New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	2279413 =	41 (0.880)	3 (0.070)	3/260	NT	7.2%	coding (348/1191 nt)	bcr	bicyclomycin/cysteine/sulfonamide efflux transporter
	?	NC_000913_3_bme_pgi	2279435 =	38 (0.850)					coding (326/1191 nt)	bcr	bicyclomycin/cysteine/sulfonamide efflux transporter

CAGCACCCAGCCGCCAACTATCGGTGCCATCAGCGGTGCAATGGTTGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGC‑ACACGCCACCGCGGCGGCGGCAAACACCAGCGTACCGCCGAGCACCACCGGCTTACGCCCGAAGCTGTCTGCCATCGGCCCGTAGATTAACTGCCC  >  NC_000913_3_bme_pgi/2279287‑2279580                                                                                                                                                     |                                                                                                                                                   cAGCACTCAGCCGCCAACGATCGGTGCCATCAGCGGTGCAATGGTTGTCACCGGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTAAATATCTCGCATCACGGCGTAAATAACCACGCTGGCCCCAGCCCCagccagcc                                                                                                                                                    >  2:342999/1‑149 (MQ=255)       aggcagcttcgggtgtaagccggtggtgctcggcggtacgctggtgtttgccgccgccgcggtggcgtgtgcgttggcaaacaccatcgatcagctgattgtgatgcgtttcttccacggGCTGGCCGCAGCCGCAGCCAGCCCGTGga                                                                                                                                              >  1:369116‑M1/121‑149 (MQ=255)                aaCTATCGGTGCCATCAGCGGTGCAATGGTTGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCa                                                                                                                                     <  2:473188/149‑1 (MQ=255)                        gTGCCATCAGCGGTGCAATGGTTGTCACCAGCATGACACACGACATCATCCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGAACATGCAGTCAGCAGACAAAGCCATCCCTTACAAGAAACGCATCACAATc                                                                                                                             >  1:165625/1‑149 (MQ=255)                           ccATCAGCGGTGCAATGGTTGTCACAAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGc                                                                                                                          >  2:644556/1‑149 (MQ=255)                                    gTGCAATGGTGGTCACCAGCATGACAAACGACATCAACCTCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCCGCCGCAGCCCGCCCGACTAACTAACGCATCACAATCAGCTGATCGATg                                                                                                                 <  1:891799/149‑1 (MQ=255)                                       cAATGGTTGTAACAAACATTAGGAACGACATCATCCGCGAAAACTCTTCTTTCGGGAAAATAAAGCGCATCAGGGCGTTAATGACCAAGCTAGCCGCAGCCGCAGCCAGACCGTGGAACAAACTCAACACAATACACTGATCCATGgtt                                                                                                              >  2:554834/1‑148 (MQ=255)                                         aTGGTTGGCACCAGCATGACAAACGACATCATTCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGtt                                                                                                            <  1:278427/149‑1 (MQ=255)                                            gTTGTCACCAGCATGACACACGACATCATCCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGTGCGTTAATGAACACGCTGGCCGCAGCCGCAGCCAGCGCGTGGAAGAAACGCATCGCAATCAGCTGATCGATGGTGTTTGc                                                                                                         <  1:683410/149‑1 (MQ=255)                                             ttGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGcc                                                                                                        >  1:784302/1‑149 (MQ=255)                                                tCACCAGCATGACAAACGACATTATCCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAAc                                                                                                     <  1:110297/149‑1 (MQ=255)                                                   ccAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTTGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGc‑a                                                                                                 <  1:606385/149‑1 (MQ=255)                                                      gCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTAAATATAGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCAGAAGCCAGCCCGTGGAAGCAACGCCTACCAATCAGCTAATCCACCGTGTTAGCCAAccaccca                                                                                               >  2:702092/1‑143 (MQ=255)                                                         tGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGGATACCTCCCGTGGAAGAAACGCATCACAATCAACTGATCGATTATGTTTGGCAACGC‑AAACGcc                                                                                           >  1:206685/1‑149 (MQ=255)                                                            cAAACGACAGCATCCGCGAGAACTCTTCTTTCGGGTAAATATTGCGCATGAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATTGTGTTTGACAACGC‑GGCCGCCAcc                                                                                        <  2:636959/149‑1 (MQ=255)                                                                 gACATCATCCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAACCAGCCCGTGGAAGAAACACATCACAATCAGCTGATCGATGGTGTTTGCCAACGC‑ACACGCCACCgcggc                                                                                   >  1:381044/1‑149 (MQ=255)                                                                 gACATCATCCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCATTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGA‑ACACGCCACCgcggc                                                                                   >  1:687791/1‑149 (MQ=255)                                                                   catcatCCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGC‑ACACGCCACCgcggcgg                                                                                 <  1:644556/149‑1 (MQ=255)                                                                    atcatcCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGC‑ACACGCCACCgcggcggc                                                                                >  1:686100/1‑149 (MQ=255)                                                                        tcCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGC‑ACACCCCACCGcggcggcggaa                                                                            >  2:749333/1‑147 (MQ=255)                                                                          cgcgAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGAACGATGGTGTTTGCCAACGC‑ACACGCCGCCgcggt                                                                                   <  2:712720/140‑2 (MQ=255)                                                                          cgcgAGAACTCTTCTTTCGGGTAAATATCGCGAATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGC‑ACACGCCGCCgcggt                                                                                   >  1:712720/1‑139 (MQ=255)                                                                                 aCTCTTTTTTCGGGTAATTATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGC‑ACACGCCACCGCGGCGGCGGCAAACACCAGc                                                                   <  1:402515/149‑1 (MQ=255)                                                                                   tcttctTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGC‑ACACGCCACCGCGGCGGCGGCAAACACCAGCGt                                                                 >  1:514467/1‑149 (MQ=255)                                                                                    cttcttTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGC‑ACACGCCACCGCGGCGGCGGCAAACACCAGCGTa                                                                <  2:852200/149‑1 (MQ=255)                                                                                     ttcttTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAATAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGC‑ACACGCCACCGCGGCGGCGGCAAACACCAGCGTAc                                                               >  1:33958/1‑149 (MQ=255)                                                                                     ttcttTCGGGCAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCAAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGC‑ACACACCACCGCCGCCGCGGCCAACAACAGCGTAc                                                               >  2:63767/1‑149 (MQ=255)                                                                                      aacaccatcgatcagctgattgtgatgcgtttcttccacggGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAAc                                                                                                                                        <  2:180320‑M1/35‑1 (MQ=255)                                                                                      aacaccatcgatcagctgattgtgatgcgtttcttccacggGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAAc                                                                                                                                        >  1:180320‑M1/42‑76 (MQ=255)                                                                                        tttCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGC‑ACACGCCACCGCGGCGGCGGCAAAAACCAGCGTAccgc                                                            >  1:267507/1‑149 (MQ=255)                                                                                             ggTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGC‑ACACGCCACCGCGGCGGCGGCAAACACCAGCGTACCGCCGAGc                                                       >  2:459153/1‑149 (MQ=255)                                                                                             ggTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGCGTTTGCCAACGC‑ACACCCCACCGCGTAGGCGGCAAACACAAGCGTACCGCCGAGc                                                       >  1:387850/1‑149 (MQ=255)                                                                                                  atatCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCCGCCGCAGAAAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATTGTGTTTGCCAACAC‑ACACGCCCCCGCGGCGGCGGCAAACACCAGCCTCCCGCCGaccacccg                                                  >  2:860492/1‑147 (MQ=255)                                                                                                   tatCGCGCATCAGGGCGTTAATGACCACGCAGGACCAAGATGACACTACCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGC‑ACACGCCACCGCGGCGGCGGCAAATATTAGCGTACAGCCGGGCaccacc                                                 <  2:636715/149‑1 (MQ=255)                                                                                                     tCGCGCATCAGAGCGTTAATGACCACTATGGGCGCCGCCGCCGCCAACCCGTGGAAGAAACGCATCACAAACCGCTGATCAATGGTTTTTGCCAACGC‑AAACGCCACCGCGGCGGCGGCCAACACCAGCGTCCCGCCGAGCacgacccg                                               >  2:61500/1‑147 (MQ=255)                                                                                                      cgccCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTTCCAACGC‑ACACGCCACCGCGGCGGCGGCAAACACCAGCGTACCGCCGAGCACCACCGGc                                              <  1:553647/149‑1 (MQ=255)                                                                                                       gcgcATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAACTGATCGATGGTGTTTGCCAACGC‑ACAAGCCACCGCGGCGGCGGCAAAGACCAGCGTACCGCCGAGAACCACCGGCt                                             >  1:694563/1‑149 (MQ=255)                                                                                                        cgcATCAGGGCGTTAATGACCACGCTGGACGCAGCACCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGC‑ACACGCCACCGCGGCGGCGGCAAACACCAGCGTACCGCCGAGCACCACCGGCtt                                            <  1:841228/149‑1 (MQ=255)                                                                                                                  gtttcttccacgggctggctgcggctgcggccagcCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGtt                                                                                                            <  2:180320‑M2/41‑1 (MQ=255)                                                                                                                  gtttcttccacgggctggctgcggctgcggccagcCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGtt                                                                                                            >  1:180320‑M2/36‑76 (MQ=255)                                                                                                                   gTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGC‑ACACGCCACCGCGGGGGCGGCCAACACCAGCGTACCGCCGAGCACCACCGGCTTACGCCCGAAGc                                 >  2:560426/1‑149 (MQ=255)                                                                                                                   gTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGC‑ACACGCCACCGCGGCGGCGGCAAAAACCAGAGTAACGCCGAGCACCACCGGATTAGGCCCGAAGc                                 >  1:412158/1‑149 (MQ=255)                                                                                                                        tccacgggctggctgcggctgcggccagcCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGC‑ACACGCCACCGCGGCGGCGGCAAACACCAGCGTACCGCCGAGCACCACCGGCTTACACCCGAAGCTGCCt                            >  1:369116‑M2/30‑149 (MQ=255)                                                                                                                        tGACCACGCTGGCCGCAGCCGAAGCCAGCCCGTGGAAGAAACGAATCACAATCAGCTGATCGATGGTGTTTGCCAACGC‑ACACGCCACCGCGGCGGCGGCAAACACCAGCGTACCGCCGAGCACCACCGGCTTACGCCCGAAGCTGTCt                            <  1:352018/149‑1 (MQ=255)                                                                                                                                  GGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCATAATCAGCTGATCGATGGTGTTTGCCAACGC‑ACACGCCACCGCGGCGGCGGCAAACACCAGCGTACCGCCGAGCACCACCGGCTTACGCCCGAAGCTGTCTGCCATCGGcc                  >  1:303051‑M1/1‑149 (MQ=255)                                                                                                                                     tgcagccgcagccAGCCCGTGGAAGAAACGCATCACAATCAGCTAATCGATGGTGTTTGCCAACGC‑ACACGCCACCGCGGCGGCGGCAAACACCAGCGTACCGCCGAGCACCACCGGCTTACGCCCGAAGCTGTCTGCCATCGGCCCga               >  2:804438/2‑148 (MQ=255)                                                                                                                                            gcagccCGCCTGTGAAAGAAACGCATCACAGTCGGCTGATCGATGGTGTTTGCCAACGC‑ACACGCCACCGCGGCGTCGGCAAACACCAGTGTACCGCCGAGCACCACCGGCTTACGCCGGAAGCTGTCTGCCATCGGTCCGTTGATGaa        <  2:890158/149‑1 (MQ=255)                                                                                                                                                  agccGGTGGAAGAAACGCATCACAATCCGTGTACAGATAGTGTTT‑CCGGGGCGGCGCGCCAGCGCGGCGGCGGCAAACACCAGCGCACCGCCGAGCACCACCGGCTTACGCCCGAAGCTGTCTGCCATCGGCCCGTAGATTAACTGccc  <  2:542124/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CAGCACCCAGCCGCCAACTATCGGTGCCATCAGCGGTGCAATGGTTGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGC‑ACACGCCACCGCGGCGGCGGCAAACACCAGCGTACCGCCGAGCACCACCGGCTTACGCCCGAAGCTGTCTGCCATCGGCCCGTAGATTAACTGCCC  >  NC_000913_3_bme_pgi/2279287‑2279580

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.