| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,173,363 | Δ2 bp | intergenic (‑1/+1) | gatC ← / ← gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,173,361 | 0 | C | . | 80.4% | 162.4 / 27.4 | 51 | pseudogene (2/442 nt) | gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| Reads supporting (aligned to +/- strand): ref base C (1/9); new base . (32/9); total (33/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.29e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| * | NC_000913 | 2,173,362 | 0 | C | . | 82.0% | 159.5 / 21.3 | 51 | pseudogene (1/442 nt) | gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| Reads supporting (aligned to +/- strand): ref base C (1/8); new base . (32/9); total (33/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.30e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCA‑CGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCA > NC_000913/2173143‑2173599 || gtgAAAACCAATAGTGTGCGTCGCGACCCATAGGGTGATGCTGAGAATGATGACACCCGAGATGAAGGTGCGAAACAGATTCCCACGATCAACGGCGACCGCCAGCGCCA‑CGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCagcagc < 2:982975/238‑1 (MQ=255) tacAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCA‑CGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAG‑CAATTAAAATGGGGAGGGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAgcagca > 1:1200544/3‑238 (MQ=255) acAACCCACTAGTCGGCGTCGCGCTCCACAGCGTTATACTCAAAATGATGACACCCGATATTAAGGTGCGGAACAGATTCCCCCGAGGCCCGGCACCCCCCATCGCCA‑CGAAAAAGCCGATGGGGGCAAGATAGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCT‑TGCGGATCCCA‑‑CCGCCGTATGTCCCAGCAGCaa < 2:930085/237‑1 (MQ=255) tGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCA‑CGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGcc > 1:599045/1‑239 (MQ=255) cGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCA‑CGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCaa > 1:153038/1‑239 (MQ=255) tGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCA‑CGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAccgccg > 1:467856/1‑239 (MQ=255) tGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCA‑CGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCCGAccgccg > 1:1342507/1‑239 (MQ=255) tGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCA‑CGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGCCCAATCAGGAACTCCTGAccgccg > 1:754008/1‑239 (MQ=255) tGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCA‑CGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAG‑CAATTAAAATGGCGAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAAATCCTGAccgacg > 1:665972/1‑239 (MQ=255) gaCACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCA‑CGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTa > 1:1411473/1‑239 (MQ=255) cacCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCA‑CGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCACCC‑‑CCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGACCTTCGCCTGTaa > 2:369589/1‑238 (MQ=255) cacCCGAGATTAAGGAGCGGAACAGATTTCCACGATGAACGGCGACCGCCATCGCCA‑CGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAG‑CAATTAAAATGGTGAGAGGGAAAAAAATCA‑GGCT‑TGCCGAAACCA‑‑CCGCCGTATGACCCAGCAGCAACGCCAGATCAAGACAAATCAGGAACCCCCGACCGCCGAACTCCCCCTGaaa > 2:1336277/1‑238 (MQ=255) gaGGTGCGGAAAAGATGCCCACAGTCCACGGCCCCCGCCACGCCCA‑CGAAGAAGCCGATGGGGGCAAGATCGCCAAAGGTCAGCCCTTGATTCCCCGCCACACAAACAG‑CAATAAAAATGGGGAGGGGTAAAAAAACCG‑GGCT‑TGCCGAT‑CC‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc < 2:1200544/238‑1 (MQ=255) ggTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCA‑CGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAAATCCTGACCGCCCAACTTCGCCTGGAAACGACTACGaa > 1:120021/1‑235 (MQ=255) cGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCA‑CGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCtt > 1:1332186/1‑239 (MQ=255) cGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCA‑CGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGAAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAACCTGCtt > 2:924261/1‑239 (MQ=255) cACGATGCACGGCGACCGCCATCGCCA‑CGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAG‑CAATTAAAATGGTGAGCGGGATAAAAATCA‑GGCT‑TGCCGAAACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAACGCCGAACTTCGCCTGTAAACGACTACGAAACAGCATAGCGATggtgcat > 2:615508/1‑234 (MQ=255) cGATGCACGGCGACCGCCATCGCCA‑CGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCt > 1:697960/1‑223 (MQ=255) cccGGCGCCCCCCATCGCCA‑GGAAGAGGCGGAGGGTGGAAAGATCGCCAAACGGCAGCCCCTAATTCCCCGGCCCACAAACAC‑CAATAAAAATGGTGAGGGGAAAAAAAATCA‑GGCT‑GGCCGAT‑CC‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc < 2:207144/211‑1 (MQ=255) cACGGCGACCGCCATCGCCA‑CGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAcca > 1:54578/1‑238 (MQ=255) gccgacGCCATACCCACCGAAGAACCCGAGGGTGGAAGTGACGCCAAACGTCCGCACCTTATTCCCCCCAACAAAACCAG‑CATTAAAAATGAGGAG‑GGGGTAAAAATCA‑GGGT‑TGGCCATTAC‑CACCGCCGTATGTCCCAGCAGCACCGCCGGATCAAGGCCAAGCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTa < 2:431897/200‑1 (MQ=255) gCCATCGCCA‑CGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCg > 1:207144/1‑213 (MQ=255) ccgtCGCAA‑CGAAGAAGCAGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAG‑CAATTAAAATGGTGAGGGGGATAAAAACCG‑GGCT‑TGCCGATAC‑‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCaa < 2:7273/153‑1 (MQ=255) gaagaaGCCGATGGTGGCAAGATCGCCAAACGGCACCCCCTGATTACCCGGCACACAAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTc > 1:7273/1‑156 (MQ=255) tggtggCAAGACCGCCAAAGGGCGGCCCCTAATTCCCCGGCACCCAAACAC‑CAATAAAAATGGTGAGGGGGATAAAAATCA‑GGCT‑TGCCGATAC‑‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTagc < 1:107116/239‑1 (MQ=255) ggtggCAAGATCGCAAAACGGCAGCACCTGATACCCCGGCCCACAACCAG‑AAATAAAAATGGTGAGTGGGATAAAAACCA‑GCCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCaa < 2:1139801/117‑1 (MQ=255) tggCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCCCACAAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCCTGATGGGTTTAATCACCCGTGGCATTagcagc > 1:718364/1‑239 (MQ=255) cAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAgg > 2:1143344/1‑134 (MQ=255) cAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAgg < 1:1143344/134‑1 (MQ=255) tCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCa > 1:1139801/1‑117 (MQ=255) cccTAATTCCCCGCCACACAAACAG‑CAATAAAAATGGTGGGTGGGAAAAAACCCA‑GGCT‑TGCCGAT‑CC‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCg < 2:361564/171‑1 (MQ=255) gaatACCCGG‑ACAAAAAAAGACAATTAAAAAGGTGAGGGGGAAAAAAACCACGGCT‑GGCCAAT‑CC‑CCCCGCCGTAGGCCCCAGCAGCAACGCGGGACAAAGGCCAACCAGGAACCCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAg < 2:467856/236‑1 (MQ=255) cgcgcccacaAAGAG‑CAAAAAAAAGGGTGGGTGAGAAAAAACTC‑‑GGCTGTGCC‑AAACC‑CCCCGCCGTATGCCCCAGCAGCAACGCCGGATAAAGGCAAACCAGGAACTCCGGCCCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCCCCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAAt < 2:54578/233‑1 (MQ=255) ccGGCACACAAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAccatc > 1:361564/1‑172 (MQ=255) ggCACACAAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTCCCGCACGCTGCAATac > 2:1391042/1‑239 (MQ=255) acacaAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATaca > 2:97948/1‑237 (MQ=255) aaaCAG‑CAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTg > 1:40059/1‑239 (MQ=255) g‑CAATTAAAATGGTGAGTGGGAAAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCagcagc < 1:705318/66‑1 (MQ=255) g‑CAATTAAAATGGGGAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCagcagc > 2:705318/1‑66 (MQ=255) aTTAAAATGGTGAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGAt < 1:126957/140‑1 (MQ=255) aTTAAAATGGTGAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGAt > 2:126957/1‑140 (MQ=255) aTTAAAATGGTGAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACTCCTTTGACATCGTa > 1:78716/1‑239 (MQ=255) aTGGTGAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGc < 1:1165776/73‑1 (MQ=255) aTGGTGAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGc > 2:1165776/1‑73 (MQ=255) gAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCAtt > 2:772453/1‑172 (MQ=255) gAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCAtt < 1:772453/172‑1 (MQ=255) gAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGa > 1:1012237/1‑239 (MQ=255) aggggaaaaaaaaTCA‑GGC‑‑TGCCGA‑ATCCCCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACCCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGa < 1:1391042/230‑1 (MQ=255) aGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCcagcag > 2:124154/1‑50 (MQ=255) aGTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCcagcag < 1:124154/50‑1 (MQ=255) gTGGGATAAAAATCA‑GGCT‑TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATAAACCTTTGAAATCGTAACCCGAGAGGAt > 2:427614/1‑238 (MQ=255) tgcttcccgacccccCCGCCGTATGTCCAGCCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGcccc < 1:7278/230‑1 (MQ=255) tttgccgatccccccGCCGTATTCCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCGGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGccc < 1:948956/225‑1 (MQ=255) ccccGCCGTATGTCCCAGCAGCAACGCCGGTTCAAGGCCAACAAGGAACTCCTGCCCGCCGAACTTCGCCTGTAAACGACTACGCGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCa < 1:615508/239‑1 (MQ=255) ccccGCCGTATGCCCCAGAAGCAACGCCGGATCAAGCCCAATCAGAACCTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAACCCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCa < 2:1411473/239‑1 (MQ=255) || GTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCA‑CGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCT‑TGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCA > NC_000913/2173143‑2173599 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |