Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	753,125	0	T	A	31.8%	126.7 / 33.2	63	intergenic (‑330/+60)	ybgD/gltA	putative fimbrial‑like adhesin protein/citrate synthase
Reads supporting (aligned to +/- strand):  ref base T (40/3);  new base A (0/20);  total (40/23)
Fisher's exact test for biased strand distribution p-value = 1.31e-13
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

ATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTATAGATAGACGTCATTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAG‑CTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGT‑CGCGTTTTTCATATCCTGTATACAGCTGACG‑C‑GGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTGGGCGATCCAGCCAACGGTACGTGCCATTGCGAAAATGACGGTGAACATGGAAGACGGAATACCCATCGCTTTCAGGA  >  NC_000913/752924‑753363                                                                                                                                                                                                              |                                                                                                                                                                                                                                                   aTCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGAATAGATAGACGTCATTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAG‑CTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTAAAata                                                                                                                                                                                                              >  1:897259/1‑239 (MQ=255)                       aaTAAAATATAGGGGGGTATAGATAGACGTCATTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAG‑CTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAAACAACCa                                                                                                                                                                                        >  1:1500755/1‑239 (MQ=255)                                      ggTATAGATAGTCGTATTTTTCATAGGGTTATAAATTCGACTACATTGAATTTTTATATTAAAATTTTTGTGTTGTTTA‑AAATTGAGTTTTTTTTTTTTTTTTTAAATATTTATATAGGTTTTTTATGGTATTTTATTTTTACAATTTTTGGTTT‑TT‑AGA‑AATAAAAAAATCAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGatat                                                                                                                                                                          <  2:823387/238‑1 (MQ=255)                                        tataGATAGACGTCATTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAG‑CTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAAATTAGCAATCAACCATTAACGCTTGATATc                                                                                                                                                                         >  1:823387/1‑237 (MQ=255)                                                 aCGTCATTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAG‑CTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTaaa                                                                                                                                                                                                                 >  1:579126/1‑188 (MQ=255)                                                 aCGTCATTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAG‑CTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTTAAATATTTACAAATTAACAATCAACCAATAACACTTGCAATCGCTTTTtaaa                                                                                                                                                               >  2:1478483/1‑237 (MQ=255)                                                  cGTCATTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAG‑CTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTTAAATTTTTTCAACTTAGCAATCAACCCTTAACGCTTGATATCGCTTTTAAAGT‑c                                                                                                                                                            >  1:617757/1‑239 (MQ=255)                                                      aTTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAG‑CTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCa                                                                                                                                                                                                >  1:47574/1‑200 (MQ=255)                                                                    ataAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAG‑CTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTAAAAATTTTTCAACTTTATAATCAACCATTAACGCTTTAATTTCCTTTTTAAGTCCGGGtttttattat                                                                                                                                               >  1:740889/1‑230 (MQ=255)                                                                            gACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAG‑CTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGGTTAAATATTTTCAACTTAGCAATCAAACCTTAACGCTTGATATTGCTTTTAAAGT‑CGCGTTTTTTATATCCTGTATACa                                                                                                                                     >  1:784116/1‑236 (MQ=255)                                                                                                              ttGCTGATAATTTGAG‑CTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGT‑CGCGTTTTTCATATCCTGTATAAAGCTGACC‑C‑GGACGGGCAATCTTCATAACGTCCCtgt                                                                                               >  1:1302279/1‑238 (MQ=255)                                                                                                                 cagATATTTTAAG‑TTGTTCTATTTTTTTAAAATATTAATATAGGTTTGTTAATGAATTTTTTTTTTAAAATTTTTTGTGT‑TT‑GGG‑CATAAAAAAACCAAC‑CCGCCATATGAACGGCGGGTTaaa                                                                                                                                                                                                                 <  1:809908/122‑1 (MQ=255)                                                                                                                 cTGATAATTTGAG‑CTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCACTTTTAAAGT‑CGCGGTTTTCATATCCTGTATACAGCTGACG‑C‑GGACGGGCAATCTTCATACCGTCACTTTGCAt                                                                                           >  1:1125999/1‑239 (MQ=255)                                                                                                                       ttttGAG‑GTGTTCTATTTTTTTTAAATATTTAAAAAGGTCTTTAAATGGTTTTTTTTTTTACATTTTTTGGTTT‑TG‑AGG‑CAAAAAAAAATCAAC‑CCGCCATATGAACGGCGGGTTaaa                                                                                                                                                                                                                 <  1:377789/117‑1 (MQ=255)                                                                                                                           gAG‑CTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTTAAATATTTTCaa                                                                                                                                                                                                       >  2:809908/1‑124 (MQ=255)                                                                                                                           gAG‑CTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAAATTAACAATCAACCATTAACGCTTGATTTTGCTTTTAAAGT‑CACGTTTTTCATATCTCGTATACACTTGACC‑CGGGACGGCAAATCTTCTTACC‑TTACTTTGCCTTTTGCTTCac                                                                                 >  2:376594/1‑238 (MQ=255)                                                                                                                                ttttttttttttttaAAATTTTTATATAGTTTTGTTAAGGGTTTTTTTTTTTAAATTTTTTTTTTT‑TT‑AGG‑AATAAAAAAATCAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGT‑CGCGTTTTTCATATCCTGTATACAGCTGACG‑C‑GGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTggg                                                                             <  1:1478483/229‑1 (MQ=255)                                                                                                                                  ttCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGGTTAAATATTTACaa                                                                                                                                                                                                       >  2:377789/1‑118 (MQ=255)                                                                                                                                       tttttttaAAATATTTATATAGTTTTTTTAATGTTTTTTTTTTTTACAATTTTTTGTTT‑TT‑AGG‑AATATAAAAAGCAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGT‑CGCGTTTTTCATATCCTGTATACAGCTGACG‑C‑GGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTGGGCGATCCa                                                                      <  1:43323/236‑1 (MQ=255)                                                                                                                                            tttAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGT‑CGCGTTTTTCATATCCTGtata                                                                                                                                       >  1:1720557/1‑171 (MQ=255)                                                                                                                                            tttAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGGTaaaa                                                                                                                                                                                                                >  2:1160599/1‑99 (MQ=255)                                                                                                                                                   ttttatatgGGTCTGTTAATGGTTTTTTTTTTTAAATTTTTTTGTGT‑TT‑AGG‑AATAAAAAAATCACC‑CCGCCATATGAACGGCGGGTTAAAATATTTa                                                                                                                                                                                                          <  1:1745390/95‑1 (MQ=255)                                                                                                                                                   ttttatataGGTTTTTTAGTGGATTTTTTTTTAACTTTTTTTTTTTT‑TG‑AGG‑AATAAAAAAATAAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGT‑CGCGTTTTTCat                                                                                                                                                 <  1:1539810/151‑1 (MQ=255)                                                                                                                                                   ttttatataGGTTTGTTAATGGTTTTTTTTTTTAAATTTTTTTTTGT‑TT‑AGG‑AATAAAAAAACCAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGT‑CGCGTTTTTCATATCCTGTATACAGCTGACG‑C‑GGAc                                                                                                                       <  1:1012886/175‑1 (MQ=255)                                                                                                                                                    tttttataGGTCTGTAAATGGTTTTTATTTTTACATTTTTTTGTGT‑TT‑AGG‑CATAAAAAAATCACC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTa                                                                                                                                                                                     <  1:1312138/114‑1 (MQ=255)                                                                                                                                                      tatataGTTTTTTAAATGGATTTTTTTTTTAAATTTTTTTGT‑T‑TT‑AGGAAATAAAAAAACCACC‑CCGCCATATGAACGGCGGGTTAAAATATTTa                                                                                                                                                                                                          <  2:503428/95‑1 (MQ=255)                                                                                                                                                      tatataGGTTTTTAAATGTATTTTTTTTTAAAATTTTTTTTTGT‑TA‑AGA‑AAAAAAAAAACCACC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGT‑CGCGTTTTTCATATCCTGTATACAGCTGACG‑C‑GGACGGGc                                                                                                                   <  2:1359357/179‑1 (MQ=255)                                                                                                                                                      tataaaGTTTTGTTAATGGTTTTTTTTTTTATATTTTTTTGTTT‑TT‑AGA‑CATATAAAAACCACC‑CCGCCATATGAACGGCGGGTTAAAATATTTTCAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGT‑CGCGTTTTTCat                                                                                                                                                 <  1:1591376/151‑1 (MQ=255)                                                                                                                                                        tataGGTTTTTTAATGGATTTTTTTTTTAAATTTTTTTTTTT‑TT‑AGC‑AAAAAAAAAACCACC‑CCGCCATATGAACGGCGGGTTaaa                                                                                                                                                                                                                 <  2:666901/86‑1 (MQ=255)                                                                                                                                                             ttCTGTTAATGTTTTTTTTTTTTACATTTTTTTGTGT‑TT‑AGG‑AATAAAAAAATCAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGT‑CGCGTTTTTCATATCCTGTATACAGCTGACG‑C‑GGACGGGCAATCTTCATACCGTCACTGTGCa                                                                                            <  1:1156613/194‑1 (MQ=255)                                                                                                                                                             gTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAACATAGCa                                                                                                                                                                                                >  2:1745390/1‑98 (MQ=255)                                                                                                                                                             gTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAAATTATCAATCAACCATTAAAGCTTGATATCGCTTTTTAAAT‑CGCGTTTTTTATATCCTGTATACAGCTGACC‑C‑GGACGGGGAATCtt                                                                                                             >  2:1012886/1‑178 (MQ=255)                                                                                                                                                             gTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGGTAAAATATTTTAAACTTATCAATCAACCATTAAACCTTGATATCGCTTTTTAAAT‑CGCGTTTTTTATATCCTGATTACACATGTAC‑C‑GGACGGGCAAACTTCTTCCCGTCACTTTTCATTTCGGCCCCGAGTGCGATACACCCACAGGTACGCGCCAtttgg                                                >  2:1252060/1‑236 (MQ=255)                                                                                                                                                             gTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGGTAAAATATTTACAAATTTGCAATCAACCATTAAACCTTGATATCCCTTTTAAAAT‑CGCGTTTTTCATATCCTGttta                                                                                                                                       >  2:1539810/1‑154 (MQ=255)                                                                                                                                                              tCTGTTAATGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTACCACTTTAAAAACAACCACTAACGCTTGgta                                                                                                                                                                           >  2:1312138/1‑118 (MQ=255)                                                                                                                                                                tgatAATGGATTTTTTTTTTAAAATTTTGTGTGT‑TT‑AGG‑CATAAAAAAACAAGC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGT‑CGCGTTTTTCATATCCTGTATACAGCTGACG‑C‑GGACGGGCAATCTTCATACCGTCACTGTGCATTTCg                                                                                       <  2:1594733/194‑1 (MQ=255)                                                                                                                                                                tGTTCATGGATTTTATTTTTACAATTTTTTGCGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTAAAATCTTTACAACTTAGCAATCAACCACTAAAACTTTGTATTGCTTTTAAAGT‑TCCGCTTTTTATATACTGTATAAACATGACGAC‑GCTGGGGCACATTTC‑TACCGACACATTGCACATCGCGCCCGGGGGAGATTCACCCAACTGTGCGTGCCAttcagaca                                             >  2:1429014/1‑233 (MQ=255)                                                                                                                                                                tGTTAATGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTATAATATTTATAACTTAGAAAACAAACATTAAAGCTTGATATTGCTTTTAAAAA‑CGCGATTTTCATATCCAGtata                                                                                                                                       >  2:1591376/1‑151 (MQ=255)                                                                                                                                                                tGTTAATGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCa                                                                                                                                                                                                >  1:503428/1‑95 (MQ=255)                                                                                                                                                                tGTTAATGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGT‑CGCGTTTTTCATATCCTGTATACAGCTGACG‑C‑GGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTGGGCGATCCAGCCAACGGTACGTGCCATTGCGaaa                                             >  1:144799/1‑239 (MQ=255)                                                                                                                                                                tGTTAATGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCCCTTTTAAAGT‑CGCGTTTTTCATATCCTGTATACAGCTGACG‑C‑GGACGGGCAATCTTCATa                                                                                                         >  1:1359357/1‑179 (MQ=255)                                                                                                                                                                  ttAATGGTTTTTATTTTTACAATTTTTTGTTT‑TT‑AGG‑AAAAAAAAAACCAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGT‑CGCGTTTTTCATATCCTGTATACAGCTGACG‑C‑GGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTGGGCGAt                                                                         <  1:1400581/209‑1 (MQ=255)                                                                                                                                                                  ttAATGGTTTTTATTTTTAAAATTTTTTGTTT‑TT‑AGG‑AATAAAAAAAACACC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGT‑CGCGTTTTTCATATCCTGTATACAGCTGACG‑C‑GGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTggg                                                                             <  1:677287/205‑1 (MQ=255)                                                                                                                                                                  ttAATGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTTAAATATTTTCAACTTAGCAATCAACCATTAACGCTTGCCATCGCTTTTTAAAT‑CTCCTTTTTCTTCTCCCGTATACACCTGCCC‑C‑CGCTGCGCAACCTTCCTACCCCCCCTCTGCCTTTCTCTCCAACGCGCGCTCCAGCCACCCGCACCTGCCACTCCGaaca                                            >  2:763939/1‑236 (MQ=255)                                                                                                                                                                  ttAATGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTTCAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGT‑CGCGTTTTTCATATCCTGTATACAGCTGACG‑C‑GGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTGGGCGATCCAGCCAACGGTACGTGCCATTGCGCAAAt                                           >  1:1815267/1‑239 (MQ=255)                                                                                                                                                                  ttAATGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTACaa                                                                                                                                                                                                       >  1:2012878/1‑86 (MQ=255)                                                                                                                                                                  ttAATGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTACaa                                                                                                                                                                                                       >  1:666901/1‑86 (MQ=255)                                                                                                                                                                  ttAATGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGGTAAAATATTTACAACTTAGCAATCAACCCTTAACGCTTGATATCGCTTTTAAAGT‑CGCGTTTTTCatat                                                                                                                                               >  1:1110904/1‑141 (MQ=255)                                                                                                                                                                     aTGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTATAATATTTTCAACTTAACAAACAACCATTAAAGCTTGATATTGCTTTTAAAAT‑TGCGTTTTTTATATCCTGTATACAGCGGAAG‑C‑GGAGGGGCAAACTTCATACCGCTCCTGTGGCTTTCGCTCCCGTGGGGGAACCAGCCAACAGTAACTGCCATTTCGTGAATGAc                                        >  2:1267162/1‑239 (MQ=255)                                                                                                                                                                       gtatttttttttTTAAATTTTTTGTGTATT‑ATG‑‑AAAAAAAAATAAACACCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGT‑CGCGTTTTTCATATCCTGTATACAGCTGACG‑C‑GGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTGGGCGATCCAGCCAACGGTACGTGCCATTGCGAAAATGACg                                       <  2:1125999/237‑1 (MQ=255)                                                                                                                                                                       ggATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAAATTAGAAATAAACCATTAACGCTTGATATCGCTTTTAAAGT‑CGCGTTTTTTATATCCTTTATAAAGCCGACG‑C‑GGTCGGGGAATCTTCATACCGTCACTCTGCATTTCGCTccc                                                                                  >  2:1156613/1‑194 (MQ=255)                                                                                                                                                                          ttttattttTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGGTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTTAAGT‑CGCGTTTTTCATATCCTGTTTACAACTGAAG‑C‑GGACGGGCAATCTTCATACAGTCACTGTGCATTTCGCTCCAGTggg                                                                             >  1:1594733/1‑197 (MQ=255)                                                                                                                                                                            ttttttttAAATTTTTTTTTTT‑TT‑AGA‑AATAAAAAAACCAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGT‑CGCGTTTTTCATATCCTGTATACAGCTGACG‑C‑GGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTGGGCGATCCAGCCAACGGTACGTGCCATTGCGAAAATGACGGTGAAc                                 <  1:403242/236‑1 (MQ=255)                                                                                                                                                                            ttattttTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTTAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAAT‑CGCGTTTTTCATATCCTGTATACAGCTGACG‑C‑GGACGGGCAAACTTCATACCGTCACTGTGCATTTCGCTCCAGTGGGGGATCCAGCCAAAGGGACGTGCCCTTGCGAAAATGACGGGGAAc                                 >  2:403242/1‑239 (MQ=255)                                                                                                                                                                            ttattttTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTTAAATATTTACAACTTAGCAAACAACCATTAACGCTTGATATTGCTTTTAAAGT‑CGCGTTTTTTATATCCTGTATACAGCTGACG‑C‑GGACGGGCAATCTTCATACCTTCACTGTGGATTTTTCTCCCATGGGGGATccctcc                                                                   >  2:677287/1‑201 (MQ=255)                                                                                                                                                                            ttattttTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTAAAAAATTTa                                                                                                                                                                                                          >  1:55938/1‑73 (MQ=255)                                                                                                                                                                                  ttACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGTTTtaaa                                                                                                                                                                                                                >  2:1944706/1‑61 (MQ=255)                                                                                                                                                                                  ttACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTa                                                                                                                                                                                                          >  1:968894/1‑67 (MQ=255)                                                                                                                                                                                  ttAAAATTTTTTTTTT‑TTAAGA‑CAAAAAAAAACCAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGT‑CGCGTTTTTCat                                                                                                                                                 <  2:853565/124‑1 (MQ=255)                                                                                                                                                                                           tttGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTTCAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGT‑AGCGTTTTTCATATCCTGtatt                                                                                                                                       >  1:853565/1‑123 (MQ=255)                                                                                                                                                                                               ttt‑tt‑GGG‑TATATAAAAACCCAC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGT‑CGCGTTTTTCATATCCTGTATACAGCTGACG‑C‑GGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTGGGCGATCCAGCCAACGGTACGTGCCATTGCGAAAATGACGGTGAACATGGAAGACGGAATACCCa              <  1:2092469/237‑1 (MQ=255)                                                                                                                                                                                               tgt‑TT‑AGT‑AAAAAAAAAACCACC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGT‑CGCGTTTTTCat                                                                                                                                                 <  2:213578/110‑1 (MQ=255)                                                                                                                                                                                                    ttaagacATAAAAAAACCACC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGT‑CGCGTTTTTCATATCCTGTATACAGCTGACG‑C‑GGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTGGGCGATCCAGCCAACGGTACGTGCCATTGCGAAAATGACGGt                                     <  2:1929234/208‑1 (MQ=255)                                                                                                                                                                                                            tataAAAATCAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGT‑CGCGTTTTTCATATCCTGtata                                                                                                                                       >  1:213578/1‑110 (MQ=255)                                                                                                                                                                                                              taAAAATCAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGT‑CGCGTTTTTCATATCCTGTATACAGCTGACG‑C‑GGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTGGGCGATCCAGCCAACGGTACGTGCCATTGCGAAAATGACGGTGAACATGGAAGACGGAATACCCATCGCTTTCAGga  <  1:1267162/239‑1 (MQ=255)                                                                                                                                                                                                              taAAAATCAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGT‑CGCGTTTTTCATATCCTGTATACAGCTGACG‑C‑GGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTGGGCGATCCAACCAACGGTACGTGCCATTGCGAAAATGACGGGGAACATGGaa                           >  1:1929234/1‑214 (MQ=255)                                                                                                                                                                                                              |                                                                                                                                                                                                                                                   ATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTATAGATAGACGTCATTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAG‑CTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGT‑TT‑AGG‑CATATAAAAATCAAC‑CCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGT‑CGCGTTTTTCATATCCTGTATACAGCTGACG‑C‑GGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTGGGCGATCCAGCCAACGGTACGTGCCATTGCGAAAATGACGGTGAACATGGAAGACGGAATACCCATCGCTTTCAGGA  >  NC_000913/752924‑753363

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑