Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,781,1520AG23.3% 292.0 / 29.3 159intergenic (+135/‑63)lldD/trmLL‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent
Reads supporting (aligned to +/- strand):  ref base A (78/44);  new base G (0/37);  total (78/81)
Fisher's exact test for biased strand distribution p-value = 8.44e-14
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 161 total aligned reads displayed.

GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCG  >  NC_000913/3781053‑3781250
                                                                                                    |                                                                                                  
gggAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGa                                                                                                    >  1:4808983/1‑100 (MQ=255)
 ggAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAg                                                                                                   <  1:1498372/100‑1 (MQ=255)
  gagaGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAgg                                                                                                  <  1:1046957/100‑1 (MQ=255)
  atctggggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAgg                                                                                                  <  2:1583800/96‑1 (MQ=255)
   agagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAggg                                                                                                 <  2:3432596/100‑1 (MQ=255)
   agagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAggg                                                                                                 <  1:2417563/100‑1 (MQ=255)
   agagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAggg                                                                                                 <  1:3554757/100‑1 (MQ=255)
   agagGGGACCGGTCGGCGCTGTATGTACTCCCTCACTCTGGAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAggg                                                                                                 <  2:4282809/100‑1 (MQ=255)
    gagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAgggg                                                                                                <  2:5143371/100‑1 (MQ=255)
    gagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAgggg                                                                                                <  1:2093978/100‑1 (MQ=255)
      ggggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAggagat                                                                                              >  1:1603300/1‑96 (MQ=255)
      ggggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGaa                                                                                              >  1:261276/1‑100 (MQ=255)
      ggggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGaa                                                                                              >  2:3843506/1‑100 (MQ=255)
      ggggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGaa                                                                                              >  1:3297035/1‑100 (MQ=255)
      cgggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGCAACGACACCGCACTATTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGCGCCGGGGTGAGGGGaa                                                                                              >  2:1324501/2‑100 (MQ=39)
       gggACCGTTCTGCGCTGTATGTACTCCCCCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTCAGGGGaaa                                                                                             <  2:1715048/100‑1 (MQ=255)
        ggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGaaaa                                                                                            <  2:3137859/100‑1 (MQ=255)
        ggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGaaaa                                                                                            >  1:2768811/1‑100 (MQ=255)
         gACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAg                                                                                           >  2:381467/1‑100 (MQ=255)
         gACCGGTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAg                                                                                           <  2:3916920/100‑1 (MQ=255)
          acctgtCGGCGCTGTATGTACTCCCTCACTCTGAAACGAAACCGCACGCTTTTTTTCTCCCTCGCC‑CCGCCGGGGAGAGGGCCGGGGTGAGGGGAAAAgg                                                                                          <  1:794302/95‑1 (MQ=38)
           ccGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGc                                                                                         >  1:27072/1‑100 (MQ=255)
            cGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGcc                                                                                        <  2:3209400/100‑1 (MQ=255)
             gTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCg                                                                                       >  1:5119253/1‑100 (MQ=255)
                cGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCAc                                                                                    >  1:45246/1‑100 (MQ=255)
                 ggCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACt                                                                                   >  2:1654070/1‑100 (MQ=255)
                  gcgcTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCTCTTGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGGAAAGGCCGCACTg                                                                                  >  2:572557/1‑100 (MQ=255)
                   cgcTGTATGTACTCCCTCCCTCGAAAACGACACCGCCCTCTTTTTTTCCCCCCCGCC‑CCTCCGGGGAGGGGGCCGGGGGGGGGGGAAAAGGCCGCACTGc                                                                                 <  2:1669790/100‑1 (MQ=255)
                    gcTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCt                                                                                >  1:2435021/1‑100 (MQ=255)
                      tgtatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCTGGGTGAGGGGAAAAGGCCGCACTGCTCa                                                                              >  1:2667973/1‑100 (MQ=255)
                      tgtatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCCCa                                                                              >  1:1291893/1‑100 (MQ=255)
                       ttatgtcCCCCCTCACCCGGAACCGACACCGGACTTTTTTTTTCTCCCTCCCC‑CCCCCGGGGAGGGGGCCGGGGTGAGGGAAAAAGGCCGCACTGCTCAc                                                                             <  2:1817637/99‑1 (MQ=255)
                       gtttgtaCCCCCTCACTCTGAAACGGCCCCGCCCTCTTTTTTCCCCCCGGGCC‑CCCCCGGGGGGGGGCCGGGGGGGGGGGGAAAAGGCCGCACTGCTCAc                                                                             <  2:3470035/97‑1 (MQ=255)
                           ttaCCCCCTCCCTCTAAACCCACCCCCCCCTTTTTTTTTCCCCCCCCCC‑CCCCGGGGGAGGGGGCGGGGTGGGGGGGAAAAGGCCGCACTGCTCACCAAt                                                                         <  1:3940680/99‑1 (MQ=255)
                           gtcctccctccCTTTAAACCGACCCCGCCCTTTTTTTTTCCCCCCCCCC‑CCTCGGGGGGGGGGGCCGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAAt                                                                         <  1:2469899/97‑1 (MQ=255)
                           gtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGCGAGGGGAAAAGGCCGCACTGCTCACCAAt                                                                         >  2:2232747/1‑100 (MQ=255)
                            taCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTTTTTTTTGCA‑CCTCCGAGGAGAGGGCCGGGGAGAGGGGAATAGGCGGCAGTGATCACCAAtt                                                                        >  2:3103799/1‑100 (MQ=255)
                            taCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAtt                                                                        >  1:4208550/1‑100 (MQ=255)
                            taCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACGGCTCACCAAtt                                                                        >  1:538504/1‑100 (MQ=255)
                              cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAtttt                                                                      >  2:2544042/1‑100 (MQ=255)
                              cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAtttt                                                                      >  1:2646541/1‑100 (MQ=255)
                               tCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTc                                                                     >  1:4496440/1‑100 (MQ=255)
                               cccctccctCTGAACCGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCCCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTc                                                                     <  2:2849909/99‑1 (MQ=39)
                                 ccccACTCTAAAACGACCCCCCCCTCTTTTTTCCCCCCCCCCC‑CCCCCGGGGAGGGGCCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTg                                                                   <  1:12663/97‑1 (MQ=255)
                                  cTCCCTCTGAAACGACCCCGCACTTTTTTTTCCCCCCTCCCC‑CCTCGGGGGAGGGGGCGGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGc                                                                  <  1:3370286/100‑1 (MQ=255)
                                   tCACTCTAAACCGCCCCCGCACTCTTTTTTCCCCCCGCGCC‑CCCCCGGGGGGGGGCCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCt                                                                 <  1:286428/100‑1 (MQ=255)
                                     aCTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTAt                                                               >  1:2233470/1‑100 (MQ=255)
                                        ctGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCt                                                            >  1:1039436/1‑100 (MQ=255)
                                          gAAACGACACCGCACTCTTTTTTTTTTTTTTTTT‑CCTCCGGGGAGAGGGCCGGGGTGATTGGTATAGGCTGCACTGCTCACCAATTTTCTGCTATCCTGc                                                          >  2:3625588/1‑100 (MQ=255)
                                          gAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCtcc                                                          >  1:4629914/1‑98 (MQ=255)
                                          gAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGc                                                          >  1:5328314/1‑100 (MQ=255)
                                             aCGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGcccc                                                       >  1:4123182/1‑100 (MQ=255)
                                              cGACCCCGCACCCTTTTTTTCCCCCCCGCC‑CCCCGGGGGAGGGGCCGGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccccc                                                      <  2:296205/100‑1 (MQ=255)
                                                 cacCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGCCAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCACTTTTCTGCTATCCTGCCCCCGCa                                                   >  2:4641420/1‑100 (MQ=255)
                                                 cacCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCa                                                   >  2:3316882/1‑100 (MQ=255)
                                                  cccGCATTTTTTTTTTCCCCCTCGCC‑CCCCGGGGGGGGGGGCGGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCAc                                                  <  1:4861679/99‑1 (MQ=255)
                                                  cccGCACTCTTTTTTTCCCCCTCGCC‑CCTCGGGGCAGAGGGGGGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCAc                                                  <  2:258716/99‑1 (MQ=255)
                                                   cccccctctTTTTTCCCCCCCCGCC‑CCCCCGGGGAGGGGGCGGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACt                                                 <  2:2840880/95‑1 (MQ=255)
                                                   ccGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACt                                                 >  1:2192668/1‑100 (MQ=255)
                                                      cACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAg                                              >  2:1171138/1‑100 (MQ=255)
                                                       attctTTTTTCCCCCCTCCCC‑CCCCCGGGGAGGGGCCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGTCCCCGCACTAAgg                                             <  2:5046957/98‑1 (MQ=255)
                                                       aCTCTTTTTTTCCCCCCCGCC‑CCCCCGGGGAGAGGGCGGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGTCCCCGCACTAAgg                                             <  2:5045774/100‑1 (MQ=255)
                                                        ctctTTTTTTCCCCCCCGCC‑CCTCCGGGGGGAGGGCGGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg                                            <  2:710945/100‑1 (MQ=255)
                                                        ctctTTTTTTCCCCCCCCCC‑CCTCGGGGGGGAGGGCGGGGGGGGGGGAAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg                                            <  1:3537676/100‑1 (MQ=255)
                                                        acctTTTTTTCCCCCCGGCCGCCCCGGGGGAGGGGGCGGGGGGGGGGCGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgn                                             <  1:1622317/98‑2 (MQ=255)
                                                           tttttttCCCCCTCGCC‑CTTCGGGGGAGGGGGCCGGGGGGGGGGAAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGc                                         <  1:4298234/100‑1 (MQ=255)
                                                           ttttttcCCCCCTCGCC‑CCCCGGGGGAGGGGGCGGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGc                                         <  2:1115566/100‑1 (MQ=255)
                                                            tttttcCCCCCTCGCC‑CCCCGGGGGGGGGGGCGGGGGGGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCa                                        <  1:3909661/100‑1 (MQ=255)
                                                               tttCCCCCCCCCC‑CCCCGGGGGGGGGGGCGGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTa                                     <  1:3714431/100‑1 (MQ=255)
                                                                ttCTCACTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTAt                                    >  2:788764/1‑100 (MQ=255)
                                                                ttCCCCCCCGCC‑CCTCCGGGGGGGGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTAt                                    <  2:4569879/100‑1 (MQ=255)
                                                                tcctcCCTCGCC‑CCGCGGGGGAGGGGGCCGGGTGGGGAGAAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTAt                                    <  1:1350756/98‑1 (MQ=255)
                                                                    cccTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCATGCCCCCGCACTAAGGGGGCAGTATGCTa                                >  2:4351448/1‑100 (MQ=255)
                                                                     ccTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaa                               >  1:635141/1‑100 (MQ=255)
                                                                     ccTCGCC‑CCTCCGGGGAGAGGGCCGGGGGGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaa                               >  2:3322209/1‑100 (MQ=255)
                                                                       ccccc‑ccccGGGGGGGGGGGCCGGGGGGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAAc                             <  1:5072089/97‑1 (MQ=255)
                                                                             ccTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGt                        >  1:1052632/1‑100 (MQ=255)
                                                                             ccTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGt                        >  1:1993305/1‑100 (MQ=255)
                                                                             ccTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGt                        >  2:4440050/1‑100 (MQ=255)
                                                                             ccTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGt                        >  1:2856244/1‑100 (MQ=255)
                                                                              cTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTa                       >  2:4616031/1‑100 (MQ=255)
                                                                               tcgggggggggggCGGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTAc                      <  1:1033945/97‑1 (MQ=255)
                                                                                   ggggGAGGGCGGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTa                  <  2:5413453/100‑1 (MQ=255)
                                                                                   gggAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTa                  <  2:4764329/100‑1 (MQ=255)
                                                                                    ggAGGGGGCGGGGGGGAGGGAAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTAc                 <  1:1787478/100‑1 (MQ=255)
                                                                                    ggAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTAc                 >  1:118939/1‑100 (MQ=255)
                                                                                     gagaGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACg                >  1:294773/1‑100 (MQ=255)
                                                                                     gagaGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTACTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACg                <  2:4502793/100‑1 (MQ=255)
                                                                                         gggCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAcc            >  1:724939/1‑100 (MQ=255)
                                                                                         gggCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAcc            >  2:2320297/1‑100 (MQ=255)
                                                                                            ccGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGa         <  2:2771302/100‑1 (MQ=255)
                                                                                             gggggTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGaa        <  2:2981339/99‑1 (MQ=255)
                                                                                             cGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGaa        >  2:2068772/1‑100 (MQ=255)
                                                                                                ggTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATTCTAAACTTCTTACTTTACGAACCAGAAAtt     >  2:1941738/1‑100 (MQ=255)
                                                                                                ggTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAAtt     >  1:4385171/1‑100 (MQ=255)
                                                                                                ggTGAGGGGAAAAGCCCGCACTGCTCTCCAATTTTCTGCTATCCTGCGCCCGCAATAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAAtt     >  2:5131326/1‑100 (MQ=255)
                                                                                                 gTGAGGGGAAAAGGCCGCACTGCTCGCCAATTTTCTGCTATCCTGCCCTCGCAATAAGGGGGCAGTATGCTAAATATAGTACTTTATGAACCAGAAATTc    >  2:1339191/1‑100 (MQ=255)
                                                                                                   gAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCg  >  1:1352347/1‑100 (MQ=255)
                                                                                                   gAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCg  <  1:3497207/100‑1 (MQ=255)
                                                                                                   gAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCg  <  1:3428788/100‑1 (MQ=255)
                                                                                                    |                                                                                                  
GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCC‑CCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCG  >  NC_000913/3781053‑3781250

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑