATAAACACCCCGAC‑GAACATCTGCAACACCACCAGCTG‑T‑TTCAGGCTGATACCCCATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAA‑CGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAGCGCCAGTACCAg < 2:527738/236‑1 (MQ=255) tCCACCGGC‑GGTGGAGG‑TTTCCATTTGACCCCACGGAATAATCACCCCGAC‑GAACATCTGCAACGCCACCAGCTG‑T‑TTCAGGCTGATACCCCATTTCATGGCGCCAAAGGCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGc < 1:1053408/145‑1 (MQ=255) tCCACCGGC‑GGTGAAGG‑TTTCCATTTTTCCCCAAGGAATAAACCCCCCGAC‑GAACATCTGCAACACCACCAGCTG‑T‑TTCAGGCTGATACCCCATTTCATGGCGCCAAAGCCGCTGCCGTTGTATTCAGAGAGCGGGCCTTCCTGTAGCTCCTGCTCGGCTTCCGCCAGGTCGAT‑CGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAgg < 1:1398436/215‑1 (MQ=255) gTGAAGG‑GTTCCATTTTTCCCCCCCGAATAAAAACCCCCCC‑GAACATCTGCAACACCACCACCTG‑T‑TTCCGGCTGATACCCCCTTTCATGACCCCCAAACCGCCGCCGCCGTATTCAGAGAGCGGGCCTTCCTGCAGCCCCTCCTCGGCTTCCGCCCGGTCGAA‑CGGCAGGTTGCCCCCTTCGATAAAGGGGGCGGACGCACAGGCCCAAAACGCCCGGACCACCGGGACGc > 2:275435/1‑232 (MQ=255) ttCCATTTGTCCCCACGGAATAAACACCCCGAC‑GAACATCTGCAACACCACCAGCTG‑T‑TTCAGGCTGATACCCCATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAA‑CGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAGCGCCAGTACCAGCGGGATGCTCTGGCTCAGCGGc < 1:373870/238‑1 (MQ=255) ttCCATTTGTCCCCACGGAATAAACACCCCGAC‑GAACATCTGCAACACCACCAGCTG‑T‑TTCAGGCTGATACCCCATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAA‑CGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAGCGCCAGTACCAGCGGGATGCTCTGGCTCAGCGGc < 1:384800/238‑1 (MQ=255) ttCCATTTGTCCCCACGGAATAAACACCCCGAC‑GAACATCTGCAACACCACCAGCTG‑T‑TTCAGGCTGATACCCCATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAA‑CGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAGCGCCAGTACCAGCGGGATGCTCTGGCTCAGCGGc < 1:959474/238‑1 (MQ=255) | CCTAATTTTTCTTCAGACATGCTCAAACTCTCTTTAATCACGCCGCCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGC‑GGTGAAGG‑TTTCCATTTGTCCCCACGGAATAAACACCCCGAC‑GAACATCTGCAACACCACCAGCTG‑T‑TTCAGGCTGATACCCCATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAA‑CGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAGCGCCAGTACCAGCGGGATGCTCTGGCTCAGCGGC > NC_000913/2846452‑2846912 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |