| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 954,388 | 0 | C | T | 25.0% | 79.3 / 12.2 | 57 | A27T (GCA→ACA) | focA | formate channel |
| Reads supporting (aligned to +/- strand): ref base C (36/6); new base T (1/13); total (38/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.75e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.37e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ATGCGCCCACTCGCCTTAGCAACAACAATCAACACGGTGGAAGTAAAGAGATCGGCTCCGCAGACAACACAAAGAATCAGCCCCAGAG‑AGAAGCAAATGCCGCCAACCAGTTTTGCCATGCCGAAGGGCATTGTGCCTGTGCCAGTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAAACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGGA‑TGTTT‑CGTTGCTTTATAGACACCCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATGAGAAATTGATATAGATCATATCTCGCCTGGCTTATAGGCCCGTAACTCGCATGGTTTTTATGCAAATACGGAGTAAATATTTGA > NC_000913/954153‑954605 | aTGCGCCCACTCGCCTTAGCAACAACAATCAACACGGTGGAAGTAAAGAGATCGGCTCCGCAGACAACACAAAGAATCAGCCCCAGAG‑AGAAGCAAATGCCGCCAACCAGTTTTGCCATGCCGAAGGGCATTGTGCCTGTGCCAGTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAAACACCGGCGGGAATCGCCAGATAGAAAGTCTTAAGCGGA‑TGTTT‑CGTTGCttt > 1:1754521/1‑239 (MQ=255) tGCGCCCACTCGCCTTAGCAACAACAATCAACACGGTGGAAGTAAAGAGATCGGCTCCGCAGACAACACAAAGAATCAGCCCCAGAG‑AGAAGCAAATGCCGCCAACCAGTTTTGCCATGCCGAAGGGCATTGTGCCTGTGCCAGTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAAACACCGGCGGTAATAGCCAGATAGAAAGTCTTAAGCGGA‑AGTTT‑TGTTGCTTta > 1:1969021/1‑239 (MQ=255) tGCGCCCACTCGCCTTAGCAACAACAATCAACACGGTGGAAGTAAAGAGATCGGCTCCGCAGACAACACAAAGAATCAGCCCCAGAG‑AGAAGCAAATGCCGCCAACCAGTTTTGCCATGCCGAAGGGCATTGTGCCTGTGCCAGTGGTTGCTGAGATATAGAAGACGAATGCGATTGAGATGAAAACACCGGCGGTAATCGCCCGATAGAAAAACTTAAACGGA‑TGTTT‑CGTAGCTTta > 1:193864/1‑239 (MQ=255) gcccccACTCGACTTAGCAACAACAACCAACACGGTGGAAGTAAAGAGATCGGCTCCGCAGACAACACAAAGAATCAGCCCCAGAG‑AGAAGCAAATGCCGCCAACCAGTTTTGCCATGCCGAAGGGCATTGTGCCTGTGCCAGTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAAACACCGGCGGTAATCGCCAGTTAGAAAGTCTTAAGCGGA‑TGTGT‑CGTTTCTTtat < 2:946491/236‑1 (MQ=255) aCTCGCCTTAGCAACAACAATCAACACGGTGGAAGTAAAGAGATCGGCTCCGCAGACAACACAAAGAATCAGCCCCAGAG‑AGAAGCAAATGCCGCCAACCAGTTTTGCCATGCCGAAGGGCATTGTGCCTGTGCCAGTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAAACACCGGCGGTAATCGCCAGAGAGCAAGTCTTAAGCGGG‑TGTGT‑CCGTGCTTTATAGaca > 2:615952/1‑238 (MQ=255) acGGTGGAAGTAAAGAGATCGGCTCCGCAGACAACACAAAGAATCAGCCCCAGAG‑AGAAGCAAATGCCGCCAACCAGTTTTGCCATGCCGAAGGGCATTGTGCCTGTGCCAGTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAAACACCGGCGGTAATCGCCAGATAGAAAAACTTAAGCGGA‑TGTTT‑CGTTGCTTTATAGACACCCCCCCCTTCGGTCC‑CTTTGGCCAt > 1:1428089/1‑239 (MQ=255) gTGGAAGTAAAGAGATCGGCTCCGCAGACAACACAAAGAATCAGCCCCAGAG‑AGAAGCAAATGCCGCCAACCAGTTTTGCCATGCCGAAGGGCATTGTGCCTGTGCCAGTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAAACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGGA‑TGTTT‑CGTTGCTTTTTAGACACCCGCCTCTTCGGCCC‑CTTTGGCCATTgc > 1:1547935/1‑239 (MQ=255) gTGGAAGTAAAGAGATCGGCTCCGCAGACAACACAAAGAATCAGCCCCAGAG‑AGAAGCAAATGCCGCCAACCAGTTTTGCCATGCCGAAGGGCATTGTGCCTGTGCCAGTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAAACACCGGCGGTAATCGCCAGAAAGAAAGGATTAAGCGGA‑TGTTT‑CGGTGATTTATAGACACCCGCCTCCTCGGGCACCTTTGGCAAtgg > 1:1391442/1‑237 (MQ=255) tGGAAGTAAAGAGATCGGCTCCGCAGACAACACAAAGAATCAGCCCCAGAG‑AGAAGCAAATGCCGCCAACCAGTTTTGCCATGCCGAAGGGCATTGTGCCTGTGCCAGTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAAACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGGA‑TGTTT‑CGTTGCTTTATAGACACCCGCCTCTTCGGCCA‑CCTTGGCCATTgca > 1:4783/1‑239 (MQ=255) agagATCGGCTCCGCAGACAACACAAAGAATCAGCCCCAGAG‑AGAAGCAAATGCCGCCAACCAGTTTTGCCATGCCGAAGGGCATTGTGCCTGTGCCAGTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAAACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAACGGA‑TGTTT‑CGTTGCTTTTTAGACACCCGCCCCTTCGGCCC‑CTTTTGCCATTGCAGCA‑GGaaag > 1:1635893/1‑237 (MQ=255) gagaTCGGCTCCGCAGACAACACAAAGAATCAGCCCCAGAG‑AGAAGCAAATGCCGCCAACCAGTTTTGCCATGCCGAAGGGCATTGTGCCTGTGCCAGTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAAACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAACGGA‑TGTTT‑CGTTGCTTTATAGACACCCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGTa > 1:842849/1‑239 (MQ=255) aTCGGCTCCGCAGACAACACAAAGAATCAGCCCCAGAG‑AGAAGCAAATGCCGCCAACCAGTTTTGCCATGCCGAAGGGCATTGTGCCTGTGCCAGTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAAACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGGA‑TGTTT‑CGTTGCTTTATAGACACCCCCCTCCTCCGCCA‑CTTTGGCCATTGCAGCA‑GGAAGGaaaa > 1:425636/1‑239 (MQ=255) cTCCGCAGACAACACAAAGAATCAGCCCCAGAG‑AGAAGCAAATGCCGCCAACCAGTTTTGCCATGCCGAAGGGCATTGTGCCTGTGCCAGTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAAACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGGA‑TGTTT‑CGTTGCTTTATAGACACCCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGTAAAAGATCa > 1:1781863/1‑239 (MQ=255) cTCCGCAGACAACACAAAGAATCAGCCCCAGAG‑AGAAGCAAATGCCGCCAACCAGTTTTGCCATGCCGAAGGGCATTGTGCCTGTGCCAGTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAAACACCGGCGGTAAACGCCAGATAGAAAGTCTTAAGCGGA‑TGTTT‑CGTTGCTTTATAGACACCCCCCTCCTTGGCCC‑CCTTGGCCCATGCCGCA‑GGAAGTAAAACAtac > 2:562359/1‑237 (MQ=255) cGCAGACAACACAAAGAATCAGCCCCAGAG‑AGAAGCAAATGCCGCCAACCAGTTTTGCCATGCCGAAGGGCATTGTGCCTGTGCCAGTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAAACACCGGCGGTAAACGCCAGGAAGGAAAGCTTAAGCGGG‑TGGTT‑TGTTGCTTTATAAGAACCCGCCCCTTTGGCCA‑CTTTGGCTCTTGCAGGAGGGAAGAAAAAGA‑Caaaa > 2:22162/1‑239 (MQ=255) acaaAAAGATCCAGCCCCAGAG‑AGAAGAAAGTGCCCCAACCCTGTTTTCCAGTGCCGAAGTGTTTGGTCCCTGTCCCAGTGTGTCCTGTAATAAAGAAGACGAATCCGTTTGAGTTAAAACCACCGGCGGTAACCGCTAGATAAAAAGTCTTAAGCGGA‑TGTTT‑CGTTGTTTTATATACACCCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGTAAAAGATCAAAAGGGTTGTc < 2:1428089/239‑1 (MQ=255) cacaAAGAATCAGCCCCAGAG‑AGAAGCAAATGCCGCCAACCAGTTTTGCCATGCCGAAGGGCATTGTGCCTGTGCCAGTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAAACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGGA‑TGTTT‑CGTTGCt < 1:236217/170‑1 (MQ=255) aaaGAATCCGGCCGAGGGCAGAACAAAAGGCCGCCAACAAGTTGGACCAGCGCGAGGGGCTGTGGGCCGGTGCCGGTGGTGTGTGTGAAAAAGACGGAGAGTGGGGTGGAGATGAAAACCCGGGGGGTAATCGCAAGAAAGAAAGTCTAAAGCGGT‑TGTTT‑GGTTGTTTTATAGACACCCGCCTCTGCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGTAAAAGATCAAAAGGGTTGTCAGc < 2:1554164/239‑1 (MQ=255) aaTCACCCCGAGAG‑AGAAGAAAGTGCCGCGACCCATTTTGCCCAGGCCGAAGGGCTTTGTGCCTGGGCAAGTGGTTGCTGTAAAATAGAAGACAAATGCAATTGAAAGGAAACCCCCGGCGGTAATCCCAAGATAGAAAGTCTTAAGGGGA‑TGTTT‑CGTTGTTTTATAGACCCCCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGTAAAAGATCAAAAGGGTTGTCAGCttt < 2:4783/237‑1 (MQ=255) tCAGCCCCAGAT‑AGAATCAAATGCCGCCACCCAGTTTAGCCATGCAGAAGGGCTTTGGCCCTGTGCGAGTGTGTGTGGTAAAATAGAAGAGAAATGCGATGAAGATGAAACCACCGGTGGAAATCCCAAGAAAAAAAGCCTTAGGTGGA‑TTTTT‑GGTTGTTTTAGAGCCGCCCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTcaca < 2:1591431/239‑1 (MQ=255) cAGCCCCAGAG‑AGAAGCAAATGCCGCCAACCAGTTTTGCCATGCCGAAGGGCATTGTGCCTGTGCCAGTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGCTGAAAACACCGGCGGGAAACGCCAGGTAGAAAAGCTTAAGCGGA‑GGTTT‑CGTTGCTTTATATacac > 2:236217/1‑170 (MQ=255) ccccAGAG‑AGAAGCAAATGCCGCCAACCAGTTTTGCCATGCCGAAGGGCATTGTGCCTGTGCCAGTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAAACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGGA‑TGTTT‑CGTTGCTTTATAGACACCCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGTAAAAGATCAAAAGGGGTGTCAGCTTTCACACTa > 1:1591431/1‑238 (MQ=255) ccccAGAG‑AGAAGCAAATGCCGCCAACCAGTTTTGCCATGCCGAAGGGCATTGTGCCTGTGCCAGTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAAACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGGA‑TGTTT‑CGTTGCTTTATAGACACCCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGGAAAAGATCAAAAGGGTTGTCAGCTTTCACACTa > 1:637926/1‑238 (MQ=255) acaagagcagacAAAAGCCACAAACCAGTTTTGCCCTGCGAGAGGGTTTTGGGCGGGTGCAGGGGGTGGCGGGGAGAAAGAAGAAGAATGCAATGGAGAAGACACCCCGGGAGTAAACCGCAAAAAAAAAAGTCTAAAGCGGA‑GTTTT‑GTTTGTTTTATAGACCACCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAAct < 2:2129506/228‑1 (MQ=255) agag‑agAAGCAAATGCCGCCAACCAGTTTTGCCATGCCGAAGGGCATTGTGCCTGTGCCAGTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAAACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGGA‑TGTTT‑CGTTGCt < 1:1802662/153‑1 (MQ=255) aGCAAATGCCGCCAACCAGTTTTGCCATGCCGAAGGGCATTGTGCCTGTGCCAGTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAAACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGGA‑TGTTT‑CGTTGCTTTATAGACACCCGCCTCTTCGGCCA‑CTTTGGCCATTTCAGCA‑GGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTa > 1:1438812/1‑227 (MQ=255) aaaTGCCGCCAACCAGTTTTGCCATGCCGAAGGGCATTGTGCCTGTGCCAGTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAAACACCGGCGGTAATCGCCAGATAGAAAGGTCTAAGCGGA‑TGGTT‑CGTTGCCTTATAGacac > 2:1802662/1‑153 (MQ=255) aaggacGAGGGACATTGTGCTGGGCCCAGTGGTTGTGGTAATAAAAAAGAAGAATGCGATTGAGAAAAACACCCCGGCGGTAACCGCAAGATAAAATGTCTTAGGGGTT‑TGTTT‑CGTTGTTTTAAAGACACCCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACa < 2:425636/234‑1 (MQ=255) ccGAAGGGCATTGTGCCTGTGCCAGTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAAACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGGA‑TGTTT‑CGTTGCTTTATAGACACCCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGGAAAAGATCAAAAGGGTTGGCAGCTTTCACACTAACTCTCTCTTTATTAAg > 1:1685524/1‑215 (MQ=255) ccGAAGGGCATTGTGCCTGTGCCAGCGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAAACACCGGCGGTAATCGCCCGATAGAAAGTCTTAAGCGGA‑TGTTT‑CGTTGCTTTATAGACACCCGCCTCTTCGGCCA‑CTTTGGCCCTTGCAGCA‑CGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACCCTCTCTTTATTAAGCCGGCGCCGCGATACTAACaaaac > 2:1254309/1‑237 (MQ=255) cATTGTGCCTGTGCCAGTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAAACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGGA‑TGTTT‑CGTTGCTTTATAGACACCCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAACATTATAGa > 1:1372162/1‑239 (MQ=255) gtgccAGTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAAACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGGA‑TGTTT‑CGTTGCTTTATAGACACCCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTttatt > 1:171247/1‑194 (MQ=255) gtgccAGTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAAACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGGA‑TGTTT‑CGTTGCTTTATAGACACCCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATGAGAAATTg > 1:2104065/1‑239 (MQ=255) gtgccAGTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAAACACCGGCGGTAATCGCCAGATAGAAAATCTTAAGCGGA‑TGTTT‑CGTTGCTTTATAAACACCCGCCTCTTCGGCCA‑CTTTTGCCATTTCAGCA‑GGAAGTAAAAGATCAAAAAGGTTGTCAGCTTTCACACTAACTCTCTCTTTTTTTAGTCGGCGCCCAGAAACTAACAAAACATTAACGATGGGAAATTg > 2:347815/1‑239 (MQ=255) ccAGTGGTTGCTGTAATATAAAAGACGAAGGCGTTTGAGATAAAAACCCCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGGA‑TGTTT‑CTTTGTTTTATAGACCCCCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATGAGAAATTGat < 1:22162/238‑1 (MQ=255) aGTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAAACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGGA‑TGTTT‑CGTTGCTTTATAGACACCCGCCTCTTCGGCCA‑CTTTTGCCATTGCAGCA‑GGAAGTAAAAGATCAAAAGGGGTGTCa > 1:100461/1‑163 (MQ=255) aGTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAAACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGGA‑TGTTT‑CGTTGCTTTATAGACACCCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGTAAAAAATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATGAGAAATTGAtata > 1:1941365/1‑239 (MQ=255) tGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAAACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGGA‑TGGTT‑CGTTGCTTTATAGACACCCCCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAATTCGGCGACGAGATACTAACAAAGCATtata > 1:1831921/1‑220 (MQ=255) tgATATAGAAGACGAATGCAATGGAGATAAAACCCCCGGGGGTAATCGCAAGAAAGAAAGTTTTAAGGGGG‑TGTTT‑CTTTTTTTTAAAGACCCCCGCCTCTTCGGCCA‑CTTTGGCCATTgcagca < 1:654274/125‑1 (MQ=255) atatAGAAGACGAAGGCGATTGATAAGAAACCCCCGGCGGTAACCGCGAAATAGAAATTTTTAAG‑GGG‑TGTTTGCGTTGCTTTATAGACCCCCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATGAGAAATTGATATAGATCATATCTCGc < 1:1337100/239‑1 (MQ=255) atatAGAAGACAAATGCGAGTGAGAAAAAACCCCCGGGAGAAAGCGACAGATAAAAAGTCTAAGGCGGT‑TGTTT‑CTGGGCTTAAAAGACCACCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGcgac < 2:1473696/187‑1 (MQ=255) gaCGAATGCGATTGAGATGAAAACACCGGCGGTAATCGCCAGATAGAAAAGCTTAAGCGGG‑TGTTT‑CGTTGCTTTATAGACACCCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGTaaaa > 2:654274/1‑125 (MQ=255) cGAATGCGATTGAGATGAAAACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGGA‑TGTTT‑CGTTGCTTTATAGACACCCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCC‑GGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTaa > 1:1473696/1‑187 (MQ=255) aaggggATTGAAATAAAACCCCGGGCGTTAATCGACAGATAAAAAGTTTAAAGGGGT‑TGTTT‑CTTTGTTTTATAGACCCCCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATGAGAAATTGATATAGATCATATCTCGcc < 1:347815/223‑1 (MQ=255) gATTGAGAGAAAAACCCCGGCGGTAATCGCCAGAGAAAAAGTCTTAAGCGGT‑TTTTT‑CTTTGTTTTATAGACACCCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATGAGAAATTGATATAGATCATATCTCGCCTGGCTTATAGGCCCGt < 1:137487/239‑1 (MQ=255) atttGAGATAAACCCCCCGGCGTATACCGCCAG‑TAAAAAAGCTTAAGGGGGTTGTTG‑CTTTGTTTTATAGACCCCCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATGAGAAATTGATATAGATCATATCTCGCCTGGCTTATAGGCCCGt < 1:615952/237‑1 (MQ=255) gaaaccccgggcggTAATCGCAAGATAGAAAGTCTTAAGGGGA‑TGTTT‑TGTTGTTTTATAGACACCCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATGAGAAATTGATATAGATCATATCTCGCCTGGCTTATAGGCCCGTAACTCGCAt < 1:562359/230‑1 (MQ=255) aaCACCGGCGGTAATCGCCAGATAGAAAGTTTTAAGCGGA‑TTTTT‑CGTTGTTTTATTGACACCCGCCTCTTTTGGCA‑CTTTTGCCATTTTAGCA‑GGAAGTaaaa > 1:32514/1‑104 (MQ=255) cggcggTAATCGCCAGATAGAAAGTCTTAAGCGGA‑TGTTT‑CGTTGCTTTATAGACACCCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATGAGAAATTGATATAGATCATATCTCGCCTGGCTTATAg > 1:192786/1‑216 (MQ=255) tttaaggCGGA‑TGTTT‑AGTTGTTTTAGAGACCCCCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAg < 2:1006162/138‑1 (MQ=255) ttAAGCGGA‑TGTTT‑CGTTGCTTTATAGACACCCGCCTCTTCGGCCA‑CTTTGGCCATTgcagca > 1:1394116/1‑63 (MQ=255) aGCGGA‑TGTTT‑CGTTGCTTTATAGACACCCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATGAGAAATTGATATAGATCATATCTCGCCTGGCTTATAGGCCCGTAACTCGCATGGTTTTTATGCAAATACGGAGTAAat > 1:2041938/1‑228 (MQ=255) cGGA‑TGTTT‑CGTTGCTTTATAGACACCCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATGAGAAATTGATATAGATCATATCTCGCCTGGCTTATAGGCCCGTAACTCGCATGGTTTTTATGCAAATACGGAGTAAatat > 1:1472771/1‑228 (MQ=255) a‑TGTTT‑CGTTGCTTTATAGACACCCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGAt > 1:1006162/1‑144 (MQ=255) t‑CGTTGCTTTATAGACACCCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGcgac > 2:1072591/1‑114 (MQ=255) t‑CGTTGCTTTATAGACACCCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGcgac < 1:1072591/114‑1 (MQ=255) gCTTTATAGACACCCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATGAGAAATTGATATAGATCATATCTCGCCTGGCTTATAGGCCCGTAACTCGCATGGTTTTTATGCAAATACGGAGTAAATATTTGa > 1:1365783/1‑219 (MQ=255) | ATGCGCCCACTCGCCTTAGCAACAACAATCAACACGGTGGAAGTAAAGAGATCGGCTCCGCAGACAACACAAAGAATCAGCCCCAGAG‑AGAAGCAAATGCCGCCAACCAGTTTTGCCATGCCGAAGGGCATTGTGCCTGTGCCAGTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAAACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGGA‑TGTTT‑CGTTGCTTTATAGACACCCGCCTCTTCGGCCA‑CTTTGGCCATTGCAGCA‑GGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATGAGAAATTGATATAGATCATATCTCGCCTGGCTTATAGGCCCGTAACTCGCATGGTTTTTATGCAAATACGGAGTAAATATTTGA > NC_000913/954153‑954605 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |