| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 811,721 | 0 | T | G | 34.2% | 136.8 / 15.3 | 77 | V67G (GTG→GGG) | bioC | malonyl‑ACP O‑methyltransferase, SAM‑dependent |
| Reads supporting (aligned to +/- strand): ref base T (9/41); new base G (23/3); total (33/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.48e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GAAATGCAGGATATCGACCGTCTGCTGGAGGTGCTGCATGGCAACGGTT‑AATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGACCATTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGTAATTTATCCACGGCACTCCGCGAGCTGTATCGGGTGGTGCGCCCCAAAGGCGTGGTCGCGTTTACCACGCTGGTGCAGGGATCGT > NC_000913/811485‑811957 | gAAATGCAGGATATCGACCGTCTGCTGGAGGTGCTGCATGGCAACGGTT‑AATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGG‑TTGTGGCCCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGa < 2:449319/239‑1 (MQ=255) atCGACCGTCTGCTGGAGGTGCTGCATGGCAACGGTT‑AATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGGACGTCACGCGCAGGGGACGGCCTTTGa > 1:1092813/1‑237 (MQ=255) tCTGCTGGAGGTGCTGCATGGCAACGGTT‑AATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGGACGTCACCGGCAGGGGAGGGCCTTAGATT‑T‑CTcccc > 1:212048/1‑238 (MQ=255) ctgctgGAGGTGCTGCATGGCAACGGTT‑AATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGGCACGCGCCGGGGACGGCCCTTGAGT‑T‑CTcgccg > 1:265907/1‑238 (MQ=255) gctgcATGGCAACGGTT‑AATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGGACGGCCAGCGCCGGGGACGGGCCTTGATC‑T‑CTCGCCCCCCACGCTTGt > 2:561051/1‑238 (MQ=255) tGGCAACGGTA‑AATAAACAGGCCATTGCAGGGGGATTTGATCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGGGCCAGAGTGCTGACGCTTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGGGGG‑TTGTGGGCCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCa < 2:529974/239‑1 (MQ=255) atgCAACGGTTAAAAAAACAAGCCTTGGCAGCGGCATTTGGTCGGGGAGCCGCCCCCTATGAGCAACAGGCAGATCTACAGCGCAAGGGTGCTGACGCCTAACTGGAAATGCTTCCACAGCGTAAATACACCCACGTACTGGAGGGGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAgg < 2:212048/236‑1 (MQ=255) ggaaagggTA‑AAAAAAAAAGCCATTGCAGGGGCATTGGGCGGGGCAGCCGCACCCTAGGAGCAACAGGCAGATCTACGGCGCCAGAGTGCTGACGCCTTCCGGGCAATGCTTCCACAGCGTAAATACCCCCACGTACTGGACGCGGG‑TTGTGGACCGGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCa < 2:1092813/232‑1 (MQ=255) aaaaaccAAGCCATTGCAGGGGGATTTGGTCGGGCAGCCGCCCACTATGAGCAACATGCAGATCTACAGCGCCAGGGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATCCCCCCCCGTACTGGCCGCGGG‑TTGTGGCCCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGa < 2:734312/233‑1 (MQ=255) aCAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCCCGTACTGGACGCGGG‑TTGGGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCg < 1:578345/239‑1 (MQ=255) aCAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCg < 1:684440/239‑1 (MQ=255) aCAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCg < 1:221411/239‑1 (MQ=255) aCAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGCGACGGCCCGCGCCAGAGGCGGCCCTAGAACTT‑CCCCCCCCCATTGC‑TGTTTCGGCACGCCCGGAGGGTGcc > 2:1075121/1‑238 (MQ=255) aggCCATTGCAGCGGCATGTGGTCGGGCAGCCGCACACTAGGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCa < 1:16486/237‑1 (MQ=255) aacccATGGCAGCGGATTTGGGCCGGGCAGCCGCACACTATGAGCAAAATGAAGATCTACAGCGCCAGAGGGCTGACGCTTTCCGGGCAATGCTCCCACAGCGTAAATCCCCCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCa < 2:1138666/236‑1 (MQ=255) aGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGGGGCGGGTACCGCCGTAGATT‑T‑CTCGCCGCCGAAGCTTGTTCCGGCACGCCAGGAGGATGgcgccg > 1:892736/1‑237 (MQ=255) aGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGCCCCGGGCCGGGGGCGGCCGTGGATC‑C‑TCCTCCGCCACCTCCTGTTCCGGGACGCCCGCAGGGTGCCGccg > 2:949569/1‑237 (MQ=255) aGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAAAGTCACGCGCAGGTGAAGGCCCTAGATC‑T‑CTCGCCGCCAATGCTTGTTTCGGGCCGCCCGAAGGATGCCGccg > 1:888209/1‑237 (MQ=255) aGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAAAGGCACGCGCCGGTGGCGGCCTTAGTAC‑TCCCCCCCGCCAAGGCTGTTCCAGGC‑CGCCCGAAGGAGGTCGccg > 2:160374/1‑237 (MQ=255) cATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCa < 1:1015794/235‑1 (MQ=255) tGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGGCACTCGCCGGTGACGGCTCTTGGTC‑T‑CTCCCCGCCCCCGCCTGTTCACGCACGCCCGTAGGATGcc > 2:1330049/1‑229 (MQ=255) ggCATTTGGTCGGGAAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGACCATTAt < 1:561051/235‑1 (MQ=255) cggTGGGGCAGCCGCCCGCATGGAGCAACATGCGGAGCAACGGCGCCGGAGTGCTGCGGCCTTACTGGCAATGCTTCCAGAGCGTAAATGCACCCACGGACGGGACGGGGG‑TTGTGGGCCGGGCT‑GGAGGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGACCATTATCTGGCGGgag < 2:405758/238‑1 (MQ=255) ggCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGa < 1:755847/158‑1 (MQ=255) ccGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGa < 2:925889/153‑1 (MQ=255) ccGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGa > 1:925889/1‑153 (MQ=255) cacTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGGGCCGCGCAGGGGGCgggcctata > 2:755847/1‑151 (MQ=255) ccTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGACCATTATCTGGCGGgag < 1:563000/221‑1 (MQ=255) acTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCCCGCGCCGGTGACGGCCCTCGATC‑T‑CTCGCCGCCAACGCCTGTTCAGGCGCGCCCGAAGGACGCCGCAGACCATTATCTCGCCGGTGGTATCGAATcccctccg > 2:1335736/1‑234 (MQ=255) aCATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGGGAGGGCCTTAGATC‑T‑CTCGCCCCCAATGCTTGTTTCGGCACGCCCGAAGGATGCCGCCGACCCTTATCTGGCGGGGGATATCGaaac > 2:563000/1‑220 (MQ=255) aTGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGGCACGCGCAGGTGACGGCCCTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGCAGGATGCCGCAGACCACTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACAGCg > 1:423177/1‑239 (MQ=255) gCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCCGGGGACGGCCTTTGATC‑T‑CTCGCCGCCCATGCCTGTTCAGGCACCCCCGAAAGGTGCCGCCGCCCACTACCTTGCGGGGGATATCGGATTCCCGCCCCTAGCGGCTGCggc > 2:1172737/1‑237 (MQ=255) cgcCAGGGTGCCGCCGCCTTGGGGGAAGTCCTCCCACGGCGAAAACCCCCCCCCGT‑CGGGGCGGGGGTTTGGGGCCCGGGCT‑GGATGGGCCGCCCCGGGC‑GGGAACGTCACGCGCAGGGGACGGCCTTAGATC‑T‑CTCGCCGCCAAGGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGACCATTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATc < 2:856421/235‑1 (MQ=255) cgcCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGG‑TTGGGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGGACGGCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGGACGCCCGAAGGATGCCGCAGACCACTATCTTGCGGGAGATATCGAATCCCCGCCGTTAGCGACTGCGACGTTCTATCTTg > 1:1288166/1‑238 (MQ=255) gagTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACCTCACGCGCCGGGGACGGCCCTTGAAC‑C‑TTTGCCTCCCATGCTTGTTTAGGCACGCCCGAAGGATGCCGCCGACCCTTTTCTGGCCGGGGATATCGAATCCCCGCCGTTAGCGACTGCGACGTTCGGCCTTgtctggg > 2:812050/1‑233 (MQ=255) ggccgccccccTTACTGGAAATGCTCCCCACGCGAAAAACCCCCCACTTGCGGGCCGGGGT‑TGGTGGCCCGGGTG‑AGATGGGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGACCATTATCTGGCGGGAGATATCGAACCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAg < 2:662669/229‑1 (MQ=255) tGCGGACGCCTTGCTGGCATGGCTTCCACAGCGTAAATACCCCCACGTACGGGACGGGGG‑TTGTGGCCCTGGCG‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGACCATTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGtt < 1:923720/222‑1 (MQ=255) cTGGCGCCTTACGGGCATTGCTTCCACCGCGTAAATACCCCCACGTACTGGACGCGGG‑TTGTGGCCCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTGCAGGCACGCCAGAAGGATGCCGCAGACCATTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAGCaa < 1:1098122/238‑1 (MQ=255) cgcTTACTGGGAATGTTTCCCAAGGGAAAATCCCCCCACTGCGCGGGCGGGGG‑TTGTGGGCCTGGGTGGGAGGGCCCGCCCCGGGG‑GGGAACGTCCCGCGCAGGGGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGACCATTATCTGGCGGGAGATATCGAACCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAGCAATCTCg < 2:265907/237‑1 (MQ=255) ttACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAAAGTCACGCGCCGGGGACGGGCTTTGATC‑T‑CCCGCCGCCAAAGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGACCACTATCTGGCGGGGGATGTCGCATACCCGCCGCTTGCGACAGCGACGTTCgcttctgca > 2:923720/1‑214 (MQ=255) aCTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGGGGCGGCCTTAGATC‑T‑CCCGCCCCCCAAGCTTGTTCAGGCACCCCCGAAGGATGCCGCAGACCCATATCTGGGCGGGGGTATTGAAGCCCTTCCGGTAGCGGATGCGGCGTTCGAACTTTCACGGGGCAAACTCccacggt > 2:635744/1‑235 (MQ=255) tGCTTCCACGGCGTAAACACCCCCACGTACTGGACGGGGG‑TTGTGGACCTGGCT‑GGAGGGGCCGCCACTGGC‑GGAAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGACCATTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGc < 1:1075121/239‑1 (MQ=255) tGCTTCCACAGCGAAAATACACCCAGTTACGGGACGGGGG‑TTGTGGACCTGGCG‑GGGTGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGACCATTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGc < 1:487365/239‑1 (MQ=255) gCTTCCACAGCGTAAATCCCCCCACGTACGGGCGGCGGG‑TTGGGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGACCATTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCg < 1:949569/239‑1 (MQ=255) acgtgaaaaaACCCCCACGTACGGGACGGGGT‑TTGGGGCCCGGGGG‑GGATGGGCCGCCACGGGG‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGACCATTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGTAAttt < 1:635744/233‑1 (MQ=255) cggaagtACACCCACGTACTGGAGGCGGG‑TTGTGGCCCTGGCT‑GGATGGGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGACCATTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAg < 1:561163/200‑1 (MQ=255) cGTAAATACACCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCCGGGGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCCGAAGGATGCCGCAGACCCTTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGTAATTTAt > 1:461037/1‑238 (MQ=255) aaaTACACCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGAc < 1:717867/80‑1 (MQ=255) aatccccccACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGACCATTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGtt < 1:276012/181‑1 (MQ=255) aaTACCCCCACGTACGGGACGCGGG‑TTGTGGCCCTGGCT‑GGATGGGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGa < 2:490531/78‑1 (MQ=255) aaTACACCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAgg < 1:509382/114‑1 (MQ=255) cccccACGTCGTGGACGCGGG‑TTGGGGACCTGGCT‑GGAGGGGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGACCATTATCTGGCGGGAGATATCGAATCCCTGCCGTGAGCGACTGCGACGTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGTAATTAATCCACGGCAc < 1:1335736/237‑1 (MQ=255) cccACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTTGATC‑T‑CTCGCCGCCCATGCTTGTTCAGGCACGCCCGAAGGAGGCCCCAGACCATTTTc > 1:77997/1‑138 (MQ=255) ccACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAg < 1:842221/128‑1 (MQ=255) aCGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAAAGTCACGCGCAGGGGGCGGGCTTAGAt > 2:717867/1‑80 (MQ=255) cGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGGGACGGCCCTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGACCATTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTTGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGGAATTTATCCACGGCACTCcgcg > 1:375675/1‑239 (MQ=255) cGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGGCACGCGCAGGGGGCGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCCGaa > 2:509382/1‑114 (MQ=255) cGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGGCACGCGCAGGGGACGGCCCTaaa > 1:490531/1‑76 (MQ=255) aCTGGAGGCGGG‑TTGGGGCCCTGGCT‑GGAGGAGCCGCCACGGGC‑GGGAACGGCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGACCATTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGTAATTTATCCACGGCACTCCGCGAg < 1:1172737/238‑1 (MQ=255) gggcggggg‑TTGGGGGACTGGGT‑GGGTGGGCCCCCCCCGGGGGGGACCGCCACGCGCGGGGGACGGCCTTAGATC‑T‑CCCGCCGCAAATGCTGGTTCAGGCACGCCAGAGGGAGGCCGCAGACCATTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGTAATTTATCCACGGCACTCCGCGAGCt < 2:375675/232‑1 (MQ=255) ggACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAAAGTCCCGCGCAGGGGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCCGAAGGATGCCGCAGACCCTTATCTGGCGGGGGATATCGAATCCCTGCCGCTAGCGACTGCGGCGGTCGCTCTTGCCTGGGGGAATCCTCCCGTGCCGGGGGGGGGGAATTTTTTCACCCCACTcccccgacgtc > 2:429590/1‑230 (MQ=255) gACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGaa < 1:989380/107‑1 (MQ=255) gACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGGGACGGCCTTAGATC‑T‑CTCGCCCCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCCCAGACCATTATCTGGCGGGGGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATc > 1:1206659/1‑175 (MQ=255) gACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGGCACCCGCAGGGGGACGCCTTTGATC‑T‑CTCGCCCCCCAAGCTTGTTTAGGGCCGCCAGGAGGATGCCGCAGACCAtttttc > 2:842221/1‑124 (MQ=255) aCGGGGG‑TTGGGCACCGGGCT‑GGAGGGGCCGCCCCGGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGACCATTATCTGGCGGGAAATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGTAATTTATCCACGGCACTCCGCGAGCTGTa < 1:812050/238‑1 (MQ=255) g‑TTGTGGACCGGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAgg < 2:621795/90‑1 (MQ=255) g‑TTGTGGACCGGGCG‑GGATGGGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGACCATTATCTGGCGGGAGATATCGAATCCCTGccag < 2:736605/147‑3 (MQ=255) gtgGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCCCGCGCAGGGGGCGGCCCTTGATC‑T‑CTCCCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGcc > 2:989380/1‑106 (MQ=255) gtgGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGGCACCCGCCGGGGAGGGGCCTAGATC‑T‑CTCGCCCCCAATGCTTGTTTAGGCACGCCCGAAGGATGCCGCAGACCCTTATCTGGCGGGGGGAATCGAAACCCCGCCGTTAGCGACCGCGGCGGTCGATCTTGCCTGGGGCAATCCCGCAGGGCAGTGGGGGGGGAAATTTTCCACGGCACTCCCCGAGCTGGGTCgggggggg > 2:604089/1‑237 (MQ=255) gtgGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAAAGTCACGCCCCGGGGACGGCCCTTGATC‑T‑CTCCCCGCCAATGCTTGTTCAGGCACGCCCGAAGGATGGCGCCGACCATTATCTGGCGGGGGGTATCGAATCCCCGCCGGTAGCGGCTGCGACGTTCGGTCTTGCATGGGGCAATACCGCCGAGCCGTGGGGCGGGAATTTATCCACGGGCCTCCGCGAGCTGTATCTggggggg > 2:1341822/1‑237 (MQ=255) gccgccACTGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGACC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGACCATTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAGCAATCTCg < 1:721188/165‑1 (MQ=255) gccgccACGGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGACCATTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGTAATTTATCCACGGCACTCCGCGAGCTGTATCGGGTGGTGCGCCCCAAAGGCGTGGt < 1:160374/238‑1 (MQ=255) cACTGGC‑GGGAACGTCCCGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGACCATTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGTAATTTATCCACGGCACTCCGCGAGCTGTATCGGGTGGTGCGCCCCAAAGGCGTGGTCGCGtt < 1:28183/239‑1 (MQ=255) cACTGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGACCATTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGTAATTTATCCACGGCACTCCGCGAGCTGTATCGGGTGGTGCGCCCCAAAGGCGTGGTCGCGtt < 1:1341822/239‑1 (MQ=255) tGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGACCATTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGTAATTTATCCACGGCACTCCGCGAGCTGTATCGGGTGGTGCGCCCCAAAGGCGTGGTCGCGTTTAc < 1:429590/239‑1 (MQ=255) gAACGTCCCGCGGAGGTGCCGGCCTTAGCCC‑C‑CTCCCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGACCATTATCTGGGGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGTAATTTATCCACGGCACTCCGCGAGCTGTATCGGGTGGTGCGCCCCAAAGGCGTGGTCGCGTTTACCACGc < 2:1288166/238‑1 (MQ=255) ggTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGACCATTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGTAATTTATCCACGGCACTCCGCGAGCTGTATCGGGTGGTGCGCCCCAAAGGCGTGGTCGCGTTTACCACGCTGGTGCAGGGATCGt > 1:943502/1‑239 (MQ=255) | GAAATGCAGGATATCGACCGTCTGCTGGAGGTGCTGCATGGCAACGGTT‑AATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGG‑TTGTGGACCTGGCT‑GGATGAGCCGCCACTGGC‑GGGAACGTCACGCGCAGGTGACGGCCTTAGATC‑T‑CTCGCCGCCAATGCTTGTTCAGGCACGCCAGAAGGATGCCGCAGACCATTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCGACGTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGTAATTTATCCACGGCACTCCGCGAGCTGTATCGGGTGGTGCGCCCCAAAGGCGTGGTCGCGTTTACCACGCTGGTGCAGGGATCGT > NC_000913/811485‑811957 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |