New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 20563	NA (NA)	47 (0.850)	38/286	0.5	94.0%	intergenic (‑55/+252)	insA/rpsT	IS1 repressor TnpA/30S ribosomal subunit protein S20
	?	NC_000913_3_bme_pgi	= 61489	3 (0.050)					coding (1776/2907 nt)	rapA	RNA polymerase remodeling/recycling factor ATPase; RNA polymerase‑associated, ATP‑dependent RNA translocase

AGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATTGAGTAGATATTCTTGTTCAGAATGTATCAGCCGATGGTTCTACGATTCTTAAGCCACGAAGAGTTCAGATAGTACAACGGCATGTCTCTTTTGA  >  NC_000913_3_bme_pgi/20417‑20710                                                                                                                                                   |                                                                                                                                                      agaTAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCaccta                                                                                                                                                     <  1:586880/149‑1 (MQ=11)    tAGCGCTGATGTCCGGCGGTGCTGTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAACCAGAACCCCCTCGAGCACCTTAAAAACACCATCATCCACTAAATCAGTAAGTTGGCAGCATCacctacct                                                                                                                                                  <  2:763409/149‑1 (MQ=11)        gcggATGTCCGGCGGTGCTTTTGTCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACTTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAAt                                                                                                                                              <  1:171853/146‑1 (MQ=255)        gcTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCCAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAAt                                                                                                                                              >  1:48909/1‑149 (MQ=25)             tGTCCGGTGGTGCTTTTGCCGTTACGCACCACCACGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTa                                                                                                                                         <  1:822852/149‑1 (MQ=255)              tgccgtgggTGCTTTTGCCGTTACGCATCACCACGGCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTAt                                                                                                                                        <  2:898301/142‑1 (MQ=14)              gTCCGGGGGTGCATTTGACGTTATGCACCCCCCCTTTTGTTGTTCAAACGACGAGACAGCTGATAGAAACAGTAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTAt                                                                                                                                        <  1:229843/149‑1 (MQ=14)                ccGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATca                                                                                                                                      <  2:566377/149‑1 (MQ=255)                 cggcggTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATcac                                                                                                                                     >  2:409062/1‑149 (MQ=255)                       tgtctttGCCGCTAACCACCACCCCGTCAGTATCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCACAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATc                                                                                                                               <  2:236656/145‑1 (MQ=17)                       tGCCTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATc                                                                                                                               <  1:578002/149‑1 (MQ=255)                          ttttGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCat                                                                                                                            >  1:470740/1‑149 (MQ=255)                                     cccacaacCCCCTCAGGAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGGCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCCTCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTgg                                                                                                                <  2:9592/147‑1 (MQ=17)                                     cGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATCCACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTgg                                                                                                                <  2:802449/149‑1 (MQ=255)                                     cGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTgg                                                                                                                <  1:409062/149‑1 (MQ=255)                                      gCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTggg                                                                                                               <  1:250254/149‑1 (MQ=255)                                         ccaccCCGTCAGTAGCGGAACAGGAGTGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTACATCCGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGa                                                                                                           <  1:214181/149‑1 (MQ=255)                                          caccCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGAAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTCTCACAATATCCATATT‑GTTTGTGGG‑GGAg                                                                                                          >  2:765892/1‑149 (MQ=255)                                           accCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAGACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGt                                                                                                         >  1:874954/1‑149 (MQ=255)                                              ccGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTTGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTg                                                                                                      >  1:521720/1‑149 (MQ=255)                                               cggaggTAGCGGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCGCCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCGCGATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTgg                                                                                                     <  2:28694/144‑1 (MQ=18)                                                      aGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATTGa                                                                                              <  1:313130/149‑1 (MQ=255)                                                       gCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATTGAg                                                                                             <  1:53317/149‑1 (MQ=255)                                                           aaCAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGACTGGCGATTGAGTAGa                                                                                         >  2:383743/1‑149 (MQ=255)                                                             cAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCCCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATTGAGTAGata                                                                                       <  2:499740/149‑1 (MQ=255)                                                              aggaggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATTGAGTAGatat                                                                                      >  1:670562/1‑149 (MQ=255)                                                                    gACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATTGAGTAGATATTCTTGt                                                                                <  2:732328/149‑1 (MQ=255)                                                                     aCAGCTGATAGCCACACAATCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATCTCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATGTCGTAGATTTTCTTGtt                                                                               >  2:374645/1‑149 (MQ=21)                                                                     aCAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATTGAGTAGATATTCTTGtt                                                                               >  1:927951/1‑149 (MQ=255)                                                                     aCAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATTGAGTAGATATTCTTGtt                                                                               >  1:257966/1‑149 (MQ=255)                                                                     aCAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATTGAGTAGATATTCTTGtt                                                                               <  1:411764/149‑1 (MQ=255)                                                                       aGCTGATAGGAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATTGAGTAGATATTCTTGTTCa                                                                             <  2:47073/149‑1 (MQ=255)                                                                         cTGATAGAAAAATAAGCCACTGGAGCACTTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATTGAGTAGATATTCTTGTTCAGa                                                                           <  2:294389/149‑1 (MQ=255)                                                                          tGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATTGAGTAGATATTCTTGTTCAGaa                                                                          <  2:894990/149‑1 (MQ=255)                                                                           gATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCATCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATTGAGTAGATATTCTTGTTCAGAAt                                                                         <  1:167683/149‑1 (MQ=255)                                                                               gAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATAT‑CAAAAA‑CGCCGTGGGTGGAGTCTGGAGATTGAGTAGATATTCTTGTTCAGAATGTAt                                                                     >  1:735753/1‑149 (MQ=21)                                                                               gAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCACAATAAGTATCACAATAT‑CATGTTGCCCAGTGGG‑GGAGTCTGGAGATTGAGTAGATATTCTGGTTCAGAATGTAt                                                                     >  1:945918/1‑149 (MQ=18)                                                                                 aaCAGAAGCCACTGGCGCACCTCAAAAACACCGTCATACACTAAACAAGTAAGTTGGCAGCATCCCATACCTCAGTGTGTATCACAATATCCATCTT‑CTCTGTAGC‑GGCGTCAGCAGATTGCGTAGCAATTCTTGTTCAGAATGTATCa                                                                   >  2:203224/1‑149 (MQ=255)                                                                                  aCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATTGAGTAGATATTCTTGTTCAGAATGTATCAg                                                                  >  1:750315/1‑149 (MQ=255)                                                                                        gCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATTGAGTAGATATTCTTGTTCAGAATGTACCAGCCgtag                                                            >  2:203363/1‑146 (MQ=255)                                                                                               gAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCCGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCGGGAGATTGCGTAGATATTCTTGTTCAGAATGTGTCAGCCGATGGTTCtcc                                                     >  2:670256/1‑147 (MQ=255)                                                                                                 gCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCACATT‑CTTTGTGGG‑GGAGTCTGGAGATTGAGTAGATATTCTTGTTCAGAATGTATCAGCCGATGGTTCTACGa                                                   <  2:349000/149‑1 (MQ=255)                                                                                                   aCCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTTGG‑GGAGTTTGGAGATTGAGTAGATATTCGTGTTCAGAATGTATCAGCCGATGGTTCTACGAtt                                                 >  1:896212/1‑149 (MQ=255)                                                                                                   aCCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATTGAGTAGATATTCTTGTTCAGAATGTATCAGCCGATGGTTCTACGAtt                                                 <  1:271001/149‑1 (MQ=255)                                                                                                      tCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATTGAGTAGATATTCTTGTTCAGAATGTATCAGCCGATGGTTCTACAATTCtt                                              >  1:913134/1‑149 (MQ=255)                                                                                                      tCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATTGAGTAGATATTCTAGTTCAGAATGTATCAGCCGAAGGTTCTACGATTCtt                                              >  1:263924/1‑149 (MQ=255)                                                                                                        aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATTGAGTAGATATTCTTGTTCAGAATGTATCAGCCGATGGTTCTACGATTCTTaa                                            >  2:673609/1‑149 (MQ=255)                                                                                                        aaaaaCACCATCATACACTAAAACAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATTGAGTAGATATTCTTGTTCAGAATGTATCAGCCGATGGTTCTACGATTCTTaa                                            <  1:353181/149‑1 (MQ=255)                                                                                                           aaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGGTTGAGTAGATATTCTTGTTCAGAGTGTATCAGCCGATGGTTCTACGATTCTTAAGcc                                         >  2:633322/1‑149 (MQ=255)                                                                                                                catcatACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATTGAGTAGATATTCTTGTTCAGAATGTATCAGCCGATGGTTCTACGATTCTTAAGCCACGaa                                    >  2:773031/1‑149 (MQ=255)                                                                                                                  accaacacTAAACCAGAAAGGTGGCCGCATCACCTCGCTCAATCTATATCACAATATCCATATT‑CTTTGTGGG‑GGCGTCTGGAGATTGAGTAGATATTCTTGTTCAGAACGTATCACCCGATGGTTCTACGATTCTTGAGGCACGAaga                                  <  2:908564/145‑1 (MQ=255)                                                                                                                     tACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATTGAGTAGATATTCTTGTTCAGAATGTATCAGCCGATGGTTCTCCGATCATTAAGCCACGAAgtgtc                               >  2:87607/1‑148 (MQ=255)                                                                                                                     tACACTAAATCAGTAAGTTGGCAGCATCACCTACATCAATGTGTATCCCAATATCCATATT‑CTTTGTGGG‑GGGGACTGGAGATTGAGTAGATATTCTTGTTCAGAATGTATCCGCCGATGGGTCTACGACTCTTAAGCCACGAAGAGtt                               >  2:80391/1‑149 (MQ=255)                                                                                                                      acacTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATTGAGTAGATATTCTTGTTCAGAATGTATCAGCCGATGGTTCTACGATTCTTAAGCCACGAAGAGTTc                              <  1:754578/149‑1 (MQ=255)                                                                                                                      acacTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATTGAGTAGATATTCTTGTTCAGAATGTATCAGCCGATGGTTCTACGATTCTTAAGCCACGAAGAGTTc                              >  2:752701/1‑149 (MQ=255)                                                                                                                        acTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATTATTAAAACCATATT‑CTTTTTGAG‑GAATTCTGGAGATTGAGTAGATATTCTTGTTCAGAATGTATCAGCCGATGGTTCTACGATTCTTAAGCCACGAAGAGTTCAg                            >  1:493299/1‑149 (MQ=255)                                                                                                                        acTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATGTCCATATT‑CGTGGTGGG‑GACGTCTGGAGATTGAGTAGATATTCTTGTTCAGAATGTATCAGCAGATGGTTCTACGATTCTTAAGTCACGAAGAGTTCAg                            >  2:4011/1‑149 (MQ=255)                                                                                                                        aacaaaTCGGTAAGTTGGCAGCATCACCTACTCCAATATGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGATATTGAGTAGATATTCTTGTTCAGAATGTATCAGCGGATGGTTCTACGATTCTTAAGCCACGAAGAGTCCAg                            <  2:931237/146‑1 (MQ=255)                                                                                                                          tAAATCCGTAAGTTGGCAGCATCACCGACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATTGAGTAGATATTCTTGTTCAGAATGTATCAGCCGATGGTTCTACGATTCTTAAGCCACGAAGAGTTCAGAt                          <  1:628009/149‑1 (MQ=255)                                                                                                                          tAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATTGAGTAGATATTCTTGTTCAGAATGTATCAGCCGATGGTTCTACGATTCTTAAGCCACGAAGAGTTCAGAt                          <  1:773031/149‑1 (MQ=255)                                                                                                                              tCAGTAAGTTTGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATTGAGTAGATATTCTTGTTCAGAATGTATCAGCCGATGGTTCTACGATTCTTAAGCCACGAAGAGTTCAGATAGTa                      <  2:521720/149‑1 (MQ=255)                                                                                                                                  tAAGGTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATTGAGTAGATATTCTTGTTCAGAATGTATCAGCCGATGGTTCTACGATTCTTAAGCCACGAAGAGTTCAGATAGTACAAc                  <  1:409059/149‑1 (MQ=255)                                                                                                                                      ttGGTAGTATCACCTACTTCAATTTGTAGCACAATATCCTTATT‑CTTCGTGGG‑GGAGTGTGGAGATTGAGTAGATATTCTTGTTCAGAATGTATCAGCCGATGGTTCTACGATTCTTAAGCCACGAAGAGTTCAGATAGTACAACGGCa              <  1:337208/149‑1 (MQ=255)                                                                                                                                      ttGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATTGAGTAGATATTCTTGTTCAGAATGTATCAGCCGATGGTTCTACGATTCTTAAGCCACGAAGAGTTCAGATAGTACAACGGcc              >  2:444940/1‑148 (MQ=255)                                                                                                                                                cACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATTGAGTAGATATTCTTGTTCAGAATGTATCAGCCGATGGTTCTACGATTCTTAAGCCACGAAGAGTTCAGATAGTACAACGGCATGTCTCtttt    <  1:18582/149‑1 (MQ=255)                                                                                                                                                 acctacctAAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑TGAGTCTGGAGATTGAGTAGATATTCTTGTTCAGAATGTATCAGCCGATGGTTCTACGATTCTTAAGCCACGAAGAGTTCAGATAGTACAACGGCATGTCTCTTTTg   <  2:690221/149‑1 (MQ=255)                                                                                                                                                  cctacctCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATTGAGTAGATATTCTTGTTCAGAATGTATCAGCCGATGGTTCTACGATTCTTAAGCCACGAAGAGTTCAGATAGTACAACGGCATGTCTCTTTTGa  >  1:162968/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                      AGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATT‑CTTTGTGGG‑GGAGTCTGGAGATTGAGTAGATATTCTTGTTCAGAATGTATCAGCCGATGGTTCTACGATTCTTAAGCCACGAAGAGTTCAGATAGTACAACGGCATGTCTCTTTTGA  >  NC_000913_3_bme_pgi/20417‑20710

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.