New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	2068389 =	57 (1.260)	4 (0.100)	4/254	5.9	7.6%	pseudogene (31/159 nt)	yoeH	pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related
	?	NC_000913_3_bme_pgi	2068430 =	47 (1.180)					intergenic (‑11/‑205)	yoeH/yoeA	pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related/CP4‑44 prophage; putative disrupted hemin or colicin receptor;Phage or Prophage Related; interrupted by IS2 and C‑terminal deletion
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTATGAAGATGACAATAATTATAGATATATGA  >  NC_000913_3_bme_pgi/2068282‑2068570                                                                                                                                                      |                                                                                                                                             aCCGCATATACGTTCAATTTCAGCAATGAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGAt                                                                                                                                              <  1:419670/149‑1 (MQ=255) aCCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGAt                                                                                                                                              <  1:441103/149‑1 (MQ=255) aCCGCATATACGGTCAATTTCAGCAATTAAATACCCTAGGCCGTCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGAt                                                                                                                                              <  1:549074/149‑1 (MQ=255)        ataCGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCa                                                                                                                                       <  1:553372/149‑1 (MQ=255)        ataCGGTCAATTTCAGCAAGTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCa                                                                                                                                       <  1:266941/149‑1 (MQ=255)         taCGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCTAGAGTGCGGTCCGTTGATACAActcg                                                                                                                                      >  2:48053/1‑146 (MQ=255)                       gCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGacac                                                                                                                        <  1:146145/149‑1 (MQ=255)                         aattaattAAATTACCCACGCCAAAGTATTCGTCATCTCAATGGTGGTAGCTTCTTTCAGTCACCATTTTTTCAACTCCGCTTTCACACGAAAGCCAC‑CTTATCTCAAGAGTGCGGTCCGTGGATACAATCAGAGACCGACTGACACGa                                                                                                                      <  2:532654/149‑1 (MQ=255)                            taattaCAGTACCCACGCCTAATTATTTGTCATCACAAGGATGGTTCCTTCTTTCGGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACGCTTAGGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTc                                                                                                                   <  2:389045/149‑1 (MQ=255)                               ttaCATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCaga                                                                                                                <  1:575998/149‑1 (MQ=255)                               ctacacgaTCCACTCCAAAGTAGTTGTCATCACAATGAGGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCaga                                                                                                                <  2:425244/142‑1 (MQ=255)                                taCATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCagag                                                                                                               <  1:445957/149‑1 (MQ=255)                                   aTTATCCACGCCAAAGTATTTGTCATCACAATTATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGACAGCGGaa                                                                                                            >  2:575427/1‑149 (MQ=255)                                      aaccACCCCAAAGTAATAGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACAGAACTCTTATGTCAAAAGTGCGGTCCGTGGATACAACCACACACCCACTGACACGAGTCCAAGGAAaca                                                                                                         >  2:296405/3‑148 (MQ=255)                                          aCGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACgg                                                                                                     <  2:796472/149‑1 (MQ=255)                                                    aTTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAg                                                                                           <  1:465582/149‑1 (MQ=255)                                                    aTTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAg                                                                                           <  2:159754/149‑1 (MQ=255)                                                      ttGTCATCATCATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTc                                                                                         <  1:248933/149‑1 (MQ=255)                                                      ttGTCATCACTATGGTGGTTCCTTCTTTCAATCATCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTc                                                                                         <  1:274428/149‑1 (MQ=255)                                                      ttGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTc                                                                                         <  2:430119/149‑1 (MQ=255)                                                           atcaCAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGGCAGAGGAAACGACGGATATGTTCAGTCGTaaa                                                                                    >  1:538919/1‑149 (MQ=255)                                                            tcaCAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTaaaa                                                                                   >  1:122747/1‑149 (MQ=255)                                                               caATGATGGTACCTTCCTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAatat                                                                                <  1:225430/149‑1 (MQ=255)                                                                aaTGATGGTACCTTCTTTCAGACACCATTTTTTTTTTTTTGTTTTC‑CACGGACCGCACTCTTATGTCAAAAGACCGGACCGTGGATACAACCAGAGACCGACTGACACGAGACCAAGGAAACGACGGACATGTTCAGTCTTAAAAtatc                                                                               >  2:536717/1‑149 (MQ=255)                                                                 atgatgGTACCTTCTTTCAGCCATCATTTTTTCAACTCCGTTTTC‑CACCGACCGCACTCTTATGTCAAGAGTGCGTTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAAtatct                                                                              <  1:248453/149‑1 (MQ=255)                                                                  tgatgGTACCTTCTTTCAGACACCATTTTTTCAACTCCTTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAAtatcta                                                                             <  2:664727/149‑1 (MQ=255)                                                                   ggtgGTAGCTTCTTGCGGACACCGGTTTTTCGACTCCGTTTTC‑GACGGACCGCACGCTTAGGTCAAGAGTGCGGGCCGGGGATACAACCAGAGAGCGATTGACACGAGTCAGAGGAAACGACGGATATGTGCAGTCGTAAAAgatctag                                                                            <  2:94833/147‑2 (MQ=255)                                                                        tACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTTAAATATCTATCacaa                                                                       >  2:59085/1‑149 (MQ=255)                                                                          ccTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCaaaaaa                                                                     <  1:259956/149‑1 (MQ=255)                                                                             tcttTCAGACACCATTTTTTTTTTTTTTTTTTC‑CACGGGCCGCACTCTTATGTCAATAGTGCGGTCGGTGGATACAACCAGAGACCGATTGAAATTAGTCAGAGGTAACGACGGATATGTTCAGTTGTAAAATATCTATaaaacactat                                                                  >  2:703352/1‑143 (MQ=255)                                                                                    ctccccATTTTTTCAACCCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAg                                                           <  1:134796/145‑1 (MQ=255)                                                                                         cATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATAAAGGTCaa                                                      >  1:572001/1‑149 (MQ=255)                                                                                          aTTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCaaa                                                     >  1:561194/1‑149 (MQ=255)                                                                                          aTTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATATCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCaaa                                                     >  1:326546/1‑149 (MQ=255)                                                                                                 cAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAATACATGATTACGGTCAAAAATGttt                                              <  1:694805/149‑1 (MQ=255)                                                                                                 cAACTCCGTTTTC‑CACGGACCGCACTCTTATATCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGttt                                              <  2:326546/149‑1 (MQ=255)                                                                                                       cGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAAAATAATAAAGGTCAAAAATGTTGGATAtt                                        >  1:73074/1‑149 (MQ=255)                                                                                                        gTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATAttt                                       >  1:288580/1‑149 (MQ=255)                                                                                                            tC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACaa                                   <  1:398294/149‑1 (MQ=255)                                                                                                                        cACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTATGAAGAt                        >  1:434817/1‑149 (MQ=255)                                                                                                                        cACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTATGAAGAt                        >  1:710224/1‑149 (MQ=255)                                                                                                                         aCTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGCCTGACACGCGTCAGAGGAAACGACGGATATATTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCCAAAATTTTTGCTATTTTAAATTTATTCAGATg                       >  2:188702/1‑149 (MQ=255)                                                                                                                          ctctTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTATGAAGATGa                      <  2:434817/149‑1 (MQ=255)                                                                                                                                 gTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTATGAAGATGACaataat               >  1:687371/1‑149 (MQ=255)                                                                                                                                 gTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTATGAAGATGACaataat               >  1:109855/1‑149 (MQ=255)                                                                                                                                  tCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAacgacg                                                                                                      <  1:788663/61‑1 (MQ=255)                                                                                                                                  tCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAacgacg                                                                                                      >  2:788663/1‑61 (MQ=255)                                                                                                                                            ggTCCGTGGAAACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTATGAAGATGACAATAATTATAGatatat    <  1:571520/149‑1 (MQ=255)                                                                                                                                              tCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAGAAATGTTTGATATTTACAATTTATGAAGATGACAATAATTATAGATATATga  >  1:739210/1‑149 (MQ=255)                                                                                                                                              tCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAGAAATGTTTGATATTGACAATTTATGAAGATGACAATAATTATAGATATATga  >  1:741269/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                             ACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTATGAAGATGACAATAATTATAGATATATGA  >  NC_000913_3_bme_pgi/2068282‑2068570

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.