| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_pgi | 1207790 = | 15 (0.280) | 9 (0.190) | 9/238 | NT | 35.2% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_hsa_pgi | 1209619 = | 20 (0.430) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
CAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT‑TTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGG > NC_000913_3_hsa_pgi/1207644‑1207938 | cAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTG < 1:668502‑M1/149‑1 (MQ=255)cAGCGTGGTGGAGGCATCCGGTGCCAGACTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAACTCGGATGGCACTGTGCAACCGGCGCTCGAAAACCTTG > 2:988212‑M1/1‑149 (MQ=255) atcctgcacagttcagcgcattacgttgtagatctgtgttctggtcatatgttgatacgcgtagatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTgg < 1:885666‑M1/4‑1 (MQ=255) tggttgAGGCATTCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCTCACTTCGCGTGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT‑TTG < 1:260373‑M1/149‑1 (MQ=255) tgcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGT‑TTg < 1:550654‑M1/8‑1 (MQ=255) ggtggAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTCGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT‑TTGG < 2:1000890‑M1/149‑1 (MQ=255) ggacagttcagcgcattacgttgtagatttgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggttaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGT‑TTgg > 2:690110‑M1/141‑149 (MQ=255) gacagtttatcgtattacgttgtagatctgtgttcttgttatttgttgatacgcgtagatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataatcgTTGGT‑TTggg > 2:140651‑M1/140‑149 (MQ=255) acagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGT‑TTGGga > 2:624650‑M1/139‑149 (MQ=255) aGGCATCCGGTGCCAGCTTGGAGAATGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT‑TTGGGAGAA < 2:988570‑M1/149‑1 (MQ=255) ggCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT‑TTGGGAGAAG > 2:937154‑M1/1‑149 (MQ=255) gCATCCGGTGCCAGTCTGGAGAAGGGGCGGCACGACCAGTTACTTGCGGGACTTTGCGTGCTGCTGTTAAGGGGCCTGAATCCGTTTGGCTATTGTAATTGGGATGACATTGTGCATACGGCTATCGAACAGCTTGGTGTTgggtttgg > 2:761396/1‑144 (MQ=255) gCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT‑TTGGGAGAAGG > 2:543810‑M1/1‑149 (MQ=255) aTCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCGGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCAATGTGCAAACGGCTCCCGAAAACCTCGGT‑TTGAGAGACGGAg > 2:550236/1‑149 (MQ=17) tCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT‑TTGGGAGCAGGcga < 2:677864‑M1/149‑4 (MQ=255) ccGGTGCCAGCCTGGAGATGGGGCGGCACGATCAGTTACTTACCGTATTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT‑TTGGGAGAAGGctct < 1:297841‑M1/149‑5 (MQ=255) ccGGTGCCAGCCTGGAGAAGGGGCGGCCTGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT‑TTGGGAGAAGGctct < 2:947043‑M1/149‑5 (MQ=255) ggTTCCAGCCTGGGGGAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAACCCTTGGT‑TTGGGAGAAGGctctgc < 2:731018‑M1/149‑7 (MQ=255) gCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT‑TTGGGAGAAGGctctgcatt > 1:630090‑M1/1‑140 (MQ=255) gttgaagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGT‑TTGGGAGAAGGAGCAAAACTCaa > 1:104854‑M1/122‑149 (MQ=255) ccTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT‑TTGGGAGAAGGAGCACAACTCAATg > 2:768038/1‑149 (MQ=255) ttgGAGTTGGGGCGGCACGACCAGGTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT‑TTGGGAGAAGGctctgcattacctgt < 1:16304‑M1/148‑16 (MQ=255) cTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT‑TTGGGAGAAGGctctgcattacctgt < 2:540976‑M1/149‑16 (MQ=255) tGGAGAAGGGTCGGTACCAACAGTTACTTACCGCACTTCGCTCGCTGCTGTTAAGCTGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT‑TTGGGAGAAGGctctgcattacctgtt < 1:503819‑M1/149‑17 (MQ=255) gcggcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT‑TTGGGAGAAGGctctgcattacctgttggtgtcccgg < 1:918822‑M1/149‑27 (MQ=255) ccAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT‑TTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGGTACATTAGGAc > 1:192322/1‑149 (MQ=255) gttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGT‑TTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCa < 1:138026‑M1/54‑1 (MQ=255) ttacttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT‑TTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAc < 1:706022/149‑1 (MQ=255) acCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAGATCGGATGGCACTGTGCAAAAGGCTCTCGAAAACCTTGGT‑TTGGGAGAAGGctcttaattacctctcggtgtcccggttccgcggcctccagccac > 2:245907‑M1/1‑104 (MQ=255) gcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttggtatttcttcattttcataaacgGTGGT‑TTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTCGGACGCACCGGTTTc < 2:263907‑M1/62‑1 (MQ=255) ccGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT‑TTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccact > 1:776631‑M1/1‑103 (MQ=255) gcccTTAGCCCGCTGCTGTTAAGCCGCAAGAATCCGATTGGCGATATCAAATCGGATGGCACTGTGCACACGGCTCTCGAAAACCTTGGT‑TTGGGAGAAGGAGCAAAACTCAATCCACCAACCGCTACATTAGGACCCACCGGCTTCac > 2:623321/4‑148 (MQ=21) cACTGCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATAGCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT‑TTGGGAGAAGGcgctgcattacctgttggtgtcccggttccgtggccttcagccactccg < 1:415648‑M1/149‑50 (MQ=255) catagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGT‑TTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGc > 1:672277‑M1/83‑149 (MQ=255) agccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgGTGGT‑TTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAgctct < 2:933166‑M1/70‑3 (MQ=255) cgcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT‑TTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccacgccaccaacag > 2:253749‑M1/1‑93 (MQ=255) gcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT‑TTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATccc > 2:770866/1‑149 (MQ=255) cgcTGGTGTTAGGCCGGAAGAATCCGTCTGGCGATATCCACTCGGATGGCACTCTGCAAAAGGCTCTCGAAAACCTTCGT‑TGGGGAGAAGGctctccattacctgttggtgtcccggttccgtggccttcggccactccgccaacaggc < 2:653352‑M1/149‑59 (MQ=255) tgctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGGTGGAACAGGGTTAAGGGCTCTCGAAAACCTTGGT‑TTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTCCATAGCTATACCGGtt > 1:698734/1‑149 (MQ=25) ggctgtTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT‑TTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctgg < 1:364395‑M1/148‑62 (MQ=255) gcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGT‑TTGGga < 2:521385‑M1/11‑1 (MQ=255) gcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGT‑TTGGga > 1:521385‑M1/71‑81 (MQ=255) gcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGT‑TTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAt > 1:773177‑M1/71‑149 (MQ=255) cctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGT‑TTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTg < 2:937787‑M1/93‑1 (MQ=255) aTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT‑TTGGGCGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgcc < 2:805057‑M1/149‑80 (MQ=255) aTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT‑TTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgcc < 1:283489‑M1/149‑80 (MQ=255) gtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGT‑TTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCa > 1:937787‑M1/53‑149 (MQ=255) tgATAGCAAAGCGGAGGGCACTGGGCAAACGGCTCTCGAAAACCTTGGT‑TTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTaa < 2:445967/148‑1 (MQ=255) cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT‑TTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGTACGCACCTGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGtca > 1:82387/1‑147 (MQ=255) ggCACTGTGCAAACGGCTCTCGAAAACCTTGGT‑TTGGGAGAAGGCGCAAAACTCAATGCAGCATAGGCTACATTAGGACGCGCCGGTTGCATAGCTATACCGGTTATATATGGTGGTCTTGAGCAATCGGTAATCATTCAGTGGGGGTg > 2:38019/1‑149 (MQ=38) cTGTGCAAAGTGCTCTCGAAACCCTTGGT‑TTGGGAGAAGGctctgcattacctgttggcgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactg < 1:64120‑M1/149‑110 (MQ=255) tgCAAACGGCTCTCGAAAACCGTGGT‑TTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGGTGTGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGcc < 1:38019/149‑1 (MQ=255) ttttcataaacgTTGGT‑TTGGGAGGAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCa < 1:673596‑M1/137‑1 (MQ=255) tctcGAAAACCTTGGT‑TTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatc > 1:523672‑M1/1‑27 (MQ=255) tctcGAAAACCTTGGT‑TTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCCTAGCTATACGGGTTAGGATTGGTGGTATTGAGCAATCCGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAt > 2:334423/1‑149 (MQ=255) tcGAAAACCTTGGT‑TTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAAATAAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCCAAAGCATCt > 1:698308/1‑149 (MQ=255) gAAAACCTTGGT‑TTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATAATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGc > 1:503636/1‑149 (MQ=255) cTTGGT‑TTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGAGGGAATGCCGCAAAAGCCTCTGCCCCTgg > 1:461455/1‑149 (MQ=255) ttGGT‑TAGGGAGAGGCgcctgcatttcctgttgggttcccggttcgttggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaa < 2:378196‑M1/149‑134 (MQ=255) TTGGT‑TTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggtg > 2:252804‑M1/1‑87 (MQ=255) TTGGT‑TTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggtg < 1:252804‑M1/87‑1 (MQ=255) | CAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT‑TTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGG > NC_000913_3_hsa_pgi/1207644‑1207938 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |