| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 989,917 | 0 | A | G | 32.6% | 79.6 / 12.2 | 52 | L147P (CTC→CCC) | pncB | nicotinate phosphoribosyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (12/21); new base G (7/9); total (21/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.57e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GTGCCTGGAACCATTCGTGTGCCTGTGTTCCCATCGGCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGC‑GAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACC‑GGCGGTTAACGCC‑GAGAAGTCGAC‑TAA‑TTTGCTTT‑CCAGCGTGT‑CGA‑GGGCTTGC‑GCAACGTCGGCCT‑GCGGTGAGCGATAGCGATGTACCATTTCACT‑GATAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCA > NC_000913/989681‑990150 | gtgCCTGGAACCATTCGTGTGCCTGTGTTCCCATCGGCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGC‑GAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACC‑GGCGGTTAACGCC‑CAGAAGACGAC‑CAC‑ATTTCTTT‑TCCGCGGGT‑CGT‑gg > 1:878931/1‑239 (MQ=255) ccTGGAACCATTCGTGTGCCTGTGTTCCCATCGGCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGC‑GAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACC‑GGCGGTTAACGCC‑GACAAGTAGAC‑TAA‑TTTTGTTT‑CCAGCGGGT‑CGG‑GGGcg > 1:2180906/1‑238 (MQ=255) ccTGGAACCATTCGTGTGCCTGTGTTCCCATCGGCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGC‑GAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACC‑GGCGGGTAAAGCC‑CGGAAGTCGAC‑TAA‑TTTGCTTT‑TCAGCGTGT‑CGC‑GGGCt > 1:2309155/1‑239 (MQ=255) ttCGTGTGCCTGTGTTCCCATCGGCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGC‑GAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACC‑GGCGGTTAAAGCC‑CGGAAGGCGAC‑AAA‑ATTGTTTT‑TCAACGGGG‑TGAGGGGGTTGC‑GCAAc > 1:2242740/1‑238 (MQ=255) gtgCCTGTGTTCCCATCGGCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGC‑GAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACC‑GGCGGTTAAAGCC‑GAGAAATCGGC‑TAA‑ATTTCTTT‑CCAGCGTGT‑CGG‑GGGGTTTG‑GCAACGCCGGc > 1:628121/1‑238 (MQ=255) cTGTGTTCCCATCGGCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGC‑GAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACC‑GGCGGTTAACGCC‑GAGAAGTCGAC‑TAA‑TTTGCTTT‑CCAGCGTGT‑CGA‑GGGCTTGC‑GCAACGTCGGCCT‑GCg < 2:1677351/239‑1 (MQ=255) cTGTGTTCCCATCGGCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGC‑GAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACC‑GGCGGGTAAACCC‑CAGAAAGCGACAGAA‑TTTCTTTT‑CCA‑CCTGT‑CCG‑GGGCGTGG‑GCAACGtgcggctccg > 2:216208/1‑230 (MQ=255) gtgtTCCCATCGGCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGC‑GAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACC‑GGCGGGTAAACCC‑GGGAAGTTGAC‑TAATTTTGTTTT‑CCACCGTTT‑GGG‑GGGCTTG‑‑GCAACGTCGGccccgggg > 1:95523/1‑233 (MQ=255) ccATCGGCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGC‑GAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACC‑GGCGGTTAACGCC‑GAGAAGTCGAC‑TAA‑TTTGCTTT‑CCAGCGTGT‑CGA‑GGGCTTGC‑GCAACGTCGGCCT‑GCGGTGagcga < 2:1591076/239‑1 (MQ=255) ccATCGGCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGC‑GAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACC‑GGCGGTTAACGCC‑GAGAAGTCGAC‑TAA‑TTTGCTTT‑CCAGCGTGT‑CGA‑GGGCTTGC‑GCAACGTCGGCCT‑GCGGTGagcga < 1:2285890/239‑1 (MQ=255) ccATCGGCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGC‑GAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACC‑GGCGGTTAACGCC‑GAGAAGTCGAC‑TAA‑TTTGCTTT‑CCAGCGTGT‑CGA‑GGGCTTGC‑GCAACGTCGGCCT‑GCGGTGagcga < 2:291396/239‑1 (MQ=255) ggCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGC‑GAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACC‑GGCGGTTAACGCC‑GAGAAGTCGAC‑TAA‑TTTGCTTT‑CCAGCGTGT‑CGA‑GGGCTTGC‑GCAACGTCGGCCT‑GCGGTGagcgatagcg < 1:219817/239‑1 (MQ=255) ggCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGC‑GAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACC‑GGCGGTTAACGCC‑GAGAAGTCGAC‑TAA‑TTTGCTTT‑CCAGCGTGT‑CGA‑GGGCTTGC‑GCAACGTCGGCCT‑GCGGTGagcgatagcg < 1:2289739/239‑1 (MQ=255) aGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGC‑GAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACC‑GGCGGTTAACGCC‑GAGAAGTCGAC‑TAA‑TTTGCTTT‑CCAGCGTGT‑CGA‑GGGCTTGC‑GCAACGTCGGCCT‑GCGGTGAGCGATAGCGATGTACCATTTc < 1:1489705/239‑1 (MQ=255) aGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGC‑GAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACC‑GGCGGTTAAAGCC‑GAGGAGACGAC‑TAA‑TTTTTTTT‑CCAGCGTGG‑CGA‑GGGGTTGC‑GCAACGACGGCCG‑GCGGTGGGGGGTAGGGGCGTAACATTTc > 2:1489705/1‑239 (MQ=255) gCTGGCGCCCAAAACCCAGGATTCCTTTTGCAGACGCTTAACGATGTTTTTTTTTACTTGGG‑AAAAAAAACGGCGACGGGTGCAAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACC‑GGCGGTTACCGCC‑GAGAAGTCGAC‑TAA‑TTGCCTTT‑CCAGCGTGT‑CGG‑GGGCTTGC‑GAAACGTCGGCCG‑GGGGTGGGGGATAGCGATGTCCCATTTCACA‑AATAACCGCCAGCAAAGGaa < 2:2242740/239‑1 (MQ=255) cTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGC‑GAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACC‑GGCGGTTAACGCC‑GAGAAGTCGAC‑TAA‑TTTGCTTT‑CCAGCGTGT‑CGA‑GGGCTTGC‑GCAACGTCGGCCT‑GCGGt < 2:2327584/192‑1 (MQ=255) cTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGC‑GAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACC‑GGCGGTTAAAGCC‑GAGAAGTCGAC‑TAA‑TTTGCTTT‑CCAGCGTGT‑CGA‑GGGCTTGC‑GCAACGTCGGCCT‑GCggg > 1:2327584/1‑191 (MQ=255) ccACAACCCAGGTTTCCTGTTGCAGATGCTTAACTATGGTTTCTTGTACTGCGC‑GAAAAAGACGGCGACGTGTACAAAAACCC‑ATCGGGTGAAGGCGAGAAATCTCAAGCCC‑GGCGGTTACCGCC‑GAGAAGTCGCT‑TAA‑TTTGCTTT‑CCTGCGTGT‑GGG‑GGGCTTGC‑TCAGCGTCGGCGT‑GGGGGGAGGAATAGCAATTTACTTTTTCACT‑GAGACCCGCCAGCAAAGGAACTTCCCag < 2:1424804/239‑1 (MQ=255) cTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGC‑GAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACC‑GGCGGTTAAAGCC‑GAGAAAAAGAC‑TAA‑TTTGCTTT‑CCAGCGGGT‑CGA‑GGGGTTGC‑GCCAAGTCGTACT‑GCGGGGCGCGCTAGCGATGTACCATTTCCCC‑GCTAACCTCCAGCCAAAGAAACTCCCCCAGCATGACATccaca > 2:1944516/1‑234 (MQ=255) cTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGC‑GAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACC‑GGCGGTTAAAGCC‑CAGAAGGCGAA‑TAA‑ATTTCTTT‑TCCGCGGGT‑CGA‑GGGCTTGC‑GCAACAGCGGCCC‑GCGGGGAGGGATAACGATGGACCCATTTAAT‑GATAACCGCCAGCCAAGGAAATTCCCAAAGGATTGCTTCaacc > 2:2050756/1‑235 (MQ=255) gCAGCCGTTGAACGAGGGTTTCTTTTCCTCCGG‑GAAAAAAACGGGGCCGGGTTCCAAAAGCC‑ATAAGAGGGAAGCGCGAAATAACAAGACC‑GGCGGTTACCGCC‑GAGAGGTCGCC‑TAT‑TTTGCTTG‑CCGGCGTGT‑CGA‑GGGCTTGC‑GCAACGTCGCCTG‑GGGGGGAGCAATAGCAATGTCCCTTTTCATT‑GAAAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACggg < 2:362065/239‑1 (MQ=255) gCTTAACGATGGTTTCTTGTACTTCGC‑GAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACC‑GGCGGTTAACGCC‑GAGAAGTCGAC‑TAA‑TTTGCTTT‑CCAGCGTGT‑CGA‑GGGCTTGC‑GCAACGTCGGCCT‑GCGGTg < 1:2127423/159‑1 (MQ=255) cttaCGATTGTTTTCTGTACTTGGCGGAAAAAACCGGGGAGGGGTCCAAAAACCA‑ATCAAAGGGAAGCGCAAAATACAAAGCCG‑GGGGGTAAACGCG‑GAAAAGTGGTT‑TAA‑TTTCTTTC‑CCGGCGTGT‑GGG‑GGGCTTGC‑GAAACGCCGGCCG‑GCGGTGGGCGATAGCGATGTACCATTCCACT‑GAAAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTa < 2:95523/236‑1 (MQ=255) ggTTTCTTGTACTTCGC‑GAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACC‑GGCGGTTAACGCC‑CAGAAGTCGAC‑TAA‑TTTTCTTT‑TCAGCGTGT‑CGG‑GGGGTTGC‑GCAACGGCGGCCC‑GCGGGGggggatagcg > 2:2127423/1‑159 (MQ=255) tttCTTGTACTTCGC‑GAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACC‑GGCGGTTAACGCC‑GAGAAGTCGAC‑TAA‑TTTGCTTT‑CCCGCGTGT‑CGA‑GGGCTTgc‑g > 1:1307849/1‑129 (MQ=255) tttCTTGTACTTCGC‑GAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACC‑GGCGGTTAACGCC‑GAGAAGTCGAC‑TAA‑TTTGCTTT‑CCAGCGTGT‑CGA‑GGGCTTgc‑g < 2:1307849/129‑1 (MQ=255) tCTTGTACTTCGC‑GAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACC‑GGCGGTTAACGCC‑GAGAAGTCGAC‑TAA‑TTTGCTTT‑CCAGCGTGT‑CGA‑GGGCTTGC‑GCAACGTCGGCCT‑GCGGTGagcgatagcg < 1:1442896/155‑1 (MQ=255) tCTGGTACTTGGG‑AAGAAAACCGGCGGCGGTGGCAAAAACCC‑ATAAAAGGAAAGCGCAAAATATAAAGCCC‑GGCGGTTACCGCC‑GAGAAGGCGAC‑TAT‑TTTGCTTC‑CCGGGGTGT‑CGA‑GGGCTTGC‑GAAACGTCGGCCG‑GGGGGGAGCGATAGGGATGTCCTATTTCACG‑GAAAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAg < 2:878931/239‑1 (MQ=255) tgaggaaaaaaaCGGGGGAGGGGGCCAAAAACCAATAGGTTGAAAGGGCGAAATA‑CAAGGCCGGGAGGTTACCGCC‑GAGAGGT‑GGC‑TTA‑TTTGTTTTCCCGGGGTGT‑GGG‑GGGCTTGC‑GCACCGTCGGCCG‑GGGGGGAGGGATAGGGATGACCCTTTCCACT‑GAAAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCAt < 2:1236047/232‑1 (MQ=255) cgc‑gAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACC‑GGCGGTTAACGCC‑GAGAAGAAGAC‑AAA‑TTTGCTTT‑TCAGCGGGG‑CGG‑GGGGTTGC‑GCAACGGCGGCCC‑GCGGTGAGCGATAGGGATGTACCAtt > 2:1442896/1‑155 (MQ=255) cgc‑gAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACC‑GGCGGTTAAAGCC‑GAGAAGACGAC‑TAA‑TTTGTTTT‑TCAGCGTGG‑CGA‑GGGCTTGC‑GCAACGTCGGCCT‑GCGGGGAGCGAGAGCGCTGGACCAATTCACT‑GATAAAAGCCAGAAAAAGAAAATCCCACAGGATGACTTCACTCCACGGGGCGCTCACACGAAAAACAAGCTTGcaaata > 2:690710/1‑234 (MQ=255) gcaaaaaCCC‑ATCAGATGGAAGGGCAACATCTAAAGCGC‑GGCGTTAACCGCA‑GGAAATCCGAT‑TAT‑TTTGTTTT‑CCGGCGTGT‑CGA‑GGGTTGCC‑GCATCGCCGGCCT‑GCGTTGGGGGAAGGGGTTGTACTTTTTCACA‑GATACCCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGtt < 2:2180906/236‑1 (MQ=255) aTCAGATGGAAGCGCGACATATCAAGACC‑GGCGGTTAACGCC‑GAGAAGTCGAC‑TAA‑TTTGCTTT‑CCAGCGTGT‑CGA‑GGGCTTGC‑GCAACGTCGGCCT‑GCg < 1:2177273/100‑1 (MQ=255) tCAGATGGAAGCGCGACATATCAAGACC‑GGCGGTTAAACCC‑GAGAAGTCGAC‑CAA‑TTTTCTTT‑TCAGCCGGT‑CGG‑GGGCTTGC‑GCCACGTCGGCCT‑GCGGTGAGCGATAGCGATGTACCATTTCACT‑GTTAACCGCCAGCCAAAGAACATCCCAAAGGATGACTTCACGCCCCGGGCCGCCTAAAAGAAAATCCAGCTTGCCATTATCGTTGGACACCGGGGCTTGTTCCTGGTTaaaa > 2:2053255/1‑238 (MQ=255) aGCGCGACATATCAAGACC‑GGCGGTTAACGCC‑GAGAAGTCGAC‑TAA‑TTTGCTTT‑TCCGCGTGG‑CGA‑GGGCTTGC‑GCAACGCCGGCCC‑GCGGGGagcgata > 2:2177273/1‑100 (MQ=255) aGCGCGACATATCAAGACC‑GGCGGTTAACGCC‑GAGAAGTCGAC‑TAA‑TTTGCTTT‑CCAGCGTGT‑CGA‑GGGCTTGC‑GCAACg < 1:1399769/80‑1 (MQ=255) gACATATCAAGACC‑GGCGGTTAACGCC‑GAGAAGTCGAC‑TAA‑TTTGCTTT‑CCAGCGTGT‑CGG‑GGGCTTGC‑GCAACGTCGGCCT‑GCGGTGAGCGATAGCGATGTCCCATTTCACT‑GATAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTaa < 1:216208/239‑1 (MQ=255) gACATAACAAGCCG‑GGCGGTGACCGCC‑GAAATGTCGAC‑TAA‑TTTGCTTT‑CAAGTGGGT‑CGG‑GGGCTTGC‑GAAACGTCGGCCT‑GCGGTGAGCGATAGCGATGTCCCATTTCACT‑GATAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTaa < 2:730024/239‑1 (MQ=255) aaatacaaaGCCC‑GGGGGTTAACGCC‑GAAAAGTCGAT‑TAT‑TTTGTTTT‑CC‑GGGTGTGCGG‑GGGTTTGC‑CAAACGCGGCCCT‑GGGGGGAGCATTGGCGATGT‑CCCTTTCCCTGGAAACCCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTaa < 2:2309155/231‑1 (MQ=255) atCAAGACC‑GGCGGTTAACGCC‑GAGAAGTCGAC‑TAA‑TTTGCTTT‑CCAGCGTGT‑CGA‑GGGc < 1:1119444/60‑1 (MQ=255) atCAAGACC‑GGCGGTTAACGCC‑GAGAAGTCGAC‑TAA‑TTTGCTTT‑CCAGCGTGT‑CGA‑GGGCTTGC‑GCAACGTCGGCCT‑GCGGTGAGCGATAGCGATg < 1:110835/96‑1 (MQ=255) tCAAGACC‑GGCGGTTAACGCC‑GAGAAGTCGAC‑TAA‑TTTGCTTT‑CCAGCGTGT‑CGA‑GGGCTTGC‑GCAACGTCGGCCT‑GCGGTGAGCGATAGCGATGTACCAtt < 1:340889/102‑1 (MQ=255) ggcggTTCACGCCGGAGATG‑CCAC‑TAA‑TGTGTTTA‑CCGGGGGGT‑CGT‑GGG‑TTGCAGCACGGGCGGCCG‑GGGGGCAGCGATGGGGATGTCCCTTTTCCCT‑AATACCCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGt < 2:91712/239‑1 (MQ=255) aaaCGCC‑GGAAAGTCGTA‑TAT‑TTTGCTTG‑CCAGGGTTT‑GGG‑GGGTTTGC‑GCAACG‑CGGTCTGGGGGTGAGCGATCGCAATGTCCCATTTCACA‑AATACCCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCt < 2:2168117/238‑1 (MQ=255) cGAC‑TAA‑TTTGCTTT‑CCAGCGTGT‑CGA‑GGGCTTGC‑GCAACGTCGGCCT‑GCGGTGAGCGATAGCGATGTACCATTTCACT‑GATAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAggcagg > 2:2029067/1‑239 (MQ=255) c‑TAA‑TTTGCTTT‑CCAGCGTGT‑CGA‑GGGCTTGC‑GCAACGTCGGCCT‑GCGGTGagcgatagcg > 2:1637435/1‑61 (MQ=255) c‑TAA‑TTTGCTTT‑CCAGCGTGT‑CGA‑GGGCTTGC‑GCAACGTCGGCCT‑GCGGTGagcgatagcg < 1:1637435/61‑1 (MQ=255) tGCTTT‑CCAGCGTGT‑CGA‑GGGCTTGC‑GCAACGTCGGCCT‑GCGGTGAGCGATAGCGATGTACCATTTCACT‑GATAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAg > 2:828855/1‑238 (MQ=255) tt‑CCAGCGTGT‑CGA‑GGGCTTGC‑GCAACGTCGGCCT‑GCGGTGAGCGATAGCGATGTACCATTTCACT‑GATAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGcc > 1:2018000/1‑236 (MQ=255) gt‑CGG‑GGGCTGGC‑ACAACTGCGGCCT‑GGGGGGGCGGATGGCGATGTCCCTTTCCCGT‑GATAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATtca < 2:628121/238‑1 (MQ=255) t‑CGA‑GGGCTTGC‑GCAACGCCGGCCT‑GCGGTGGGCGATAGCGATGTCCCTTTTCACT‑GATAACCGCCAGCAAAGGAACTTCCCAGAGGa < 2:892623/88‑1 (MQ=255) | GTGCCTGGAACCATTCGTGTGCCTGTGTTCCCATCGGCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGC‑GAGAAAAACGGCGACGGGTGCCAAAATCC‑ATCAGATGGAAGCGCGACATATCAAGACC‑GGCGGTTAACGCC‑GAGAAGTCGAC‑TAA‑TTTGCTTT‑CCAGCGTGT‑CGA‑GGGCTTGC‑GCAACGTCGGCCT‑GCGGTGAGCGATAGCGATGTACCATTTCACT‑GATAACCGCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCA > NC_000913/989681‑990150 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |