| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | = 1207805 | 5 (0.110) | 36 (0.880) | 32/252 | 0.3 | 81.4% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_bme_pgi | = 1209602 | 12 (0.290) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
CACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGC > NC_000913_3_bme_pgi/1209454‑1209748 | cacGTAAATCAGGCAATTTATTTGTGGGATAAGCCTTTGCCAGGTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTACATTATTTCGGTCTTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCcgag > 1:188536/1‑149 (MQ=255) aCGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGc > 1:248777‑M2/1‑148 (MQ=255) tAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGcctt < 2:669279‑M2/149‑5 (MQ=255) aTCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGccttctc < 1:59371‑M2/149‑8 (MQ=255) tCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGccttctcc < 1:574990‑M2/149‑9 (MQ=255) gCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGccttctcccaaa < 2:426462‑M2/149‑13 (MQ=255) ttatttGTCGGATAAGCCTTCGCCAGGTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATGGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGccttctcccaaaccaag > 2:427956‑M2/1‑132 (MQ=255) tggcGGATAAGCCTTCGCTAGTTCCGGGTATTCTTCAGCCGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCTGAGTGGCTGAAGGCCACGGAACCGGAACACCAACA‑GGTAATGCAGAGCCTTCTCCCAAACCAAGGtttt < 1:615766/146‑2 (MQ=255) ggATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGccttctcccaaaccaaggttttcgag > 1:669279‑M2/1‑123 (MQ=255) aaGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCGTTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATg > 2:81930/1‑149 (MQ=255) gCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATGTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgt > 2:187837‑M2/1‑117 (MQ=255) gCCTTTGATAGTTCCGGGTATTCTCCAGAAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgt > 2:488923‑M2/1‑117 (MQ=255) cTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgttt > 1:478685‑M2/1‑115 (MQ=255) cTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgttt > 2:501090‑M2/1‑115 (MQ=255) ccAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGccttctcccaaacccaggtcttcgagagccgtttgcaca < 2:471457‑M2/149‑40 (MQ=255) cAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAAc > 1:345924/1‑149 (MQ=255) ttCCGGCTATTCTTCAGCAGAAAATGCGGCACCATTGCATTTCAGCCAGCCTTTTGGCGGAGTGGCTGAAGGCCACGGAATCGGGACGCCAACA‑GGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgc > 2:226901‑M2/1‑106 (MQ=255) gTATTCTTCAGCAGAAAAAGAGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATg < 2:277370/149‑1 (MQ=255) tATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccga > 1:161894‑M2/1‑99 (MQ=255) ttctccAGCAGAAAACGCGGCACCACTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatt > 2:311170‑M2/1‑97 (MQ=255) agcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatat < 2:607839‑M2/149‑59 (MQ=255) gcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGGTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACG‑GGTAATGCCGGGccttctcccaaaccaagggtttcaagagccgttttcacgttgccatccgatttgatatc < 2:719538‑M2/149‑60 (MQ=255) aaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaa < 1:805479‑M2/149‑66 (MQ=255) ggCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttcatatcgccaaacggct < 1:128414‑M2/149‑71 (MQ=255) aCCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg < 2:59371/149‑1 (MQ=255) ttGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcg > 1:280729‑M2/1‑72 (MQ=255) tgcagccagcctGTTGGCGGAGCGGTTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGccttctcccaatcgaagtttttcgagagccgtttgaaccgggccatccgatttgatatcgccaaacggattcttgcggcttaa > 2:46324‑M2/3‑66 (MQ=255) cagccagcCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaaca > 1:417082‑M2/1‑64 (MQ=255) cagccagcCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATg < 1:81930/149‑1 (MQ=255) gccTGTTGGCGAAGAGGCTCGAGGCCACGGAACCGGGACAAATTGATGGTTA‑GCCGAGCCTTCCCCCCCGCCAACGTGTTTGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTAtt > 2:577372/1‑149 (MQ=255) ccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTg > 1:412380/1‑149 (MQ=255) gTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCt > 1:318242/1‑149 (MQ=255) gCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagt > 1:236782‑M2/1‑50 (MQ=255) ggAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacaccagcgcgcgaagtgc < 1:407202‑M2/149‑102 (MQ=255) ggAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCGATGTAc > 2:64980/1‑149 (MQ=255) gggtgGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcg > 2:440607‑M2/3‑47 (MQ=255) gAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcg > 1:607839‑M2/1‑47 (MQ=255) gTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggt > 1:401883‑M2/1‑45 (MQ=255) gCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgcgatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaag < 2:748001‑M2/149‑108 (MQ=255) gAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaa > 1:381930‑M2/1‑39 (MQ=255) aaGGACACGTAATCGGGACACCTACA‑TGTAATGCAGAAccttctcccaaaccaaggtttccgagagccgtttgcatagtaccatccgaattgatatcgccaaacggattcttgccgcttaacagcagcgcgcgaagtgcggtaagtaac > 2:264654‑M2/1‑38 (MQ=255) aGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcctaacagcagcgcgcgaagtgcggtaagtacct < 1:98136‑M2/149‑113 (MQ=255) ggCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagagcgcgaactgcggtaagtaacta < 2:38434‑M2/149‑114 (MQ=255) ggCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTCCCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaacaa > 2:317197/1‑149 (MQ=255) gCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacgggttcttgcggcttaacagcagcgcgcgaggtgctgtatgtaactgg < 1:169215‑M2/149‑115 (MQ=255) cGGAACCGGGACACCAACA‑GGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgt < 1:483159‑M2/149‑119 (MQ=255) gAACCGGGACACCAACA‑GGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgc > 2:477408‑M2/1‑29 (MQ=255) gggACACCACAA‑GGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccc < 2:300858‑M2/149‑126 (MQ=255) aaCA‑GGTAATGCAGATccttcgcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctcca > 1:501566‑M2/1‑16 (MQ=255) aaCA‑GCTAATGCAGCGccttcgcccaaacccaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctcca > 1:294041‑M2/1‑16 (MQ=255) aCA‑GGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAGCAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTAc > 1:65668/1‑149 (MQ=255) tAATGCAGAGccttctcgcaacccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctgg > 2:405782‑M2/1‑10 (MQ=255) tAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactgctcgtgccgccccttctccaggctgg < 1:244846‑M2/149‑140 (MQ=255) gagccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccgga > 2:805479‑M2/1‑3 (MQ=255) | CACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACA‑GGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGC > NC_000913_3_bme_pgi/1209454‑1209748 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |