| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,782,908 | 0 | T | G | 33.9% | 78.5 / 14.0 | 67 | T252P (ACC→CCC) | gpsA | glycerol‑3‑phosphate dehydrogenase (NAD+) |
| Reads supporting (aligned to +/- strand): ref base T (8/33); new base G (21/0); total (29/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.33e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATA‑CTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCT‑GCGCGC‑TTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGTCGGTACAGGTAAGCACCAGATCGCC‑AAGCCCCGCCATGCCCAT‑AAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCG‑ACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCG‑CACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATA‑‑ACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACGCGGAAACTTTTGCCGCA > NC_000913/3782670‑3783145 | gCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATA‑CTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCT‑GCGCGC‑TTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGTCGGTACAGGt < 1:1922440/239‑1 (MQ=255) tCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATA‑CTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCT‑GCGCGC‑TTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTTCACGCCTGGTTGTTGGTACAGGTAAAGACCaaaatcccc > 2:1618458/1‑231 (MQ=255) cTCGCGCGTGTTTTTTCC‑CAATTGTATATTTTGAAAACTTCCCTCGTTTATTGCTATTCAACCGCCCAAGCGGGCCGCATTTGCGCGGTTTTCTTTAGTATTGCGTTGCCCTCCCCCCCCCTCCCCACT‑TTCCCCTGGCGCGC‑TTTGTCAATCCAGCCCCTGACCGCGCATCATCCAAAAACGGCGGTTACGCGACTGGTTGTCGGTACAGATAAGCAACAGATCGCA‑AAGCCCCGCCa < 2:1963321/239‑1 (MQ=255) tCGCGCGCGTTTTTTCCGCAATATAATA‑CTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCT‑GCGCGC‑TTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGTCGGTACAGGTAAGCCCCAGATCGCC‑AAGCCCCGCCAt < 1:2311298/239‑1 (MQ=255) ccgcgcgctTTTTTTCCGCAATATAATA‑CTTGATAAATTCCCTCGTTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGCCTTCTTTCGTATTGCGGTAGCCTTCCCCCACCGGACCAATCTTCTCCT‑GCGCGC‑TTTGTCCATCCATGCCCGGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGTTTGTGGGTACAGGTAAGCACCAGATCGCC‑AAGCCCCGCCAt < 2:42172/238‑1 (MQ=255) cgcgcgTTTTTTCCGCAATATAATA‑CTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCT‑GCGCGC‑TTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGGTACGCGACTGGGTGTCGGGACAGGGAAACACCACAACGCC‑AAGCCCCGCCACGc > 2:2058266/1‑238 (MQ=255) tcaaattaata‑CTTCATAAGTTTCCTCAGTTATTGCCATTCCAACGCCTGAGGGCTCGGTCATTTCGCGATCTCCTTCCGAATGTGGGAAGCCATCCTCCTCCTGACCATTCTACACCT‑GGACGC‑TTTGTCCACCCGTGCCTTGACCAAGAGCCACGCCAACAAGGCGGTTACGCGCTTGGTTGCCGGTGCGGGAAACCGCCACATCACC‑ACGCCCCGCCATGCCCAT‑AAAGGTGGCAg < 2:65693/233‑1 (MQ=255) ataaaga‑CTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGGGATCCCCCATTTCGGGGACTTCTTTCGTATTGCGGTAGCCTTCCCCCCCCTCACCAATCTTCCCCT‑GCCCGC‑TTTGTACATCCATGCCCTGACCGAGCATCATCCCAAAACGGCGGTTACGCGACTGGTTGTCGGTACAGGTAAGCACCAGATCGCC‑AAGCCCCGcc < 2:34760/210‑1 (MQ=255) gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCT‑GCGCGC‑TTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACACGACTGGTTGTCGGTACAGGGAAGCACCAGATCGCC‑AAACCCCGCCATGCCCCT‑AAAAGGGGCAGGGTCGGGACCCCgc > 1:371647/1‑239 (MQ=255) gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCT‑GCGCGC‑TTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTAAGCGACTGGGTGTCGGGGCAGGGAAGCACCCGAAAGCC‑CAACCCCGCCCAGcccccaa > 1:34760/1‑212 (MQ=255) gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCT‑GCGCGC‑TTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGGTACACGACCGGGTGTTGGGACAAGGAAGCACCAAAACGCC‑AAGCCCCGCCCCGCCCCTCAAAGGGGGCAGGGGGGGCCCCCac > 2:82930/1‑238 (MQ=255) ttgtGGAATTCCAACGCCGAGGAGTTGCCCCAGTTGGCGGACTTCTTGCGTAATGGGGTGTCCTCCCCCCACCTGCCCAATCTTCCCCT‑GCGCGC‑TTTGAACACCACTGCCCGGACCGAGCATCATGCCAAAACGGCGGTTACGCGTCTGGTTGTCGGTACAGGTAAGCGCCAGACCCCC‑AACCCCCGCCATGCCCAT‑AAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGAcgcg < 2:1143899/236‑1 (MQ=255) tCACCGCCGAAGCGAGGCGCCAGTTCGCGTACTTTTTTCGTATTGCGGTAGCCTTCCCCCACCTGCCCAATCTTCCCCT‑GCGCGC‑TTTGTACATCCATCCCCTGACCGAGCATCATGCCAAACCGGCGGTTACGCGACTGGTTGTCGTTACAGGTAAGCACCAGATCGCA‑AAGCCCCGCCATGCCCAT‑AAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCG‑ACATTTcagc < 2:1639335/239‑1 (MQ=255) tCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCCCCACCTGACCAATCTTCTCCT‑GCGCGT‑TTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGTCGGTACAGGTAAGCACCAGATCGCC‑AAGCCCCGCCATGCCCAT‑AAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCG‑ACATTTcagc < 1:1618458/239‑1 (MQ=255) ccaccccggaggCGGTGCGCCGTTCCGCAGATTTCTTTCGTATTGCGGTACCCTTCC‑CCCCCCGACCCATTCTTTCCTAGCGGGC‑TTTAAACATCAATGCCCTGCCGGAGCACCATGCAAAACCGGGGGTTACGGGATGGGTTGTCGGTAGAGGTAGGCCCCAGCCCGCC‑AAGCCCCGCCATGCCCAT‑AAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCG‑ACATTTcagc < 2:397921/228‑1 (MQ=255) ccGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCT‑GCGCGC‑TTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGTCGGGACAGGGAAGCCCCAAAACGCC‑CAGCCCCGCCCTGCCCAC‑AAAAGAGGCAGGGGGGGGACCCCGCCCCGCACCCAAACACGCACA‑TTCAGCCAGccc > 2:920177/1‑239 (MQ=255) tcttGCGTATTGCGGTAGCCTCCCACCCCCTGACCATTCTTCCCCT‑GCGCGC‑TTGGTACCTCCATGCCCTGACCGAGCATCATGCCAAACCGGCGGTTACGCGACTGGTTGTCGGTACAGGTAAGCCCCAGATCGCC‑AACCCCCGCCATGCCCAT‑AAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCG‑ACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCAtt < 2:654680/239‑1 (MQ=255) cGGTAGCCTTCCCCCACCTGACCAATCTTCTCCT‑GCGCGC‑TTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGTCGGTACGGGTAAGCACCAGATCGCC‑AAGCCCCGcc < 1:1725777/135‑1 (MQ=255) ccTTCCCCCCCCTGCCCAATCTTCCCCT‑GCGCGC‑TTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGTCGGTACAGGTAAGCCCCAGATCGCC‑AAGCCCCGCCATGCCCAT‑AAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCG‑ACATTTCAGCCAGCCCACGGGTGAt < 1:20264/203‑1 (MQ=255) ccTTCCCCCACCTGCCAAATCTTCCCCG‑GCGCGT‑TTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGTCGGTACAGGTAAGCCCCAGATCGCC‑AAGCCCCGCCATGCCCAT‑AAAGGTGGCAGGGTCGGCAcc < 2:1141504/158‑1 (MQ=255) ccTTCCACCCCCTGACCAATCTTCTCCT‑GCGCGC‑TTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGTCGGTACAGGTAAGCACCAGATCGCC‑AAGCCCCGCCATGCCCAT‑AAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCG‑ACATTTcagc < 1:70659/188‑1 (MQ=255) cTTCCCCCCCCTGACCACTCTTCTCCT‑GCGCGC‑TTTGTACATCCATGCCCGGCCCGAGCATCATGCCAAAACGGCGGTTACGCGACTGTTTGTCGGTACAGGTAAGCACCAGATCGCC‑AAGCCCCGCCATGCCCAT‑AAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCG‑ACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCG‑CACCAAAACCGATACCg < 1:1558310/239‑1 (MQ=255) cTTCCCCCACCTGACCAATCTTCCCCT‑GCGCGT‑TTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGCCGGTACAGGTAAGCACCAGATCGCC‑AAGCCCCGCCATGCCCAT‑AAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCG‑ACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCG‑CACCAAAACCGATACCg < 1:2058266/239‑1 (MQ=255) cccccaccTGACCAATCTTCTCCT‑GCGCGC‑TTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTCCGCGACTGGTTGTCGGTACAGGTAAGCACCAGATCGCC‑AAg < 1:1208155/115‑1 (MQ=255) ccccccTGACAAATTTCCTCCT‑GC‑CGCTTTTGCACCTCCGTCCCCGGCCCGGGCATCATCCCAAAAGGGGGGTTCCGCGACGGGTTGTCGGTACAGGAAAGCCCCAGACCCCC‑AAGCCCCGCCATGCCCAT‑AAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCG‑ACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCG‑CACCAAAACCGATACCGTCGGa < 2:2039411/235‑1 (MQ=255) cccccTGCCCAATCTTCCCCT‑GCGCGC‑TTTGTACTTCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGTTTGTCGGTACAGGTAAGCACCAGATCGCC‑AAGCCCCGCCATGCCCAT‑AAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCG‑ACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCG‑CACCAAAACCGATACCGTCGGAc < 1:1251528/236‑1 (MQ=255) ccTGACCAATCTTCTCCT‑GCGCGC‑TTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGTCGGGACAGGGAAGCACCAAAACGCC‑AAACCCCGCCCCGCCCCT‑AAAAGGGGGAGGGGCGGCACCCCGCGCCGCACCAAAACGCG‑ACACTTTTgcccgccccccg > 2:70659/1‑184 (MQ=255) ccTGACCAATCTTCTCCT‑GCGCGC‑TTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGGTGTCGGGACAGGGAAGCACCAGATCGCC‑AAACCCCCCCACGCCCCT‑AAAAGGGGGAGGGGCGGCCCCCCAcgccccc > 1:1141504/1‑155 (MQ=255) ccTGACCAATCTTCTCCT‑GCGCGC‑TTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACCCGACCGGGTTTCGGTGCAGGGAAACACCAAAAAGCC‑AAACCCCCCCCCGCCCCC‑AAAGGTGGCAGGGGCGGGACCCCCCGCCGCACCCAGACGCC‑GCAATTCACCCAGCCCACCGGGGGCGAGCGCCgac > 2:20264/1‑201 (MQ=255) gACCATCCTCCTCCT‑GCGGGT‑TTTGTACACCCATCCCCTGACCGAGCACCATGCCAAACCGGCGGTTCCGCGACTGGTTGTCGGTACAGGTAAGCACCAGATCGCC‑AAGCCCCGCCATGCCCAT‑AAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCG‑ACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCG‑CACCAAAACCGATACCGTCGGACATcccc < 2:1055794/239‑1 (MQ=255) aCCAATCTTCTCCT‑GCGCGC‑TTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACCCGACTGGTTGTTGGGGCAGGGAAGCACCCGATCGCC‑AAGCCCCGCCCTg > 2:1208155/1‑118 (MQ=255) aCCAATCTTCTCCT‑GCGCGC‑TTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACCCCACTGGGTTTCGGGACAGGGAAGCACCAAAACGCC‑CAGCCCCGCCCCGCCCAT‑AAAAGGGGCAGGGGCGGCCCCCAGCGCCCCACCAACACGCC‑ACACTTTAACCCACCCCCGGGGGATCCGCCCCGTACGCGCACTCG‑CCCCCAAAACCCGACCGTCGGACGAcccc > 2:293968/1‑238 (MQ=255) cT‑GCGCTC‑TTTGTACACCCATGCCCTGACCGAGCATCATGCAAAAACGGCGGTTACGCGACGGGTTGGCGGTAAAGGAAAGCCCCAGACCGCC‑AACCCCCGCCATGCCCAT‑AAAGGTGGCAGGGt < 2:1234756/125‑1 (MQ=255) gcgcgt‑TTTGTACACCCATGCCCTGCCCGAGCATCATGCCAAACCGGCGGTTCCGCGACTGGTTGTCGGTACAGGTAAGCACCAGATCGCC‑AAGCCCCGCCATGCCCAT‑AAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCG‑ACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCG‑CACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATa < 1:920177/239‑1 (MQ=255) cgcgc‑TTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCCCCTGGTTTTCTGTACATGTTAGCACCCAAGAGCC‑CAGACCCGCCCTccccctcaa > 1:65699/1‑106 (MQ=255) tttGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGTCGGTACAGGTAAGCACCAGATCGCC‑AAGCCCCGCCATGCCCAT‑AAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCG‑ACATTTcag < 1:2310934/153‑1 (MQ=255) tGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGTCGGTACAGGTAAGCCCCAGATCGCC‑AAGCCCCGCCATGCCCAT‑AAAg < 1:1564414/105‑1 (MQ=255) tGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGTCGGTACAGGTAAGCACCAGATCGCC‑AAGCCCCGCCATGCCCAT‑AAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCG‑ACATTTcagc < 1:1749905/152‑1 (MQ=255) tGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGTCGGTACAGGTAAGCACCAGATCGCC‑AAGCCCCGCCATGCCCAT‑AAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCG‑ACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTAcgcg < 1:2129244/181‑1 (MQ=255) tGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCCACTGGGTTTCGGGACAGGGAAGCACCAAAACGCC‑AAACCCCCCCCTGCCCAT‑AAAAGGGGCAGGGGCGGCAccccg > 1:1234756/1‑123 (MQ=255) tGTACACCCAGCCCCTGCCCGAGCATCATGCCAAAACGGCGTTTACGCGACTGGTTGTCGGTACAGGTAAGCCCCAGATCCCC‑AAGCCCCGCCATGCCCAT‑AAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCG‑ACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCG‑CACCAAAACCGATACCGTCGGAc < 1:1636052/210‑1 (MQ=255) tACATCCATGCCCTGACCGAGCATCATGCAAAAACGGCGGTTCCGCGACTGGTTGTCGGTACAGGTAAGCACCAGATCGCC‑AAGCCCCGCCAt < 1:1523891/93‑1 (MQ=255) ccagccccTGACCGAGCATCATCCCAAACCGGCGTTTCCGCGACTGTTTGTCGGTACAGGAAAGCCCCAGATCGCC‑AAGCCCCGCCATGCCCAT‑AAAGGTGGCAg < 2:225798/100‑1 (MQ=255) ccATGCCCTGACCGAGCATCATGCCAAACCGGCGGTTACGCGACTGGTTGTCGGTACAGGTAAGCACCAGATCGCC‑AAGCCCCGcc < 1:1150712/86‑1 (MQ=255) ccATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTCCGCGACTGGTTGTCGGTACAGGTAAGCACCAGATCGCC‑AAGCCCCGCCATGCCCAT‑AAAGGTGGCAGGGTCGGCAcc < 1:71044/115‑1 (MQ=255) ccATGCCCGGACCGAGCATCAGGCCAAAACGGCGGTTACGCGACTGGTTGTCGGTACAGGTAAGCCCAAGACCGCC‑AAGCCCCGCCATGCCCAT‑AAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCG‑ACATTTcagccag < 1:1331345/148‑1 (MQ=255) cATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTAAGCGACCGGTTTTCGGGACAAGGAAACACCAAAACGCC‑CAACCCCCCCCCGCCCCT‑AAAAGGGGGAGGGGCGGCACCCACCCCCCCCCCCCAAAGCG‑GCCTTTTAGCCAGCCCCCCGGGGCTCAGCGCCGCACCCGCCATTG‑CCCCACAAACAAAACAGTCGGACATCCCCCCACCCAACGCAATAACACGTTTTTCCCcg > 2:2075368/1‑238 (MQ=255) tGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGGTGTCGGGACAGGGAAGCACCAGAACCCC‑CAGCCCCCCCCCGCCCCT‑AAAAGTGGCCgggg > 2:1564414/1‑104 (MQ=255) tGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACCCCCCACGTTTTCGGTAAAGGGAAGGACCACAACGCCAAAACCCCCCCACTCCCCA‑AAAGG‑GGCAGGGGGGGGACCCCGCGACGCACCCAGAAGCC‑AACATTCACGCAGCCCACCGGGGGGAAGCGCCGGCCGCCCATTCGCCCCCAAAACCGA‑ACCCGCGGGCAACCCCCCCCCCCTGGCAAAA‑‑ACGcttttttcccccgc > 2:1141797/1‑229 (MQ=255) tGCCCTGACCGAGCATCATGCCAAAACGGCGGTTAACCCACTGGTTGTTGGGACAGGGAAGCACCAAAACGCC‑AAACCCCCCCCCGCCCCT‑AAAAGGGGGAGGGGCGGCACCCCCCGCCCCCCCCACACGCG‑ACATTTTAGCCAGccccccg > 2:1749905/1‑148 (MQ=255) tGCCCTGACCGAGCATCATGCCAAAACGGCGGGTACGCGACTGGGTGTGGGGTCAGGTAAACa > 2:759142/1‑63 (MQ=255) cccTGACCGGGCATCATGCAAAAAGGGAGGTTACGCGACGGTTTGTGGGTACGGGTAAGCACCAGATCGCC‑AGGACCCGCCATGCCCAT‑AAAGGTGGCAGGGTCg < 1:90584/105‑1 (MQ=255) cccTGACCGAGCATCATGCCAAAACGGCGGTTAAGCGGCCGGGTGTGGGGAAAGGGAAg > 2:594762/1‑59 (MQ=255) cccTGACCGAGCATCATGCCAAAACGGCGGTTAAGCGACCGGGTTTCGGGACAGGGAAGCAACAAAACGCC‑CAGCCCCCCCCTGCCCCT‑aaaa > 2:1523891/1‑92 (MQ=255) ccTGACCGAGCATCATGCCAAACCGGCGGTTACGCGACTGGTTGTCGGTACAGGTAAGCCCCAGATCGCC‑AAGCCCCGCCATGCCCAT‑AAAGGTGGCAg < 2:1511480/99‑1 (MQ=255) aCCGAGCATCATGCCAAAACGGCGGTTTCGCGACTGGTTGTCGGTACAGGGAAGCACCCGACCGCC‑AAGACCCCCCCTGCCCCT‑AAAGGAGGGCGGGGCGGCAcc > 1:225798/1‑105 (MQ=255) aCCGAGCATCATGCCAAAACGGCGGTTACGCGACTGTTTGTCGGTAAAGTTAAGCACCAGATCGCC‑AAGCCCCGCCATGCCCAT‑AAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCG‑ACATTTCAGCCAGCCCACgg < 1:1414438/145‑1 (MQ=255) aCCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGTCGGTACAGGTAAGCACCAGATCGCC‑AAGCCCCGCCATGCCCAT‑AAAGGTGGCAGGGTCGGCAccc < 1:607072/106‑1 (MQ=255) aCCGAGCATCATGCCAAAACGGCGGTTACGCGACCGGGTTTCGGGACAGGGAAAGACCAAAACGCC‑AAACCCCCCCCTGCCCCT‑AAAAGGGGCAGGGGCGGCACCCCGcgccgcc > 2:71044/1‑114 (MQ=255) catcatGCCAAAACGGCGGTTACGCGGCTGGTTGTTGGGACAGGGAAGCACCCGAACGCC‑CAGCCCCCCCCCGCCCCT‑AAAAGGGGGAGGGGCGGCAcc > 1:1511480/1‑99 (MQ=255) atGCCAAAACGGCGGTTACGCGCCTGGTTGTCGGTACAGGGAAGCACCAAAACGCC‑CAACCCCCCCCTGCCCCT‑AAAAGGGGCCGGGGGGGCACCCCGCCCCCCAc > 2:607072/1‑106 (MQ=255) ggTTACGGGACTGGTTGTCGGTACGGGAAAGCCCCAGTTCGCC‑AAGCCCCGCCATGCCCAT‑AAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCG‑ACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCG‑CACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATA‑‑ACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCgg < 1:82930/235‑1 (MQ=255) gTCGGTACAGGTAAGCACCAGATCGCC‑AAGCCCCGCCATGCCCAT‑AAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCG‑ACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCG‑CACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATA‑‑ACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACGCGGaa > 1:938852/1‑237 (MQ=255) aGGTAAGCACCAGATCGCC‑AAGCCCCGCCATGCCCAT‑AAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCG‑ACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCAtt < 2:538476/121‑1 (MQ=255) aGGTAAGCACCAGATCGCC‑AAGCCCCGCCATGCCCAT‑AAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCG‑ACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCAtt > 1:538476/1‑121 (MQ=255) aGGTAAGCACCAGATCGCC‑AAGCCCCGCCATGCCCAT‑AAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCG‑ACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCG‑CACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATA‑‑ACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACGCGGAAACTTTTGcc > 2:159869/1‑238 (MQ=255) aGGTAAGCACCAGATCGCC‑AAGCCCCGCCATGCCCAT‑AAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCG‑ACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCG‑CACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATA‑‑ACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAAACCGGATTGCTGTAAACGCGGAAACTTTTGcc > 1:2105771/1‑238 (MQ=255) gTAAGCACCAGATCGCC‑AAGCCCCGCCATGCCCAT‑AAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCG‑ACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCG‑CACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATA‑‑ACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACGCGGAAACTTTTGCCGCa > 1:504108/1‑239 (MQ=255) | GCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATA‑CTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCT‑GCGCGC‑TTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGTCGGTACAGGTAAGCACCAGATCGCC‑AAGCCCCGCCATGCCCAT‑AAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCG‑ACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCG‑CACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATA‑‑ACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACGCGGAAACTTTTGCCGCA > NC_000913/3782670‑3783145 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |