New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	2304480 =	26 (0.560)	5 (0.110)	5/262	NT	18.2%	noncoding (64/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
	?	NC_000913_3_bme_pgi	2304946 =	20 (0.450)					noncoding (530/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences

TGTGAAGTACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACC‑GCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCT  >  NC_000913_3_bme_pgi/2304336‑2304625                                                                                                                                                 |                                                                                                                                                   tgtgAAGTACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGc                                                                                                                                                >  2:736192/1‑149 (MQ=255)    gAAGTACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTgg                                                                                                                                             <  1:581934/149‑1 (MQ=255)                 tGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATccg                                                                                                                                >  1:527562/1‑147 (MQ=255)                   gAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGGCGGATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAgca                                                                                                                              <  1:607576/149‑3 (MQ=255)                          gAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAcc                                                                                                                       >  2:750199/1‑149 (MQ=255)                             gagaAAATTGACAACGCGGTAGTGCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCGGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACC‑GCt                                                                                                                   <  2:50214/149‑1 (MQ=255)                                  aaTTGACAACGCGTTAGTTCGCTAAACTGCCGTGAAGTGCGGAACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACC‑GCTGTGaa                                                                                                              <  1:754768/149‑1 (MQ=255)                                    ttGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACC‑GCTGTGaact                                                                                                            >  1:406379/1‑147 (MQ=255)                                      gACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACC‑GCTGTGAAGTGc                                                                                                          <  1:3842/149‑1 (MQ=255)                                           gtcgcatcaggcaaccggctcgggcgttagatgttggatgcggcgtaaccgccttatccaacctacggggtggagcacttcacagcggtgtaggcctgatgcGACGCTGGCGCGTc                                                                                                                                       <  2:752620‑M1/14‑1 (MQ=255)                                           gtcgcatcaggcaaccggctcgggcgttagatgttggatgcggcgtaaccgccttatccaacctacggggtggagcacttcacagcggtgtaggcctgatgcGACGCTGGCGCGTc                                                                                                                                       >  1:752620‑M1/103‑116 (MQ=255)                                                  gTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACC‑GCTGTGAAGTGCGGCACCCCGTAg                                                                                              <  1:599002/149‑1 (MQ=255)                                                   ttCGCTAACCTGCCATGAAGGGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACC‑GCTGTGAAGTGCGGCACCCCGTAgg                                                                                             <  2:28029/149‑1 (MQ=255)                                                            tgtccGTGAAGTGCGTCACCCCGTAGGTCAGATAAGGCGGTCACGCCGCATCCGTCATCCAACGCCCGAGCCGGTGGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACC‑GCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAg                                                                                    <  1:283993/146‑1 (MQ=14)                                                            cTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACC‑GCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAg                                                                                    <  1:750199/149‑1 (MQ=255)                                                              gCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTATTATCAGGCCTACACC‑GCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGc                                                                                  <  1:253547/149‑1 (MQ=255)                                                                        gCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACC‑GCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCAcgccg                                                                        <  1:334664/149‑1 (MQ=255)                                                                              ccccGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACC‑GCTGTGAAGTGCGCCACCCCGTAGGTCGGACACGGCGGTCACACCGCATCCg                                                                  >  1:87055/1‑149 (MQ=255)                                                                                        cAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACC‑GCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACg                                                        <  1:875468/149‑1 (MQ=255)                                                                                         aGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACC‑GCTGTGAAGTGCGGCACCCCGTAGGTCGGACAAGGCGGTCACGCCGCATCCGACATCCAACGc                                                       >  1:466550/1‑149 (MQ=255)                                                                                          gACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACC‑GCTGTGAAGTGCGGCACCCCGTGGGTCAGACAAGGCGGGCACGCCGCATCCGACATCCCACGcc                                                      >  1:490029/1‑149 (MQ=255)                                                                                                ttatccaacctacggggtggagcacttcacagcggtgtaggcctgataaGACGCTGGCGCGTCTTATCAg                                                                                                                                <  1:334444‑M1/21‑1 (MQ=255)                                                                                                ttatccaacctacggggtggagcacttcacagcggtgtaggcctgataaGACGCTGGCGCGTCTTATCAg                                                                                                                                >  2:334444‑M1/50‑70 (MQ=255)                                                                                                  ggTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTGATCAGGCGTAGAAA‑ATGTTGAAGTGCGGCCCCCCGTGGGACAGACAAGGCGCTCACGCCGGATCCGACATCCAACGCCCGACCCgg                                              >  1:887089/1‑149 (MQ=14)                                                                                                                 gACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACC‑GCTGTGAAGTGCGCCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACg                               >  1:530225/1‑149 (MQ=255)                                                                                                                             ccGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACC‑GCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGTCGGTCACGCCGCCTCCCACATCCAACGCCCGAGCCGGCTGCCTGACGCGACGCCGCCGCGTCtt                   >  2:124909/1‑149 (MQ=14)                                                                                                                               gAGCCGGTTGCGTGAGGGCACGCTGGCGCGACTTATCAGGCCT‑CACCTGCCGTGAAGTGCAGCACCCCGTAGATCAGACAAGGCGGTCACGCTGCATCCGACAGCCAACGCCCTAGCCGGTGGCCTGATGCGACGCTGGCGCGTCTTAt                 <  2:400894/149‑1 (MQ=14)                                                                                                                               gAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACC‑GCTGTGACGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGACTGCGGCGCCGCTGGCTCGTCTAAt                 >  1:857544/1‑149 (MQ=14)                                                                                                                                   cGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACC‑GCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGATTGCCTGGTGCGACGCTGGCGCGTGTTATCggg             >  2:240185/1‑149 (MQ=255)                                                                                                                                   aggTTGCGGGATGCAACGCTGGCGCGTCTGTTCAGGCCTAAACC‑GCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg             <  2:549153/148‑1 (MQ=17)                                                                                                                                     gTTGCCTGATGCGACGCTGGCGGGTCTTATCAGGCCTACACC‑GCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGcc           <  1:419385/149‑1 (MQ=255)                                                                                                                                       tgccgaaTGCGACGCTGGCGCGTCCGATCAGGCCTACACC‑GCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACAGCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTa         <  1:575029/143‑1 (MQ=17)                                                                                                                                         cctgataaGACGCGCCAGCGTCTTATCAGGCCTACACC‑GCTGTGAAGTGCGGCACCCCGTAGGTTAGACAAGGCGGTCACCCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGTGGCGGGCGCGTcttatcagcgcaagc       <  2:629662‑M1/141‑8 (MQ=255)                                                                                                                                              cgCGACGCTGGCTCGTCTGAACAGCCCTACACC‑GCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGTCGCATCCGACATCCAAGGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCt  <  2:307966/148‑1 (MQ=14)                                                                                                                                                 |                                                                                                                                                   TGTGAAGTACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACC‑GCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCT  >  NC_000913_3_bme_pgi/2304336‑2304625

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.