| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,449,045 | 0 | T | G | 24.4% | 200.9 / 14.4 | 90 | intergenic (+3/+77) | chpB/ppa | toxin of the ChpB‑ChpS toxin‑antitoxin system/inorganic pyrophosphatase |
| Reads supporting (aligned to +/- strand): ref base T (26/42); new base G (20/2); total (46/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.41e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ACTGGGAATGACGCTGGTGGCCCCCATTACGCAGGGCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGCG‑TTTTCCCAACCTTCAAC‑TTTCACC‑CACTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGTGAGCGATTTGCGCTTTCAGCAGTTCAGGCAGATCGTTAA > NC_000913/4448817‑4449282 | aCTGGGAAGGGCTCTGGTTGCCCCCATTCCGCAGGGCGGAAATTTTGCCCGTTATGCCGGATTTAGCGGTCCTTTCCATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTGCACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGtt‑tattt < 2:877614/239‑1 (MQ=255) cTGGGAATGACGCTGGTGGCCCCCATTACGCAGGGCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATAGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGGGGTGGAAGAGCCGTTATTACGCTTGCAGCGGGAGGTGGAATAAAGTGGGtt‑tacttt > 2:1652962/1‑238 (MQ=255) gAATGACGCTGGTGGCCCCCATTACGCAGGGCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATcg < 1:924484/238‑1 (MQ=255) cGCTGGTGGCCCCCATTACGCAGGGCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCa < 1:473198/238‑1 (MQ=255) gtggCCCCCATTACGCAGGGCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGGTGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGATGCGGATGCGGTGGGGGAAGAGGCGATATTACGCTTGCAGGCGGTGGTGGAGTAAGGGGTGTTATGTTTAT‑GCGGGccagaaaa > 2:1302895/1‑232 (MQ=255) cccATTACGCAGGGCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGGGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCt > 1:406977/1‑239 (MQ=255) ttACGCAGGGCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACt < 1:1072097/239‑1 (MQ=255) ggCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGGGGGGGGATAAGGGGTGgt‑tttt > 2:637037/1‑204 (MQ=255) gCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAg > 1:271648/1‑238 (MQ=255) ggAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGGTGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGcc < 1:1302895/238‑1 (MQ=255) ttGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGGGGAAGAGGCGTTATTATGCTTGCAGGCGGTGGGGGAGTAAGGGGTGGT‑TTTTTTTTGCGGGCCTAAAAAAACACTTACTAACTGAGGCCCGGCGTTc > 2:645065/1‑239 (MQ=255) ttGCACGTTATGGCGGATTTAGCGTTACTGTACATTGAGGAGTAGGCGATATGCACGGCGTTGTGCTGTTGAATCAGGTGCGGATGATGGCTCTACTCGCCCGGCTTGCATAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATCAGGTGTGTT‑TATTTATCGCGGGCATAAAAAACCCCGTACTAACCGATGCCCGGCGTTc < 2:920396/239‑1 (MQ=255) gCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAg < 1:1652962/239‑1 (MQ=255) aTGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGttat < 2:271648/238‑1 (MQ=255) tGCCGGATGTAGCGTACCGTTACAGTGCGAAGAATGCGATGTTCCCGGCGTGATGCTGAGAAGTCAGGTGCGTATGATGGATCTGCACGCCCGGCTGGCAAAGCTTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCTAAGCCCGGCGTTCAGGGttatta < 2:852340/239‑1 (MQ=255) gTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACt < 1:431328/239‑1 (MQ=255) ttGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGGGGTGGAGGAGGCGTTATTACGCTTGCAGGCGGTGGGGGAATAAGGGGTGgt‑tttt > 2:1528177/1‑160 (MQ=255) cGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGGGGAATAAGGTGGGTT‑TATTTATCGCGGGCATAAAAAAACCCTTAATAACCGAAACCCGGCGGTCAGGGGTTTTACGCCAGAAGAACTTATTTTTTCttttc > 1:1145200/1‑237 (MQ=255) ggCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGGGTGGT‑TATTTATCGCGGGCATAAAAAAAACCTTACTAACCGAAAGCCGGCGGTTAGGGTTATTAAGCCAGAAGAACTTATTTATTCTTTGCGCGCTCg > 1:1610408/1‑239 (MQ=255) tgCACGGCGTTGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAGGGGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGtt < 1:136891/187‑1 (MQ=255) tggtgCTGGTGAATCGGGTGCTGATGATGGATCTACACGCCCGGCTGGCAAAGCGCATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGttat < 2:1655286/187‑1 (MQ=255) ggtgCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGGGGGATAAGGGGGGTT‑TATTTATCGAGGGGATAAAAAAACCCTTACCAACCGAAGCCCGGCGTTCAGGGGTATTTCGCGCGAAAAACTTTTTTTTTCTTTGCTCGCTCGCAAGAGGCaccactttt > 2:1544243/1‑231 (MQ=255) ggtgCTGGCGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGGGGAGGAACAAGGGGGGTT‑TATTTATCTCGGGCTCAAAAAAAACCGTATAAAATGAAGACCGGGGCGCAgggggatt > 2:136891/1‑182 (MQ=255) tGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGGGGAATAAGGGGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTTTTCTTTGCGCGCCCGAAGGAGGCAAAGATTTcc > 1:951806/1‑234 (MQ=255) tGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGGGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAAGTGTGGT‑TATTTTTTCCGGGCATTAAAAAACCCTTACTAACCCAAGCCCGGCGTTCAGGGGTTTTAAACCACAAGGACATTTTTATTTGTTTCGCCGTCGAACGCTGCAAccactttcaatt > 2:25631/1‑228 (MQ=255) gTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTa > 2:1682629/1‑239 (MQ=255) gTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGGGGGATAAGGTGTGGT‑TATTTATCGCGGGCATAAAAAAAACCTTTCTAACCGAAACCCGGCGTTTAGGGGTTTTTCGCCAGAAGAACTTATTTTTTCTTTTCGCGCTCGCAGGGGTGTACGAGTTCAggtctt > 2:134315/1‑234 (MQ=255) gAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGGGGAATAAGGGGGGTT‑TATTTATCGGGGGCATAAAAAAACCCTTACTAACCGAAACCCGGGGTTCAGGGGTATTACGCCaaaa > 1:1655286/1‑187 (MQ=255) tCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCg > 1:1791321/1‑160 (MQ=255) tCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCg < 2:1791321/160‑1 (MQ=255) ggATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGCg < 1:134315/238‑1 (MQ=255) gatgatGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGccc < 2:1437424/150‑1 (MQ=255) gatgatGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGccc > 1:1437424/1‑150 (MQ=255) taaggATCCACACGCCCTGCTGGCCAAGCGTATTGGTCTGGGTGCGGATGAAGTGGTGGAAGAGGCGTTATTACTCTTGCAGGCGGTAGTGGAATAAGGGGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGttat < 2:1146232/159‑1 (MQ=255) tgGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGCG‑TTTTccc < 1:1682629/239‑1 (MQ=255) ggATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCag > 2:681656/1‑167 (MQ=255) ggATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCag < 1:681656/167‑1 (MQ=255) tACACGCCCGGAGAGACAAGCGTATTGGTCGGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTCCGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCTCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGCG‑TTTTCCCAACCtt < 2:1185612/239‑1 (MQ=255) cacGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAACGGCTTCTTCGTTTTTCCCAACCtc > 1:683179/1‑237 (MQ=255) cacGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGGGGAATAAGGTGTGGT‑TATTTATTGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGGCGTCAGGGTTATTACGCCagaa > 1:1146232/1‑162 (MQ=255) ccGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGGGGAATAAGGGGGGGT‑TATTTATTGCGGGGATAAAAAAACCCTTACTAAACGGAGCCCGGGGTTTAGGGCTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTTAAGTTTAGTGGCCTTTGCGTTTTTCCCAACTTCCAAC‑t > 2:1815296/1‑238 (MQ=255) ggCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGGGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGGTATTACGCCAGAAGAACTTATTTATTCTTTGCGCTCTCGAAGGAGGCAACGATTTTAGCTTTATCGGATTTTTCG‑TTTTTCCAAACTTCCAC‑CTTc > 2:170030/1‑238 (MQ=255) gCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGGGGAATAAGGGGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGGTCAGGGGTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCCCGAAGGAGGCAACGATTTCAGCTTTAGCGGGTTCTGCG‑TTTTTTCAACCATCAAA‑CTTCa > 2:433995/1‑238 (MQ=255) tGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAgaagaa < 1:1688738/155‑1 (MQ=255) aaGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATaaa > 2:910256/1‑99 (MQ=255) aaGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATaaa < 1:910256/99‑1 (MQ=255) tATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTCCTAACCGAAGCCCGGCGTTCa < 1:1005997/125‑1 (MQ=255) tATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGGGGAAGAAGGGGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAAACGAAGCCCGGGGGTCAGGGTGAGTACGCCAGAAGAAAttatttaat > 2:1688738/1‑153 (MQ=255) tatggatgtggatgAGGTGGTGGAAGAGGACTTAATACGCTTGAAGGCGGTGGGGAGAAAAGATGTTTT‑TATTTATCGCGGGCATAAACAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGTAGAACTTATTTATTCTTTGCGCGCTCGAATGAGGCAACGATTTCAGCTTTAGCGGCTTCTGCG‑TTTTCCCAACCTTCAGC‑TTTCACC‑CACTTGCATATTTCGa < 2:1610278/236‑1 (MQ=255) tCTGGCTGGGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGGGGGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATGTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGCG‑TTTTCCCAACCTTCAAC‑TTTCACC‑CACTTGCCTTTTTCGa < 1:759907/238‑1 (MQ=255) tCTGGCTGCGGATGAGGTGGTGGAGGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGCG‑TTTTCCCAGCCTTCAAC‑TTTCACC‑CACTTGCCTTTTTCGa < 2:687745/238‑1 (MQ=255) tCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGCG‑TTTTCCCAACCTTCAAC‑TTTCACC‑CACTTGCCTTTTTCGa < 1:1815296/238‑1 (MQ=255) tCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGCG‑TTTTCCCAACCTTCAAC‑TTTCACC‑CACTTGCCTTTTTCGa < 1:1893850/238‑1 (MQ=255) gCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGGATAAGGGGTGTT‑TATTTATCGCGGGCCTAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACCATTTCAGCTTTTGCGGCTTCTTCG‑GTTTCCCAACCCTCAAC‑TTTCACC‑CACTTGCCctttttctggtct > 2:109753/1‑231 (MQ=255) gCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTgcg < 2:1997664/152‑1 (MQ=255) gCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTgcg > 1:1997664/1‑152 (MQ=255) gCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGGGGAATAAGGGGGGGT‑TATTTATCGCGGGCATAAAAAAAACCTTAATAACCGAAGCCCGGCGTTCAGGGGTATTAAGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTATCGGCTTCTGCG‑GTTTTCCCACCTTCCAC‑TTTCACC‑CACTTGCCTTTTTCGTGGTCt > 2:151887/1‑239 (MQ=255) gCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGGGGGGGGATAAGGTGGGTT‑TATTTATTGCGGGGATAAAAAAACCCTTTCTAACCGAAGACCGGCGTTCAGGGTTAATAc > 2:1005997/1‑125 (MQ=255) cGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGGGGAATAAGGGGTGGT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGGTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTTTGCG‑TTTTTCCCACCTTTAAC‑TTTTACC‑CCCTTGCCTTTTTCGAGGGCTTTGt > 2:243620/1‑239 (MQ=255) ggATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGCG‑TTTTCCCAACCTTCAAC‑TTTCACC‑CACTTGCCTTTTTCGAGGTCTTTGTa > 1:183679/1‑239 (MQ=255) gATGAGGGAGTGGAAGAGGCGTTATTACGGTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGCG‑TTTTCCCAACCTTCAAC‑TTTCACC‑CACTTGCCTTTTTCGAGGTCTTTGTa < 2:406977/238‑1 (MQ=255) gggtgtgggaggaGGCGTTATTCGGCTTCCAGGCGGTGTTGGATTAAGGTGTGTT‑TATTTACCGCGGG‑AAAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGCG‑TTTTCCCAACCTTCAAC‑TTTCACC‑CACTTGCCTTTTTCGAGGTCTTTGTAGTGc < 1:645065/230‑1 (MQ=255) gtggtgGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGCG‑TTTTCCCAACCTTCAAC‑TTTCACC‑CACTTGCCTTTTTCGa < 1:1418677/222‑1 (MQ=255) tggAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTgcg < 1:292477/136‑1 (MQ=255) agagGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGGGTGTT‑TATTTTTCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGGTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGTG‑TTTTCCCAACATTCAAC‑TTTTACC‑CCCTTGCCCTTTTTGAGGTGTTTGTAGTGCTCGAAGAAGTg > 2:287787/1‑239 (MQ=255) agGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGGGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGGTCAGGGGTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTAAGCTTTATCGGCTTTTTCG‑GTTTTCCACACTTCAAC‑CTTTACCACAC‑TGCCTTTTTCCGGGGCCTTGTa > 2:1418677/1‑222 (MQ=255) cGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAAccc > 2:1649415/1‑66 (MQ=255) cGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAAccc < 1:1649415/66‑1 (MQ=255) cGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGCG‑TTTTCCCAACCTTCAAC‑TTTCAc < 1:1902702/192‑1 (MQ=255) gTTATTACGCTTGCAGGCGGCGGGGGTAAAAGGGGGGGT‑TATTTAACCCGGGCATCAAAAAACCAGTACTAACCGAAACCCGGCGGTTAGGGTTATTACGACAGAAGAAATTTTTTATTCTTTGCGCGCTCGAagg > 2:292477/1‑136 (MQ=255) tattaCGCTTGCAGGCGGTGGTGGAATAAGGTGTGtt < 1:2035207/37‑1 (MQ=255) attaCGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGCG‑TTTTCCCAACCTTCAAC‑TTTCAc > 1:805329/1‑188 (MQ=255) cTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGCG‑TTTTcc < 2:527900/165‑1 (MQ=255) cTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGCG‑TTTTcc > 1:527900/1‑165 (MQ=255) cTTGCAGGCGGTGGTGGAATAAGGGGTGTT‑TTTTTATCGCGGGCCTAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTTTTTATTCTTTGCGCGCTCGAAGGAGGCCACGATTTCAGCTTTAGCGGCTTCTGCG‑TTTTCCCCCCCTTCCACTTTTCAcc‑cctttc > 2:1902702/1‑185 (MQ=255) gCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCg > 1:1685570/1‑70 (MQ=255) gCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCg < 2:1685570/70‑1 (MQ=255) gCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGCG‑TTTTCCCAAACTTCAAC‑TTTTACC‑CACTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGAGAACGATTTGCGCTTTcc > 1:777550/1‑237 (MQ=255) ttgtggAATAAGGTGTGTT‑TATTTAGCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGCG‑TTTTCCCAACCTTCAAC‑TTTCACC‑CACTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGTGAGCGATTTGCGCTTTCAGCAGTTCa < 2:951806/236‑1 (MQ=255) ggAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGCG‑TTTTCCCAACCTTCAAC‑TTTCACC‑CACTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGTGAGCGATTTGCGCTTTCAGCAGTTCAGGCa < 1:243620/238‑1 (MQ=255) aaTAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGCG‑TTTTCCCAACCTTCAAC‑TTTCACC‑CACTTGCCTTTTTCGa > 2:2075525/1‑182 (MQ=255) aaTAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGCG‑TTTTCCCAACCTTCAAC‑TTTCACC‑CACTTGCCTTTTTCGa < 1:2075525/182‑1 (MQ=255) aaTAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGCG‑TTTTCCCAACCTTCAAC‑TTTCACC‑CACTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGTGAGCGATTTGCGCTTTCAGCAGTTCAGGCAGa < 1:287787/238‑1 (MQ=255) aaTAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGCG‑TTTTCCCAACCTTCAAC‑TTTCACC‑CACTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGTGAGCGATTTGCGCTTTCAGCAGTTCAGGCAGa < 1:1822679/238‑1 (MQ=255) aaTAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGCG‑TTTTCCCAACCTTCAAC‑TTTCACC‑CACTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGTGAGCGATTTGCGCTTTCAGCAGTTCAGGCAGa < 1:170030/238‑1 (MQ=255) tAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGCG‑TTTTCCCAACCTTCAAC‑TTTCACC‑CACTTGCCTTTTTCGAGGTCTTTGTAGTGTTCGAAGAAGTGAGCGATTTGCGCTTTCAGCAGTTCAGGCAGATCg > 1:498561/1‑239 (MQ=255) aGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGt > 1:708889/1‑56 (MQ=255) aGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGt < 2:708889/56‑1 (MQ=255) aGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGCG‑TTTTCCCAACCTTCAAC‑TTTCACC‑CACTTGCCTTTTTCGAGTTCTTTGTAGTGCTCGCAGAAGTGCGCGATTTGCGCTTTCGGCAGTTCAGGCAGATCGtg > 2:506918/1‑238 (MQ=255) aGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTAAGCTTTAGCGGCTTCTGCG‑TTTTCCCAACCTTCCAC‑TTTCCCC‑CACTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGCAGTGAGCGATTTGCGCTTTCAGCAGTTCAGGCCGATCGtt > 2:1246318/1‑239 (MQ=255) tgtgtT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGCG‑TTTTCCCAACCTTCAAC‑TTTCTCC‑CACTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGTGAGCGATTTGCGCTTTCAGCAGTTCAGGCAGATCGTTaa < 1:1012612/238‑1 (MQ=255) tgtgtT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGCG‑TTTTCCCAACCTTCAAC‑TTTCACC‑CACTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGTGAGCGATTTGCGCTTTCAGCAGTTCAGGCAGATCGTTaa < 1:275260/238‑1 (MQ=255) | ACTGGGAATGACGCTGGTGGCCCCCATTACGCAGGGCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTATTGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTGTT‑TATTTATCGCGGGCATAAAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACGCCAGAAGAACTTATTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGCG‑TTTTCCCAACCTTCAAC‑TTTCACC‑CACTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGTGAGCGATTTGCGCTTTCAGCAGTTCAGGCAGATCGTTAA > NC_000913/4448817‑4449282 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |