New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_pgi 4240185 =NA (NA)7 (0.140) 6/256 NT NA noncoding (1/37 nt) REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913_3_hsa_pgi 4240218 = NA (NA)noncoding (34/37 nt) REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 1149 total aligned reads displayed.

GCAAAATAAGGCTTCATTTTTACCACCTTTATCAGGTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCGTTATACAGGAAGCTCGCCA  >  NC_000913_3_hsa_pgi/4240037‑4240333
                                                                                                                                                     |                                                                                                                                                     
   agtgacgtcatagcagtacctccttcacagtggcgagcttcctgtataacgcaaaaatgtgacggagatctatattttttgtgtatgttttgttcaacctggatttggagcgcgcctccaccaaagcaggatatacctacccgtagGcc                                                                                                                                                     <  1:818766‑M1/3‑1 (MQ=255)
   aaaTGAGGCTTCATTTTTACCACCTTTATCAGGTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCg                                                                                                                                                    <  2:62174/149‑1 (MQ=255)
     tgacgtcatagcagtacctccttcacagtggcgagcttcctgtataacgcaaaaatgtgacggagatctatattttttgtgtatgttttgttcaacctggatttggagcgcgcctccaccaaagccggatatacctacccgtagGCCgg                                                                                                                                                   <  1:960155‑M1/5‑1 (MQ=255)
     aTAAGGCTTCATTTTTACCACCTTTATCAGGTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGa                                                                                                                                                  >  1:118533/1‑149 (MQ=255)
       aagtcatagcagtacctccttcacagtggcgagcttcctgtataaagcaaagatgtgacgtagatctatattttttgtgtatgttttgttcaagctggatttggagcgcgcctcacccaaagcagaatagaccaaacgctagGCCGGA‑t                                                                                                                                                <  2:164114‑M1/7‑1 (MQ=255)
         ggCTTCATTTTTACCACCTTTATCAGGTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGAGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑Tgcg                                                                                                                                             >  1:196460/1‑149 (MQ=255)
          gCTTCATTTTTACCACCTTTATCAGGTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTTTCTTGCCGTT‑Tgcgt                                                                                                                                            >  2:778159/1‑148 (MQ=255)
                tttttACCTTCTTTATTCGGTTACGTTTCATTTGTTCCAGAGGAACTTTTTCGATTTTTCGCGCATTGCTGGTGGCTGGGGATCGCCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAg                                                                                                                                      <  1:667760/149‑1 (MQ=255)
                tttttACCACCTTTATCAGGTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGAGGTTTGTCTTGCCGGA‑TGCGCCGCCAg                                                                                                                                      >  1:210314/1‑149 (MQ=255)
                ttattACCACCTTTATCAGGTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAg                                                                                                                                      <  2:737027/146‑1 (MQ=255)
                  tttACCAGCGTTATCAGGTTAAGGTTCATTTGTTCCAGATGAACATTCTCGATCTTTCGTGCATTGCTGGCGGCTGGGAACCACCTGACTGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGgc                                                                                                                                    <  1:172221/149‑1 (MQ=255)
                       cgacTTTATCTGGTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCTTTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACGGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGc                                                                                                                               <  1:452475/146‑1 (MQ=255)
                       caccTTTATCAGGTTACGTTTCATTTGTTCCAGAGGACCATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGc                                                                                                                               >  1:505863/1‑149 (MQ=255)
                       caccTTTATCAGGTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTTAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCTCCAGGCCCGGc                                                                                                                               >  2:844089/1‑149 (MQ=255)
                       caccTTTATCAGGTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGc                                                                                                                               <  2:809463/149‑1 (MQ=255)
                         catttATCAGGTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑AGTACGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCtt                                                                                                                             >  1:151853/3‑149 (MQ=255)
                           tttATCAGGTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAAGGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTAt                                                                                                                           <  1:31378/149‑1 (MQ=255)
                             tATCAGGTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATcc                                                                                                                         <  2:352141/149‑1 (MQ=255)
                              agcAGGTTACGTTTCATTTGTTCCAGAGGAACATTGGCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCg                                                                                                                        <  2:178314/147‑1 (MQ=255)
                              aTCAGGTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCgg                                                                                                                                >  1:922805/1‑141 (MQ=255)
                              aTCAGGTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCg                                                                                                                        >  1:874687/1‑149 (MQ=255)
                                        gTTTCATTGGTTCCACGGGAACAGTGTCGATTTTTCGCGCATTGCTGGTTGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGggt                                                                                                              <  2:646166/149‑1 (MQ=255)
                                         tttCATTTGTTCCAGAGGAACTTTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGggta                                                                                                             >  1:348390/1‑149 (MQ=255)
                                          ttCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTTGGAATTACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGggtag                                                                                                            <  1:279850/149‑1 (MQ=255)
                                          ttCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGggtag                                                                                                            >  1:948082/1‑149 (MQ=255)
                                          ttCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGggtag                                                                                                            <  1:973025/149‑1 (MQ=255)
                                          ttCAGTTGTTCCAGATGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGggtag                                                                                                            <  1:852230/149‑1 (MQ=255)
                                           tCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGCTTTTTGAATTATCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCTGCTTATGCGGCCTCCGggaagg                                                                                                           >  2:900689/1‑149 (MQ=255)
                                            taTTGGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGggtaggt                                                                                                          <  2:752509/148‑1 (MQ=255)
                                            cATTTGTTCCAGTGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGTGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGggtaggt                                                                                                          <  1:64277/149‑1 (MQ=255)
                                            cATTTGTTCCAGAGGAACATTGTGGATTTTTCGCGCATTGCTGGTGGCTGGGATTCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGggtaggt                                                                                                          <  1:386155/149‑1 (MQ=255)
                                              tttGTTCCAGAGGAACATTGTCGATATTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGtat                                                                                                        >  2:368693/1‑149 (MQ=255)
                                                     cAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGggtaggt                                                                                                          >  1:618942/1‑140 (MQ=255)
                                                     cAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGc                                                                                                 >  1:715962/1‑149 (MQ=255)
                                                      agagGAACATTGTCGATGTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGTCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCt                                                                                                <  2:922417/149‑1 (MQ=255)
                                                       gagGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCgg                                                                                                                                >  1:298155/1‑116 (MQ=255)
                                                         ggAACATTGTGGACTTTTCGCGCATTGCTGGTGGCTGGTACTCACCTGAATGGGTGATTTTTGAATGACCGGCTTT‑GGTGCTGTTTGTCTTGGCGGA‑TGCGCCGCCCGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTtg                                                                                             <  2:713377/149‑1 (MQ=255)
                                                         ggAACATTGTCGATGTTTCGCGCATTGGTGGTGGTTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTtg                                                                                             <  2:213307/149‑1 (MQ=255)
                                                          gAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTtgg                                                                                            <  2:522478/149‑1 (MQ=255)
                                                          gAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTAAGGGTAGGTATATCCGGCTTtgg                                                                                            >  1:934600/1‑149 (MQ=255)
                                                          gAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑AGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTtgg                                                                                            >  1:289355/1‑149 (MQ=255)
                                                           aaCATTGGCGTTTTTTCGCGCATTGCTGGTGGCTGGGAATCTACTGCATGGGTGATTTTTGAATTACCGGCTTT‑GGTGAGGTTTGTCTTGCCGGA‑GGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTtggt                                                                                           <  1:472077/149‑1 (MQ=255)
                                                             cATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTtggtgg                                                                                         <  1:223697/149‑1 (MQ=255)
                                                             cATTGTCGATCTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GTTGCGGTTTGTCTTGCCGGA‑TGAGCCGCCAGGAGCGGCTTATCCGTCCCACGGTTCGGTCTATACGGCTGtggtgg                                                                                         >  2:678515/1‑149 (MQ=255)
                                                               ttGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGACGGA‑TGAGCCGCCAGGCACGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAg                                                                                       >  1:835531/1‑149 (MQ=255)
                                                                     aTTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGCATGGGTGATTTTTGAATTACAGGCATT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTCCGAGTAGGGAATTCAGGCTGTGCTGGAGccggcc                                                                                 >  2:70101/1‑146 (MQ=255)
                                                                     aTTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTAACGACTTT‑GGGGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTCGGGATATCCGGCTTTGGTGGAAgcgcgc                                                                                 >  2:57283/1‑149 (MQ=255)
                                                                       ttttCGCGTATTGTTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTc                                                                               <  2:422107/149‑1 (MQ=255)
                                                                              gcATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTACCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGAAGGCCCGCTCCAAATcc                                                                        >  1:761912/1‑149 (MQ=255)
                                                                               cATTGCTGGTGGCTGTGAATCATCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCa                                                                       <  2:326965/149‑1 (MQ=255)
                                                                                aTTGCTGGTGGCTGGGAATCACCTGAGTGGGTGTTTTTTGAATTGCCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAg                                                                      <  1:592391/149‑1 (MQ=255)
                                                                                aTTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAg                                                                      <  1:656213/149‑1 (MQ=255)
                                                                                 ttGCTTGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAgg                                                                     <  2:112898/149‑1 (MQ=255)
                                                                                  tGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGt                                                                    <  2:633390/149‑1 (MQ=255)
                                                                                     tggtggCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGa                                                                 >  1:89998/1‑149 (MQ=255)
                                                                                       gtggCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTc                                                                               <  2:88054/133‑1 (MQ=255)
                                                                                         ggCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACaa                                                             >  1:141865/1‑149 (MQ=255)
                                                                                           cTGTGAATCACCTGAATGGGGGATTTTTGAATTACCGGCGTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTAGCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACaaaa                                                           <  1:607195/149‑1 (MQ=255)
                                                                                           cTGGGAATTCCCTGAATGGGTGATTTTTGAATTTCCGGTTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATGCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACaaaa                                                           <  1:486392/149‑1 (MQ=255)
                                                                                           cTGGGAATCTCCTGACTGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACaaaa                                                           <  2:142041/149‑1 (MQ=255)
                                                                                           cTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGATTGTCTTGCCGGA‑TGCTCCACCAGGCGCGGCTTATCCGGCCTACGGGGAGGTATATCCGGCCTTGTTGTAATCGCCCTCCCCATCCAGATTGAACgaag                                                           >  2:244433/1‑148 (MQ=255)
                                                                                            tGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GATGCGGTTTGTCTTGCCGGA‑TGGGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGAATATCCGGCTTTGGTGGAGGCGCCTTCCGACTCCAGGTTTCGCAAAAc                                                          >  2:490133/1‑149 (MQ=255)
                                                                                              ggAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACAt                                                        >  1:3296/1‑149 (MQ=255)
                                                                                               gAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGCTGAACAAAACATa                                                       >  2:788430/1‑149 (MQ=255)
                                                                                               atctCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGCTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATa                                                       <  2:942755/146‑1 (MQ=255)
                                                                                                aaTCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTACGATTTGTCTTGCCGGA‑TGCGACGCCAGACGCGGCTTATCCGGCCTACGGGAAGGTATCTCCGGCATTGATGAAGCCGCGCTCCAAAACCACGACGAACAAAACATac                                                      >  2:982622/1‑149 (MQ=255)
                                                                                                  tCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATa                                                       >  2:503847/1‑146 (MQ=255)
                                                                                                    aCCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACAGaa                                                  >  1:367113/1‑149 (MQ=255)
                                                                                                     ccTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGGGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGACGCGCCCCAAATCCAGGTTGAACAAACCATaccccga                                                 >  2:459405/1‑144 (MQ=255)
                                                                                                      cTGAATGGGTGATTTTTGAATTACCGGCTTTACGAGC‑TTGTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACaaaa                                                >  1:995007/1‑149 (MQ=255)
                                                                                                      cTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAgg                                                                                      <  1:774561/111‑1 (MQ=255)
                                                                                                       tGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCGCGGGTGGCGGCGCGACCAAAATCCAGGTTGAACAAAACATACACaaaaa                                               >  1:888094/1‑149 (MQ=255)
                                                                                                        gAATGGGTGATTTTTGAATTACCGGCTTT‑GGAGCGGTTTGTCTTGCCGGA‑GGCGCCGCCAGGCACGGATTATCCGGCCTACGGGTAGGTCTATTCGGGTTTGGTCAAGGCTCGCTCCAAATCCAGGATTCACAAAAACTAACCaaaaag                                              >  2:277612/1‑148 (MQ=255)
                                                                                                            ggttGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAAtata                                          <  1:251751/146‑1 (MQ=255)
                                                                                                            gggTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAAtata                                          >  1:40196/1‑149 (MQ=255)
                                                                                                            gggTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCAGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGACGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAAaata                                          >  1:581060/1‑149 (MQ=255)
                                                                                                             ggTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAAtataa                                         >  1:414486/1‑148 (MQ=255)
                                                                                                                 aTTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGAtct                                     <  1:746608/149‑1 (MQ=255)
                                                                                                                   ttttGAATTACCGGTTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGTCGCCAGGCGCGGCTTACCCGGCCTACTGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTcc                                   <  2:394978/149‑1 (MQ=255)
                                                                                                                   ttttGAATTACCGGCTTT‑GGTGTGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAATACATACACAAAAAATATAGATCTcc                                   <  2:826204/149‑1 (MQ=255)
                                                                                                                   ttttGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGGCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTcc                                   <  1:692836/149‑1 (MQ=255)
                                                                                                                   ttttGAATTACCGGCTTT‑GGTGCGGTTTGTCTCGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGTACAAAACATACACAAAAAATATAGATCTcc                                   <  2:312235/149‑1 (MQ=255)
                                                                                                                     ttGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGt                                 <  1:798705/149‑1 (MQ=255)
                                                                                                                         aTTACCGTCTTT‑GGTGTGCGTTGTTTTGCCGGACTGC‑CCGCCAGGCGCGGCTTATCCGGCCTACGTGTAGGTATAGCCGCCTTTCGTGTAGGCGCGCTCCAAATCCAGGTTGAACAATACATACACAAAAAATATAGATCTCCGTcaca                             <  2:434634/149‑1 (MQ=255)
                                                                                                                         aTTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACaaaa                                                           <  2:297029/119‑1 (MQ=255)
                                                                                                                              cGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCAAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACAttttt                        >  1:543512/1‑149 (MQ=255)
                                                                                                                               ggCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGAtctc                                    <  1:730555/136‑1 (MQ=255)
                                                                                                                                gCTTG‑GGTGCGGTTTGTCTTTGCGGA‑TGCGCCGCCAGGCGCGGCTTAGCCGACCTCCGAGTCGTAAACTGCGGCGGGGGTGGAGGCGCGCTCCAAATCCAGGGTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGc                      <  2:863239/149‑1 (MQ=255)
                                                                                                                                 cTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCg                     <  2:967571/149‑1 (MQ=255)
                                                                                                                                  ttt‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCgg                                                                                                  <  1:1000790/71‑1 (MQ=255)
                                                                                                                                  ttt‑GGTGCGGTTTGTCTTGCCGGA‑TGCGACGCTAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCGt                    <  1:434708/149‑1 (MQ=255)
                                                                                                                                  cttagctGCGGTTTGTCTGGCTCGA‑TGCGCCGCCAGTCCCGTCTTATCCGGCCTACGGGTAGGTATACCCGGCTTGGCTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCg                     <  2:554673/143‑1 (MQ=255)
                                                                                                                                       gTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCGTtata                >  1:495858/1‑149 (MQ=255)
                                                                                                                                       gTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCGTtata                >  2:599710/1‑149 (MQ=255)
                                                                                                                                         gCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCGTTATACa              <  2:539253/149‑1 (MQ=255)
                                                                                                                                              ttGTCTTGCCGGA‑TGCGCCGCCGGGCGCGGCTTAGCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCGTTATACAGGAAg         <  1:532538/149‑1 (MQ=255)
                                                                                                                                              ttGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCGTTATACAGGAAg         <  1:559127/149‑1 (MQ=255)
                                                                                                                                                 tCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAAAATACACAAAAAATATAGATCTCCGTCACATTTTTGCGTTATACAGGAAGATc      >  1:914876/1‑149 (MQ=255)
                                                                                                                                                     GCCGGC‑TGAGTCGCCAGGTGCGGCTTTTGCGGGCTACGGGTAGGTATGTCCGGCTTTTTTGGAGGCGCGCGCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCGTTATACAGGAAGCTCGCCa  >  2:660952‑M1/1‑149 (MQ=255)
                                                                                                                                                     GCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCGTTATACAGGAAGCTCGCCa  >  1:520105‑M1/1‑149 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
GCAAAATAAGGCTTCATTTTTACCACCTTTATCAGGTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTT‑GGTGCGGTTTGTCTTGCCGGA‑TGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCGTTATACAGGAAGCTCGCCA  >  NC_000913_3_hsa_pgi/4240037‑4240333

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.