| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,101,673 | 0 | T | A | 31.0% | 119.9 / 11.6 | 59 | L4F (TTA→TTT) | csgG | curli production assembly/transport outer membrane lipoprotein |
| Reads supporting (aligned to +/- strand): ref base T (12/28); new base A (18/0); total (30/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.21e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ATTGCCGTGGCGCTTTGCGGAACAGCAGTGGAGAAGTTACTTGCCGGGTAGGGTTTAAATTGCCCGGTTTCGTCCTGAATGTTGTATACCGAAACAAAGATTTTACCCGTCGGCGCTGGCAGATGGGTCAAATCTTTGTAGCTCTGAGCACGAGGCATTAATGTCGGTCTGGCGGCTTCTTTAGGCGGGGCGGTTAAGCATCCGCTCAGTAACATGACGG‑CAACCAAAAGAAATAAGCGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTGAGTTATTTTGTAAACCCGAAACCTGGATGGTCGAGGTTTGTCCGGTTTTACGATCTGTCACGTTCAACTGCAATTGACCATCGCGGTTGGCAATA‑TCGACAATATAATCGTTGGTCACCATGCGGCCCGGTTTACCGGTATTAATATTCGACAGTAGCCCACCTAAAATTTGTGACTGGATGGCC > NC_000913/1101440‑1101909 | aTTGCCGTGGCGCTTTGCGGAACAGCAGTGGAGAAGTTACTTGCCGGGTAGGGTTTAAATTGCCCGGTTTCGTCCTGAATGTTGTATACCGAAACAAAGATTTTACCCGTCGGCGCTGGCAGATGGGTCAAATCTTTGTAGCTCTGAGCACGAGGCATTAATGTCGGTCTGGCGGCTTCTTTAGGCGGGGCGGTTAAGCATCCGCTCAGTAACATGACGG‑CAACCAAAAGAAATAAgcg < 1:476492/239‑1 (MQ=255) ccGTGGCGCTTTGCGGAACAGCAGTGGAGAAGTTACTTGCCGGGTAGGGTTTAAATTGCCCGGTTTCGTCCTGAATGTTGTATACCGAAACAAAGATTTTACCCGTCGGCGCTGGCAGATGGGTCAAATCTTTGTAGCTCTGAGCACGAGGCATTAATGTCGGTCTGGCGGCTTCTTTAGGCGGGGCGGGTAAGCATCCGCTCAGTAACATGACGG‑GAAACAAAAGAAAAAAAAGCTGc > 1:922259/1‑239 (MQ=255) cGTGGCGCTTTGCGGAACAGCAGTGGAGAAGTTACTTGCCGGGTAGGGTTTAAATTGCCCGGTTTCGTCCTGAATGTTGTATGCCGAAACAAAGATTTTACCCGTCGGCGCTGGCAGATGGGTCAAATCTTTGTAGCTCTGAGCACGAGGCATTAATGTCGGTCTGGCGGCTTCTTTAGGCGGGGCGGTTAAGCATCCGCTCAGTAACATGACGG‑CAACCAAAAGAAATAAGCGCTGCa < 2:137846/239‑1 (MQ=255) gcgcTTTGCGGAACAGCAGTGGAGAAGTTACTTGCCGGGTAGGGTTTAAATTGCCCGGTTTCGTCCTGAATGTTGTATACCGAAACAAAGATTTTACCCGTCGGCGCTGGCAGATGGGTCAAATCTTTGTAGCTCTGAGCACGAGGCATTAATGTCGGTCTGGCGGCTTCTTTAGGCGGGGCGGTTAAGCATCCGCTCAGTAACATGACGG‑CAACCAAAAGAAAAAAGCGCTGCATGat > 1:114178/1‑239 (MQ=255) ttGCGGGAGAGCAGTGGAGATGTTACTAGCCGGGAAGGGTTTAAATTCCGCGGTTTGGTTCTTAAAGTTGTTTACCGAACCAAAGATTTTATCCGGCGGCGCTGGCAGATGGGTCAGATCTTTGTAGCTCTGAGGACGAGGCATTAATGTCGGTCTGGCGGCTTCTTTAGGCGGGGCGGTTATGCATCCCCTCAGTAACATGACGG‑GAACCAAAAGAAATAAGCACTGCATAATTA‑ttt > 2:295938/1‑239 (MQ=255) tGCGGAACAGCAGTGGAGAAGTTACTTGCCGGGTAGGGTTTAAATTGCCCGGTTTCGTCCTGAATGTTGTATACCGAAACAAAGATTTTACCCGTCGGCGCTGGCAGATGGGTCAAATCTTTGTAGCTCTGAGCACGAGGCATTAATGTCGGTCTGGCGGCTTCTTTAGGCGGGGCGGTTAAGCATCCGCTCAGTAACATGACGG‑CAACCAAAAGAAATAAGCGCTGCATGATTA‑tttt < 2:529501/239‑1 (MQ=255) gTTACTTGCCGGGTAGGGTTTAAATTGCCCGGTTTCGTCCTGAATGTTGTATACCGAAACAAAGATTTTACCCGTCGGCGCTGGCAGATGGGTCAAATCTTTGTAGCTCTGAGCACGAGGCATTAATGTCGGTCTGGCGGCTTCTTTAGGCGGGGCGGTTAAGCATCCGCTCCGTAACATGACGG‑CAACCAAAAGAAAAAAACGCTGCCTGATTA‑TTTTCCTTTTTAAACTGGGGCTTa > 1:98188/1‑239 (MQ=255) ggTAGGGTTTAAATTGCCCGGTTTCGTCCTGAATGTTGTATACCGAAACAAAGATTTTACCCGTCGGCGCTAGCAGATGGGTCAAATCTTTGTAGCTCTGAGCACGAGGCATTAATGTCGGTCTGGCGGCTTCTTTAGGCGGGGCGGTTAAACATCCGCTCAGTAACATGACGG‑CAACCCAAAGAAAAAAGAGCCGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTg > 1:942658/1‑239 (MQ=255) aGGGTTTAAATTGCCCGGTTTCGTCCTGAATGTTGTATACCGAAACAAAGATTTTACCCGTCGGCGCTGGCAGATGGGTCAAATCTTTGTAGCTCTGAGCACGAGGCATTAATGTCGGTCTGGCGGCTTCTTTAGGCGGGGCGGTTAAGCATCCGCTCAGTAACATGACGG‑CAACCAAAAGAAATAAGCGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTGAg < 1:499627/238‑1 (MQ=255) gTTTAAATTGCCCGGTTTCGTCCTGAATGTTGTATACCGAAACAAAGATTTTACCCGTCGGCGCTGGCAGATGGGTCAAATCTTTGTAGCTCTGAGCACGAGGCATTAATGTCGGTCTGGCGGCTTCTTTAGGCGGGGCGGTTAAGCATCCGCTCAGTAACATGACGG‑CAACCAAAAGAAATAAgcgc < 1:6271/188‑1 (MQ=255) gTTTAAATTGCCCGGTTTCGTCCTGAATGTTGTATACCGAAACAAAGATTTTACCCGTCGGCGCTGGCAGATGGGTCAAATCTTTGTAGCTCTGAGCACGAGGCATTAATGTCGGTCTGGCGGCTTCTTTAGGCGGGGCGGTTAAGCATCCGCTCAGTAACATGACGG‑CAACCAAAAGAAATAAGCGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTGAGTTa < 2:418296/238‑1 (MQ=255) gCCCGGTTTCGTCCTGAATGTTGTATACCGAAACAAAGATTTTACCCGTCGGCGCTGGCAGATGGGTCAAATCTTTGTAGCTCTGAGCACGAGGCATTAATGTCGGTCTGGCGGCTTCTTTAGGCGGGGCGGTTAAGCATACGCTCAGTAAAATAACGG‑GAAACAAAAGAAATAAACGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTTAGTtttttttttaa > 1:842104/1‑233 (MQ=255) cccGGTTTCGTCCTGAATGTTGTATACCGAAACAAAGATTTTACCCGTCGGCGCTGGCAGATGGGTCAAATCTTTGTAGCTCTGAGCACGAGGCATTAATGTCGGTCTGGCGGCTTCTTTAGGCGGGGCGGTTAAACATCCGCTCAGTTACATTACGG‑CCAACAAAAAAAAAAAGCGCTGGCTGATTATTTTTCTTTTTGAAG‑AGGGGCTTAAAAATCGGTTAGGTTATTTTTTaaaa > 2:403962/1‑237 (MQ=255) cccGGTTTCGTCCTGAATGTTGTATACCGAAACAAAGATTTTACCCGTCGGCGCTGGCAGATGGGTCAAATCTTTGTAGCTCTGAGCACGAGGCATTAATGTCGGTCTGGCGGCTTCTTTAGGCGGGGCGGTTAAACATCCCCCCCGTAAAATGACGG‑CCACCCAAAGAAATAAGGGCTGCATGATTT‑TTTTCCTTTTGAAGCTGGGGGTTAAAAATCGGTTGGGTTTTTTTTTaaaa > 1:902652/1‑237 (MQ=255) cccGGTTTCGTCCTGAATGTTGTATACCGAAACAAAGATTTTACCCGTCGGCGCTGGCAGATGGGTCAAATCTTTGTAGCTCTGAGCACGAGGCATTAATGTCGGTCTGGCGGCTTCTTTAGGCGGGGCGGGTAAGCATTCGCTCCGTAACATGACGG‑CAACCCAAAAAAAAAAGCGCTGCCTGgtta > 2:6271/1‑188 (MQ=255) aaTGTTGTATACCGAAACAAAGATTTTACCCGTCGGCGCTGGCAGATGGGTCAAATCTTTGTAGCTCTGAGCACGAGGCATTAATGTCGGTCTGGCGGCTTCTTTAGGCGGGGCGGTTAAGCATCCGCCCAGTAACATGACGG‑CAACCAAAAGAAAAAAACGCCGCCTGATTT‑TTTTTCTTTTGAAACTGGGGCTTAAAAAACGGTTTAGGTTTTTTTTTAACCCGAAACCTggggggt > 2:210457/1‑234 (MQ=255) aaaCAAAGATTTTACCCGTCGGCGCTGGCAGATGGGTCAAATCTTTGTAGCTCTGAGCACGAGGCATTAATGTCGGTCTGGCGGCTTCTTTAGGCGGGGCGGTTAAGCATCCGCTCAGTAACATGACGG‑CAACCAAAAGAAAAAAGAGCTGCATGATTT‑TTTTTCTTTTGAAACATGGGCTTAAAAAACGGTTGAGTTTTTTTTTTAACCCGAAACCTGGGTGGTCGTGGTTTTTTCgg > 2:373250/1‑239 (MQ=255) aTTTTACCCGTCGGCGCTGGCAGATGGGTCAAATCTTTGTAGCTCTGAGCACGAGGCATTAATGTCGGTCTGGCGGCTTCTTTAGGCGGGGCGGTTAAGCATCCGCTCAGTAACATGACGG‑CAACCAAAAGAAATAAGCGCTGCATGATTA‑TTTTCCTTATGAAGCTg < 1:227412/168‑1 (MQ=255) cccGTCGGCGCTGGCAGATGGGTCAAATCTTTGTAGCTCTGAGCACGAGGCATTAATGTCGGTCTGGCGGCTTCTTTAGGCGGGGCGGTTAAGCATCCGCTCAGTAACATGACGG‑CAACCAAAAGAAATAAGCGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTGAGTTATTTTGTAAACCCGAAACCTGGATGGTCGAGGTTTGTCCGGTTTTACGATCTGTc < 2:236626/239‑1 (MQ=255) tCGGCGCTGGCAGATGGGTCAAATCTTTGTAGCTCTGAGCACGAGGCATTAATGTCGGTCTGGCGGCTTCTTTAGGCGGGGCGGTTAAAAATCCTCCCCGGAAAATGTCCG‑CAACCCAAAGAAAAAAAAGCTGCACGATTT‑TTTTTCTTTTGGAGCTTGGGGTTaaaa > 2:227412/1‑168 (MQ=255) ttGTAGCTCTGAGCACGAGGCATTAATGTCGGTCTGGCGGCTTTTTTAGGCGGGGCGGGTAAAGATTCGCCCCGTAATATGGCGG‑CAAACCAAAGAAATAACCGCTTGATTATTA‑TTTTTCTTATGAAGCCGGGGCTTATAAATCGGTTGTGTTTATTTGTTAACCCGAAACCTGGATGGTTGAGGGTTGTTCGGGTTTACGATCTGTCACGTGCTACTGCAATTGACCCTtgcg > 2:567230/1‑235 (MQ=255) gTAGCTCTGAGCACGAGGCATTAATGTCGGTCTGGCGGCTTCTTTAGGCGGGGCGGTTAAACATCCGCCCAGTAAAATGACGG‑GCAACAAAAGAAAAAAGCGCTGCATGATTA‑TTTTTCTTTTGAAGCTGGGGCTTAAAAAACGGGTGGGGTATTTTGTAAACCCCAAACCTGGGTGGGCGAGGGTTGTCCGGGTTTTCGATCTTTCACGTTCAAATTCAATTTACCCTCCCGGTTGGc > 1:314479/1‑239 (MQ=255) ctGAGCACGAGGCATTAATGTCGGTCTGGCGGCTTCTTTAGGCGGGGCGGTTAAGCATCCGCTCAGTAACATGACGG‑CAACCAAAAGAAATAAGCGCTGCATTATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTGAGTTATTTTGTAAACCCGAAACCTGGATGGTCGAGGTTTGTCCGGTTTTACGATCTGTCACGTTCAACTGCAATTGACCATCGCGGTTGGCAATA‑Tc < 1:137319/239‑1 (MQ=255) tGAGCACGAGGCATTAATGTCGGTCTGGCGGCTTCTTTAGGCGGGGCGGGTTAGCATCCGCTCAGTGACATGACGG‑CCAACCAAAGAAAAAAACGCTTCAAGGTTA‑TTTTTCTTATGAAGCTGGGGGTTAAAAAACGGGTGAGTTCTTTTGTAAAACCGAAATCTGGATGGGCGAGGTTTTGTCGGTTTTTCGATCTGTCTCGTTCAACAGCAAATGACCATCCCGGTTGGGaaattcg > 2:338758/1‑234 (MQ=255) tGAGCACGAGGCATTAATGTCGGTCTGGCGGCTTCTTTAGGCGGGGCGGGTAAACATCCCCCCAGTAAAATGACGG‑CAAACAAAAGAAAAAAGCGCTGCATGATTA‑TTTTTCTTATGAAACTGGGGGTTAAAAAACGGGTGTGTTATTTTTTAAAACCCAAAACTGGATGGGCGAGGTTTTTCCGGGTTTTTGATCTTTTACGTTCCACTGCAATTTACCAACTCCGTTGGGAATA‑Tct > 2:672626/1‑238 (MQ=255) aGCACGAGGCATTAATGTCGGTCTGGCGGCTTCTTTAGGCGGGGCGGTTAAGCCTCCGCTCCGTAACATGACGG‑CAAACAAAAGAAATAAGCGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAAACGGTTGAGTTATTTTTTAAAACCGCAAACTGGATGGTCGAGGGTTGTCCGGGTTTTCGATCTGTCACGTTTAACTGCAATTGACCATCGCGGGTGGCAATA‑TCggc > 1:855899/1‑237 (MQ=255) gAGGCATTAATGTCGGTCTGGCGGCTTCTTTAGGCGGGGCGGTTAAGCATCCGCTCAGTAACATGACGG‑CAACCAAAAGAAATAAGCGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTGAGTTATTTTGTAAACCCGAAACCTGGATGGTCGAGGTTTGTCCGGTTTTACGATCTGTCACGTTCAACTGCAATTGACCATCGCGGTTGGCAATA‑Tc < 1:341686/231‑1 (MQ=255) cATTAATGTCGGTCTGGCGGCTTCTTTAGGCGGGGCGGTTAAGCATCCGCTCAGTAACATGACGG‑CAACCAAAAGAAATAAGCGCTGCATGATTA‑TTTTc < 1:146319/100‑1 (MQ=255) cATTAATGTCGGTCTGGCGGCTTCTTTAGGCGGGGCGGTTAAGCATCCGCTCAGTAACATGACGG‑CAACCAAAAGAAATAAGCGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTGAGTTATTTTGTAAACCCGAAACCTGGATGGTCGAGGTTTGTCCGGTTTTACGATCTGTCACGTTCAACTGCAATTGACCATCGCGGTTGGCAATA‑TCGACa < 1:951622/231‑1 (MQ=255) tAATGTCGGTCGGGCGGCTTCTTTAGGCGGGGCGGTTAAGCATCCGCTCAGTAACATGACGG‑CAACCAAAAGAAATAAGCGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTTAGTTATTTTGTAAACCCGAAACCTGGATGGTCGAGGTTTGTCCGGTTTTACGATCTGTCACGTTCAACTGCAATTGACCATCGCGGTTGGCAATA‑TCGACAATATAATCGtt < 2:829384/239‑1 (MQ=255) tGTCGGTCTGGCGGCTTCTTTAGGCGGGGCGGTTAAGCATCCGCCCCGGAACATGGCGG‑CAAACAAAAAAAAAAAGCGCTGCATGATTA‑TTTTCCTTATGAAGGTGGGGCTTAAAAATCGGTTGAGTTTTTTTTTAAAACCCAAACCTGGATGGTCGAGGGTTGTCCGGGTTTACGATCTGTCACGTTCAACTGCAATTGGCCCTCCCGGGTGGGAAAA‑TCGACAATATaa > 2:341686/1‑231 (MQ=255) gTCGGTCTGGCGGCTTCTTTAGGCGGGGCGGTTAAGCATCCGCTCAGTAACATGACGG‑CAACCAAAAGAAATAAGCGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTGAGTTATTTTGTAAACCCGAAACCTGGATGGTCGAGGTTTGTCCGGTTTTACGATCTGTCACGTTCAACTGCAATTGACCATCGCGGTTGGCAATA‑TCGACAATATAATCGTTGGTc < 1:672626/239‑1 (MQ=255) tCGGTCTGGCGGCTTCTTTAGGCGGGGCGGTTAAACATCCGCCCAGTAACATGACGG‑CAACCCAAAGAAAAAAACGCCGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAAACGGTTGAGTTATTTTTTAAAACCGAAACCTGGATGGTCGAGGTTTTTCCGGGTTTACGATCTGTCACGTTCAACTGCAATTGACCATCGCGGTTGGCAATA‑TCGACAATATAATCGTTGGTc > 1:306341/1‑238 (MQ=255) ggTCTGGCGGCTTCTTTAGGCGGGGCGGTTTAGCATCCCCCCCGGAACATTACGG‑CAACCCAAAAAAAAAAACGCCGCCTGATTA‑TTTTCCTTATGAAGc > 2:146319/1‑100 (MQ=255) ggTCTGGCGGCTTCTTTAGGCGGGGCGGTTAAGCATCCGCCCAGTAACATGACGG‑CAACCCAAAGAAATAAACGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTGAGTTTTTTTGTAAAACCGAAACCTGGATGGTCGAGGTTTGTCCGGGTTTACGATCTTTCACGTTCAACTGCAATTTACCCTCGCGGGTGGCAATA‑TCGACAATATAATCGTTGGTCAc > 1:910546/1‑238 (MQ=255) ggTCTGGCGGCTTCTTTAGGCGGGGCGGTTAAGCATCCCGTCCGTAAAATTACGG‑GGACCCAAAAAAAAAAACGCGGCATGGTTA‑TTTTTCTTTTGGAGCTGGGGGTTTAAAAACGGTTGAGTTTTTTTTTTAAACCGAAAACAGGATGGGTGAGGGTTTTTCGGGTTTTCGAATTGTCACGTTCAACTGCAATTGACCATCGCGGGTTGCTATA‑TCCACAAAATAAACGt > 2:951622/1‑231 (MQ=255) ggTCTGGCGGCTTCTTTAGGCGGGGCGGTTAAACATCCGCCCCGTAAAATGAAGGCCAACCAAAA‑AAAAAAGCGCTGCCTGATTA‑TTTTTCTTATGAAGCTGGGGCTTAAAAAACGGGTGAGTTATTTTTTTAAACCGAAACCTGGATGGTCGGGGTTTGTTCGGTTTTTCGATCTGTCACGTTCAACTGCAATTTACCATCGCGGTTGGGCATATTCAACAA‑ATAATCCTTGGTCAcc > 2:554156/1‑239 (MQ=255) gTCTGGCGGCTTCTTTAGGCGGGGCGGTTAAACCTCCCCTCAGTAAAATGGCGG‑CAACCAAAAGAAAAAAACGCTGCATGATTA‑TTTTCCTTTTTAAGCCGGGGGTTAAAAAACGGGTGAGGTATTTTTTTAACCCCGAAACTGGGTGGGCGAGGGTTTTTCGGGTTTTCGATCTGTCACGTTCCACTGCAATTTACCACACCGGTTGGGAAAA‑TCGGCAAATTAATCGTTGGTCAcc > 2:549714/1‑238 (MQ=255) tGGCGGCTTCTTTAGGCGGGGCGGTTAAGCATCCGCTCAGTAACATGACGG‑CAACCAAAAGAAATAAGCGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTGAGt < 1:197603/119‑1 (MQ=255) ggcggcTTCTTTAGGCGGGGCGGTTAAGCATCCGCTCAGTAACATGACGG‑CAACCAAAAGAAATAAGCGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTGAGTTATTTTGTAAACCCGAAACCTGGATGGTCGAGGTTTGTCCGGTTTTACGATCTGTCACGTTCAACTGCAATTGACCATCGCGGTTGGCAATA‑TCGACAATATAATCGTTGGTCACCATGCg < 1:373250/239‑1 (MQ=255) ggcTTCGTTAGGCGGGGCGGGTAAGCATCCGCTCAGTAACATGACGG‑CAACCAAAAGAAAGAAGCGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTGAGTTATTTTGTAAGCCCGAAACCTGGATGGTCGAGGTTTGTCCGGTTTTACGATCTGTCCCGTTCAACTGCAATTGGCCATCGCGGTTGGCTTTA‑TCGACAATAGAATTGTTGGTCACCAGGCGGcc < 2:942658/239‑1 (MQ=255) cggTTAAGCATCCGCTCAGTAACATGACGG‑CAACCAAAAGAAATAAGCGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTGAGTTATTTTGTAAACCCGAAACCTGGATGGTCGAGGTTTGTCCGGTTTTACGATCTGTCACGTTCAACTGCAATTGACCATCGCGGTTGGCAATA‑TCGACAATATAATCGTTGGTCACCATGCGGCCCGGTTTACCGGTATTa < 1:549714/238‑1 (MQ=255) tAAGCATCCGCTCATTAACATGACAG‑CAACCAAAAGAAATAAGCGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTGAGTTATTTTGTAACCCCGAAACCTGGAGGGTCGAGGTTTGTCCGGTTTTACGATCTGTCACGTTCAACTGCAATTGACCATCGCGGTTGGCAATA‑TCGACAATATAATCGTTGGTCACCATGCGGCCCGGTTTACCGGTATTAATAtt < 2:108466/239‑1 (MQ=255) cATCCGCTCAGTAACATGACGG‑CAACCAAAAGAAATAAGCGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTGAGTTATTTTTTAAACCCGAAACCTGGATGGTCGAGGTTTGTCCGGTTTTACGATCTGTCACGTTCAACTGCAATTGACCATCGCGGTTGGCAATA‑TCGACAATATAATCGTTGGTCACCATGCGGCCCGGTTTAc > 2:212993/1‑222 (MQ=255) cATCCGCTCAGTAACATGACGG‑CAACCAAAAGAAATAAGCGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTGAGTTATTTTGTAAACCCGAAACCTGGATGGTCGAGGTTTGTCCGGTTTTACGATCTGTCACGTTCAACTGCAATTGACCATCGCGGTTGGCAATA‑TCGACAATATAATCGTTGGTCACCATGCGGCCCGGTTTAc < 1:212993/222‑1 (MQ=255) cGCTCAGTAACATGACGG‑CAACCAAAAGAAATAAGCGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTGAGTTATTTTGTAAACCCGAAACCTGGATGGTCGAGGTTTGTCCGGTTTTACg < 2:898341/135‑1 (MQ=255) cGCTCAGTAACATGACGG‑CAACCAAAAGAAATAAGCGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTGAGTTATTTTGTAAACCCGAAACCTGGATGGTCGAGGTTTGTCCGGTTTTACg > 1:898341/1‑135 (MQ=255) cGCTCAGTAACATGACGG‑CAACCAAAAGAAATAAGCGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTGAGTTATTTTGTAAACCCGAAACCTGGATGGTCGAGGTTTGTCCGGTTTTACGATCTGTCACGTTCAACTGCAATTGACCATCGCGGTTGGCAATA‑TCGACAATATAATCGTTGGTCACCATGCGGCCCGGTTTAc < 1:882138/218‑1 (MQ=255) cGCTCAGTAACATGACGG‑CAACCAAAAGAAATAAGCGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTGAGTTATTTTGTAAACCCGAAACCTGGATGGTCGAGGTTTGTCCGGTTTTACGATCTGTCACGTTCAACTGCAATTGACCATCGCGGTTGGCAATA‑TCGACAATATAATCGTTGGTCACCATGCGGCCCGGTTTAc > 2:882138/1‑218 (MQ=255) aGTAACATGACGG‑CAACCAAAAGAAATAAGCGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTGAGTTATTTTGTAAACCCGAAACCTGGATGGTCGAGGTTTGTCCGGTTTTACGATCTGTCACGTTCAACTGCAATTGACCATCGCGGTTGGCAATA‑TCGACAATATAATCGTTGGTCACCATGCGGcc > 1:662345/1‑205 (MQ=255) aGTAACATGACGG‑CAACCAAAAGAAATAAGCGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTGAGTTATTTTGTAAACCCGAAACCTGGATGGTCGAGGTTTGTCCGGTTTTACGATCTGTCACGTTCAACTGCAATTGACCATCGCGGTTGGCAATA‑TCGACAATATAATCGTTGGTCACCATGCGGcc < 2:662345/205‑1 (MQ=255) tGACGG‑CAACCAAAAGAAATAAGCGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTGAGTTATTTTGTAAACCCGAAACCTGGATGGTCGAGGTTTGTCCGGTTTTACGATCTGTCACGTTCAACTGCAATTGACCATCGCGGTTGGCAATA‑TCGACAATATAATCGTTGGTCACCATGCGGCCCGGTTTACCGGTATTAATATTCGACAGTAGCCCACCTaaaa > 2:126964/1‑239 (MQ=255) cGG‑CAACCAAAAGAAATAAGCGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTGAGTTATTTTGTAAACCCGAAACCTGGATGGTCGAGGTTTGTCCGGTTTTACGATCTGTCACGTTCAACTGCAATTGACCATCGCGGTTGGCAATA‑TCGACAATATAATCGTTGGTCACCATGCGGCCCGGTTTACCGGTATTAATATTCGACAGTAGCCCACCTAAAAttt > 2:847500/1‑239 (MQ=255) aaCCAAAAGAAATAAGCGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTGAGTTATTTTGTAAACCCGAAACCTGGATGGTCGAGGTTTGTCCGGTTTTACGATCTGTCACGTTCAACTGCAATTGACCATCGCGGTTGGCAATA‑TCGACAATATAATCGTTGGTCACCATGCGGCCCGGTTTACCGGTATTAATATTCGACAGTAGCCCACCTAAAATTtgtg < 1:554156/238‑1 (MQ=255) aaaGAAATAAGCGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTGAGTTATTTTGTAAACCCGAAACCTGGATGGTCGAGGTTTGTCCGGTTTTACGATCTGTCACGTTCAACTGCAATTGACCATCGCGGTTGGCAATA‑TCGACAATATAATCGTTGGTCACCATGCGGCCCGGTTTACCGGTATTAATATTCGACAGTAGCCCACCTAAAATTTGTGACTGGa < 1:126964/239‑1 (MQ=255) aaTAAGCGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTGAGTTATTTTGTAAACCCGAAACCTGGATGGTCGAGGTTTGTCCGGTTTTACGATCTGTCACGTTCAACTGCAATTGACCATCGCGGTTGGCAATA‑TCGACAATATAATCGTTGGTCACCATGCGGCCCGGTTTACCGGTATTAATATTCGACAGTAGCCCACCTAAAATTTGTGACTGGATgg < 1:211085/237‑1 (MQ=255) aaTAAGCGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTGAGTTATTTTGTAAACCCGAAACCTGGATGGTCGAGGTTTGTCCGGTTTTACGATCTGTCACGTTCAACTGCAATTGACCATCGCGGTTGGCAATA‑TCGACAATATAATCGTTGGTCACCATGCGGCCCGGTTTACCGGTATTAATATTCGACAGTAGCCCACCTAAAATTTGTGACTGGATGGcc < 2:114178/239‑1 (MQ=255) aaTAAGCGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTGAGTTATTTTGTAAACCCGAAACCTGGATGGTCGAGGTTTGTCCGGTTTTACGATCTGTCACGTTCAACTGCAATTGACCATCGCGGTTGGCAATA‑TCGACAATATAATCGTTGGTCACCATGCGGCCCGGTTTACCGGTATTAATATTCGACAGTAGCCCACCTAAAATTTGTGACTGGATGGc < 1:504565/238‑1 (MQ=255) aaTAAGCGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTGAGTTATTTTGTAAACCCGAAACCTGGATGGTCGAGGTTTGTCCGGTTTTACGATCTGTCACGTTCAACTGCAATTGACCATCGCGGTTGGCAATA‑TCGACAATATAATCGTTGGTCACCATGCGGCCCGGTTTACCGGTATTAATATTCGACAGTAGCCCACCTAAAATTTGTGACTGGATGGc < 2:306341/238‑1 (MQ=255) | ATTGCCGTGGCGCTTTGCGGAACAGCAGTGGAGAAGTTACTTGCCGGGTAGGGTTTAAATTGCCCGGTTTCGTCCTGAATGTTGTATACCGAAACAAAGATTTTACCCGTCGGCGCTGGCAGATGGGTCAAATCTTTGTAGCTCTGAGCACGAGGCATTAATGTCGGTCTGGCGGCTTCTTTAGGCGGGGCGGTTAAGCATCCGCTCAGTAACATGACGG‑CAACCAAAAGAAATAAGCGCTGCATGATTA‑TTTTCCTTATGAAGCTGGGGCTTAAAAATCGGTTGAGTTATTTTGTAAACCCGAAACCTGGATGGTCGAGGTTTGTCCGGTTTTACGATCTGTCACGTTCAACTGCAATTGACCATCGCGGTTGGCAATA‑TCGACAATATAATCGTTGGTCACCATGCGGCCCGGTTTACCGGTATTAATATTCGACAGTAGCCCACCTAAAATTTGTGACTGGATGGCC > NC_000913/1101440‑1101909 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |