New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	2635831 =	32 (1.060)	3 (0.110)	3/262	4.2	9.2%	intergenic (‑17/+53)	yfgJ/der	DUF1407 family protein/GTPase; multicopy suppressor of ftsJ
	?	NC_000913_3_bme_pgi	2635863 =	30 (1.090)					intergenic (‑49/+21)	yfgJ/der	DUF1407 family protein/GTPase; multicopy suppressor of ftsJ
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACACCTGCAACGGTTGATGGCAGTCTGGACAAAGAGCTTTCATTTCAATAAATTCCCCGCAGGATCGGCAACGCGCATGGCCGTTATCCTGATCAAGCACATGCTGACATTG‑TGGACAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTGGGTTGGCGTCAGGGTGTTACGCTTATTCGCATACGGG  >  NC_000913_3_bme_pgi/2635685‑2635971                                                                                                                                                    |                                                                                                                                             acacCTGCAACGGTTGATGGCAGTCTGGACAAAGAGCTTTCATTTCAATAAATTCCCCGCAGGATCGGCAACGCGCATGGCCGTTATCCTGATCAAGCACATGCTGACATTG‑TGGACACAGCCGTACCATTTAAATTCCTCCGGTAGcc                                                                                                                                            >  2:404525/1‑149 (MQ=255)         aaCGGTTGATGGCAGTCTGGACAAAGAGCTTTCATTTCAATAAATTCCCCGCAGGATCGGCAACGCGCATGGCCGTTATCCTGATCAAGCACATGCTGACATTG‑TGGACAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCctc                                                                                                                                    <  2:364910/149‑1 (MQ=255)          aCGGTTGATGGGAGTCTGGACAAAGAGCTTTCATTTCAATAAATTCCCCGCAGGATCGGCAACGCGCATGGCCGTTATCCTGACCAAGCACATGCTG‑CACTGACGTTGTAGGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCctct                                                                                                                                   <  1:260783/149‑1 (MQ=255)                        tCTGGACAAAGAGCTTTCATTTCAATAAATTCCCCGCAGGATCGGCAACGCGCATGGCCGTTATCCTGATCAAGCACATGCTGACATTG‑TGGACAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCCTAGAggg                                                                                                                     >  2:427449/1‑149 (MQ=255)                                 agagCTTTCATTTCAATAAATTCCCCGCAGGATCGGCAACGCGCATGGCCGTTATCCTGATCAAGCACATGCTGACATTG‑TGGACAATGCAGTGCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGa                                                                                                            <  1:18090/149‑1 (MQ=255)                                                         ccGCAGGATCGGCAACGCGCATGGCCGTTATCCTGATCAAGCACATGCTGACATTG‑TGGACAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCAACATAAATAGAGGGAATGGCAGATAAAATACTTACGGATAAttattt                                                                                    >  1:502582/1‑149 (MQ=255)                                                               gATCGGCAACGCGCATGGCCGTTATCCTGATCAAGCACATGCTGCAATTG‑TGGACAATGAAGATCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTAttttt                                                                              >  1:345322/1‑149 (MQ=255)                                                                aTCGGCAACGCGCATGGCCGTTATCCTGATCAAGCACATGCTGACATTG‑TGGACAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTc                                                                             <  1:168131/149‑1 (MQ=255)                                                                     cAACGCGCATGGCCGTTATCCTGATCAAGCACATGCTGACATTG‑TGGACAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGAt                                                                        <  1:404525/149‑1 (MQ=255)                                                                           gcATGGCCGTTATCCTGATCAAGCACATGCTGACATTG‑TGGACAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCtt                                                                  >  1:235008/1‑149 (MQ=255)                                                                                gCCGTTATCCTGATCAAGCACATGCTGACATTG‑TGGACAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATTTGCTtcatca                                                             >  2:231664/1‑149 (MQ=255)                                                                                         cTGATCAAGCACATGCTGACATTG‑TGGACAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGAc                                                          >  2:481686/1‑143 (MQ=255)                                                                                         cTGATCAAGCACATGCTGACATTG‑TGGACAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGAc                                                          <  1:481686/143‑1 (MQ=255)                                                                                           gATCAAGCACATGCTGACATTG‑TGGACAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGt                                                  >  2:534835/1‑149 (MQ=255)                                                                                            aTCAAGCACATGCTGACATTG‑TGGACAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTAGGGAGAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGtt                                                 >  1:310369/1‑149 (MQ=255)                                                                                               aaccacaTGTTGACATGT‑CGGACCATGCTGTTACATATGAATTCCTCCGTTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGTTGTGCTTCATCAGACGCTTACGTTTAc                                              <  2:265445/146‑1 (MQ=255)                                                                                                       gCTGACATTG‑GGTACAATGCAGTTCCAAATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCATATAAAAGACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTgg                                      <  1:256937/149‑1 (MQ=255)                                                                                                        cTGACATTA‑TGGAAAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTggg                                     <  1:475548/149‑1 (MQ=255)                                                                                                          gACATTG‑TGGACAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTGGGtt                                   >  1:85051/1‑149 (MQ=255)                                                                                                           accttG‑TGGACAATTCAGTTCCATATTAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAGAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTGGGTTg                                  <  1:343184/146‑1 (MQ=255)                                                                                                                   ggACAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTGGGTTGGCGTCAg                           <  1:127190/149‑1 (MQ=255)                                                                                                                   ggACAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTGGGTTGGCGTCAg                           <  2:217119/149‑1 (MQ=255)                                                                                                                    gACAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTGGGTTGGCGTCAgg                          <  1:276906/149‑1 (MQ=255)                                                                                                                    gACAATGCAGTTCCACATGAACTCCTCCGGTAGCCATTTCATATACCCTGATAGAGTGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTGGGTTGGCGTCAgg                          <  1:206558/149‑1 (MQ=255)                                                                                                                            aGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTAc                                              <  1:83043/121‑1 (MQ=255)                                                                                                                            aGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTAc                                              >  2:83043/1‑121 (MQ=255)                                                                                                                             gTTCCATATGAATTCCCCCGGTAGCCATTCCCTCGACATTCATAGAGGGAATGGCAGATATATTACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTGGGTTGGCGTCAGGGTGTTACGc                 <  2:86362/149‑1 (MQ=255)                                                                                                                                   tatGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTGGGTTGGCGTCAGGGTGTTACGCTTATTc           >  1:116297/1‑149 (MQ=255)                                                                                                                                    atGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTGGGTTGGCGTCAGGGTGTTACGCTTATTCg          >  2:120581/1‑149 (MQ=255)                                                                                                                                      gAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACGTACGGATAAATATTTATTTTTCTTGATTTGCTTCTTCAGACCCTAACGTTTCCGCATCTGGCTTGGCGTCAGGGTGTTACGCTTATTccac        >  2:38786/1‑146 (MQ=255)                                                                                                                                        aTTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTGGGTTGGCGTCAGGGTGTTACGCTTATTCGCATa      >  1:74309/1‑149 (MQ=255)                                                                                                                                            ctccGGTCGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTAGGTTGGCGTCAGGGTGTTTCGCTTATTCGCATACgag  >  1:496932/1‑147 (MQ=255)                                                                                                                                                    |                                                                                                                                             ACACCTGCAACGGTTGATGGCAGTCTGGACAAAGAGCTTTCATTTCAATAAATTCCCCGCAGGATCGGCAACGCGCATGGCCGTTATCCTGATCAAGCACATGCTGACATTG‑TGGACAATGCAGTTCCATATGAATTCCTCCGGTAGCCATTCCCTCTACATTCATAGAGGGAATGGCAGATAAAATACTTACGGATAATTATTTATTTTTCTTGATGTGCTTCATCAGACGCTTACGTTTACGCATCTGGGTTGGCGTCAGGGTGTTACGCTTATTCGCATACGGG  >  NC_000913_3_bme_pgi/2635685‑2635971

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.