New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	1018972 =	51 (1.130)	5 (0.120)	5/268	5.6	9.9%	intergenic (+35/+41)	matP/ompA	Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d)
	?	NC_000913_3_bme_pgi	1018998 =	44 (1.050)					intergenic (+61/+15)	matP/ompA	Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAAACGATTGTTCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAGGCAGTCGATCAGTGCAGCACGCTGTTTCACGTTGTC  >  NC_000913_3_bme_pgi/1018833‑1019120                                                                                                                                             |                                                                                                                                                     gAAACGATTGTTCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCg                                                                                                                                             >  2:687829/1‑149 (MQ=255) gAAACGATTGTTCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCg                                                                                                                                             >  1:779671/1‑149 (MQ=255)  aaaCGATTGTTCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCgc                                                                                                                                            >  2:61952/1‑149 (MQ=255)    aCGATTGTTCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCGGTTAAATTTACTAAAGGC‑AAAAAAAACCCCgcag                                                                                                                                          >  1:172807/1‑149 (MQ=255)      gATTGTTCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAAATGACGAAAGTCAGTTCAATTTACTAAAGGC‑CAAAAAAACCCCgcagca                                                                                                                                        >  1:655427/1‑149 (MQ=255)       aTTGTTCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGACAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACACCGcagcag                                                                                                                                       >  2:194455/1‑149 (MQ=255)        ttGTTCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCagcagc                                                                                                                                      >  1:27712/1‑149 (MQ=255)          gTTCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCgg                                                                                                                                    <  1:801001/149‑1 (MQ=255)          gTTCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCgg                                                                                                                                    <  1:624077/149‑1 (MQ=255)           ttCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCggg                                                                                                                                   <  1:615326/149‑1 (MQ=255)              aacTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGtt                                                                                                                                <  1:301994/147‑1 (MQ=255)                  agctGAAGGTGCAGAAAACAAAAAAAAAAAATCAAAGAAAATGTCTCCCTTGAAGCAGGATCTGCAGGCATTGCTGGGCAAGGACTAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAACACCCCGCAGCAGCGGGGTTTTTc                                                                                                                            <  2:47371/146‑1 (MQ=255)                     tGAAGATGCGGAAAACAAAGAGAAATACGCGAATAGAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTAc                                                                                                                         <  2:213624/149‑1 (MQ=255)                              ggAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACgaga                                                                                                                >  2:699425/1‑149 (MQ=255)                               gAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGaa                                                                                                               <  1:498046/149‑1 (MQ=255)                                 aaaCACAGAGAAATGCGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGAAAGCATGGCTGGATAAGGAATATCTGACGAGAGGCAGTTCAAGTTAGTAAAGGC‑AAATAAACCACCTCTGCAGCGGAGTGTATCTAACAGACGaaaaat                                                                                                             >  2:449255/1‑147 (MQ=255)                                      aaGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGCACTTAAGc                                                                                                        >  1:704557/1‑149 (MQ=255)                                           aaaTACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCg                                                                                                   <  1:529364/149‑1 (MQ=255)                                                cgcgAATAAAATGTCTCCTCTTAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGa                                                                                              <  1:2658/149‑1 (MQ=255)                                                   gAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAACCTGCGGCTGAGtt                                                                                           >  1:145969/1‑149 (MQ=255)                                                    caTAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTGAAGGC‑AAAAAAAACTCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTa                                                                                          >  2:607441/2‑149 (MQ=255)                                                         aaTGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACACGCACTTAAGCCTCCGCCTCAGTCACAACg                                                                                     >  2:144632/1‑149 (MQ=255)                                                          aTGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACg                                                                                     >  1:196871/1‑149 (MQ=255)                                                            gTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCt                                                                                  >  1:592867/1‑149 (MQ=255)                                                               ttctCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGCGAACTTAAGCCTGCGGCTGAGTTACAAAGTCTTTg                                                                               >  1:235872/1‑149 (MQ=255)                                                                agtaagAAGCAGCATCTGAAGGCAGTGCTGGGTAAGGAATAACTGACGAAAGTAAGTTCAAAAAAAAAAAAAA‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGa                                                                              <  2:593789/144‑1 (MQ=255)                                                                   ctGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATAc                                                                           <  1:699425/149‑1 (MQ=255)                                                                   ctGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACACTGCATCATCGGGTTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATAc                                                                           <  1:351912/149‑1 (MQ=255)                                                                     gAAGCAGGATCTGTAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACTATGCGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCt                                                                         <  2:735439/149‑1 (MQ=255)                                                                       aGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCttt                                                                       >  1:249540/1‑149 (MQ=255)                                                                             aTCTGCAGGCATGGCTGGGAAAGGAATAACTGACGAAAGACAGCTCAAATTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCCGGGTTTCTCTACCAGCCGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACCTc                                                                 >  2:450508/1‑149 (MQ=255)                                                                               cTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGa                                                               <  2:592905/149‑1 (MQ=255)                                                                                   aGGCATTGCTGGGGAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCGGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCAGAGTTACAACGTCGTTGGTACCTTTAACTTCGAtgtt                                                           >  2:10476/1‑146 (MQ=255)                                                                                    ggCATTGCTGGTTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATctct                                                          <  1:61952/149‑1 (MQ=255)                                                                                        ttGCAGTGTAAGTAATAACGGACGAAGGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTGTCGACCAGCCGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTAcgc                                                      <  2:342126/149‑1 (MQ=255)                                                                                               gTAAGGAATAACTGACGAAAGGTAGTTCAATTTACTAACTGC‑CAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATc                                               <  2:507840/149‑1 (MQ=255)                                                                                                tAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGACACACAAACTACGTCCTCGGTACCTTTAACTTCGATCTCTACGCGACGATcc                                              >  2:84986/1‑149 (MQ=255)                                                                                                 aaGGAATAACTGACGAGATTAAGTTCACTTTACTAAAGGT‑AAAAAAAACCCCGCAGCTGCGGGGTTTTTCTACCAGACGAGAACTTAGGTCTGCACCGGAGTTATAATGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCg                                             <  2:291195/149‑1 (MQ=255)                                                                                                    gAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAg                                          >  1:564323/1‑149 (MQ=255)                                                                                                    gAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGAGACCTTTAACTTCGATCTCTACGCGACGATCCGGAg                                          >  1:395387/1‑149 (MQ=255)                                                                                                       tAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATATCTACGCGACGATCAGGAGCCa                                       >  1:198192/1‑149 (MQ=255)                                                                                                        aaCTGACGAAAGTCAGTTCAATTTACGAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTATAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAg                                      <  2:779671/149‑1 (MQ=255)                                                                                                             aCGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCCGCGGCGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCGTTAACTTCGCTCTCTACGCGACGATCCGGAGCCAGGCAGt                                 <  1:708836/149‑1 (MQ=255)                                                                                                               gAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAGGCAGTCg                               >  1:638284/1‑149 (MQ=255)                                                                                                                    tCAGTTCAATTTGCTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAAACGAGAACTTAAGCCTGCGGCTGAGTTAGAACGTCTTTGATACCTTTAACTTCGATCTCTAAGCGACGATCCGGAGCGACGCAGTCGATCaa                          >  1:321010/1‑148 (MQ=255)                                                                                                                                    aaGGC‑AAAAAAAACCCCGCAGCAGGGGGGTGTTTCTACCAGACGAGAACATAAGCCTGGGGCAGAGGTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCCGCGCCGCGCAGTCGATCCGTGCAGAACGCTGttgc          >  2:369411/1‑147 (MQ=255)                                                                                                                                    aaGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAGGCAGTCGATCAGTGCAGCCCCCTGTTTc          >  2:252344/1‑149 (MQ=255)                                                                                                                                       gcaaaaaaaaaCCCCGCATCAGCGGGGTTTTTCTACCAGTCGAGTACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGAAACCTTTAACTTCGATCTCTACGCGATGATCCGGAGCCAGGCAGCCGATCAGTGCAGCACGCTGTTTCAc        <  1:608134/146‑1 (MQ=255)                                                                                                                                       gC‑AAAAAAAACCCCGCAGCAGCGGGGCTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGCAGATCCGGCGCCAGGCCGTCGATCAGTGCAGCACGCTATTTCACg       >  2:122535/1‑149 (MQ=255)                                                                                                                                          caaaaaaaCCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAGGCAGTCGATCAGTGCAGCACGCTTTTTCACGtt     <  2:617993/148‑1 (MQ=255)                                                                                                                                          aaaaaaaaCCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCTGATCCAGGCAATCGATCAGTGCAGCACGCTATTTCACGtt     >  2:701366/1‑149 (MQ=255)                                                                                                                                             aaaaaCCCCGCTGCTGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGCCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGCCGATCCGCAGCCAGGCAGCCGACCAGTGCAGCACCCCGCTTCACGTtctc  >  2:229516/1‑149 (MQ=255)                                                                                                                                             |                                                                                                                                                     GAAACGATTGTTCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAACCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAGGCAGTCGATCAGTGCAGCACGCTGTTTCACGTTGTC  >  NC_000913_3_bme_pgi/1018833‑1019120

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.