New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_pgi	1097372 =	NA (NA)	14 (0.220)	12/280	5.7	22.2%	intergenic (+543/+193)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
	?	NC_000913_3_hsa_pgi	1097531 =	50 (0.760)					intergenic (+702/+34)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
Rejected: Coverage evenness skew score above cutoff.

CTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTC‑TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAA  >  NC_000913_3_hsa_pgi/1097438‑1097678                                                                                               |                                                                                                                                                    cTGCGTTCACGGTCTGTCCAACTGTCTGCCGCCAGTTGTCGAACCCCGGTC‑GGGCTCCGAAAGCCTTCCGGTGCGTTCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa                                                                                              <  1:549821/149‑1 (MQ=11) cTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTC‑TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc                                                                                                <  2:784936/147‑1 (MQ=11) cTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTC‑TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc                                                                                                >  1:784936/1‑147 (MQ=11)  tGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTC‑TCATCCCCCCGGTGTGTGCAATATACGAAAAAACAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGCGGGCGGGGTTCGaa                                                                                             >  2:433707/1‑149 (MQ=255)   gCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTC‑TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCTGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAc                                                                                            <  1:746236/149‑1 (MQ=18)   gCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTC‑TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAc                                                                                            <  1:39115/149‑1 (MQ=33)    cGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTC‑TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc                                                                                           <  1:244189/149‑1 (MQ=34)     gTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTC‑TCATCCCCCCGGTGTGTGCAATATACGCAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGAGAGGGGGGGCTTCGAAccc                                                                                          >  1:1081454/1‑149 (MQ=255)     gTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTC‑TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGGAAccc                                                                                          >  2:1033221/1‑149 (MQ=17)           ggTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTC‑TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATa                                                                                    >  1:166186/1‑149 (MQ=40)            gTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTC‑TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCGTTAAATATGGCGGTGAGGGGGGGATTCTAACCCCCGATAc                                                                                   >  1:947890/1‑149 (MQ=255)               tGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTC‑TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGGTACGtt                                                                                >  1:941560/1‑149 (MQ=255)                 tCCAACTGGCTGTCGCCAGTTGTCGAACCCCGTTCGGGGCTTC‑TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc                                                                              <  1:56456/149‑1 (MQ=255)                 tCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTC‑TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGCTTCGAACCCCCGATACGTTGc                                                                              >  2:942428/1‑149 (MQ=255)                  ccAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTC‑TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGcc                                                                             <  2:116159/149‑1 (MQ=255)                    aaCTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTC‑TCATCCCCCCGGTGTGTGCAATATAGGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATAAGTTGCCGt                                                                           >  2:575871/1‑149 (MQ=255)                    aaCTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTC‑TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTCAATATAGCGGCGCAGTGGGGATTCGAACCCCCGATACGTTGCCGt                                                                           >  1:496189/1‑149 (MQ=14)                    aaCTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTC‑TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGTTCGAACGCCCGGTACGTTGCCGt                                                                           >  1:911716/1‑149 (MQ=255)                    aaCTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTC‑TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGCCCCCCCGATACGTCGCCGt                                                                           >  2:768277/1‑149 (MQ=255)                    aaCTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTC‑TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGt                                                                           >  2:534724/1‑149 (MQ=255)                    aaCTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTC‑TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAACCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGTTCGATCCCCCGGTACGtctccgg                                                                           >  1:115468/1‑143 (MQ=11)                        ggCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTC‑TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCCATACGTTGACCtattc                                                                       >  2:534825/1‑147 (MQ=255)                            ctCGCCAGTGGTGAAACCCCGGACGGGGTTTC‑TCATCCCCCCGGTTTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATacacac                                                                   <  2:179382/148‑1 (MQ=17)                               gCCAGTTGTCGAACCCCGGTCGGGGCTTC‑TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGtata                                                                        <  1:1058092/141‑1 (MQ=255)                               gCCAGTTGTCGAACCCCGGTCGGGGCTTC‑TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGtata                                                                        >  2:1058092/1‑141 (MQ=255)                                ccAGTTGTCGAACCACGGTCGGGGCTTC‑TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCTTACGAGCTCTTCTTTAAATATGGCGGTAAGGGGGGAATTAGAGCCCCCGATACGTTGCCCTATACACACTTTc                                                               >  2:378748/1‑149 (MQ=17)                                  aGTTGTCGAACCCCGGTCGGGGCTTC‑TCATCCCCCCGGTGAATTCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATAGGTTGCCGTATACACACGTTCCa                                                             >  1:512168/1‑149 (MQ=17)                                         gAACCCCGGTCGGGGCTTC‑TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGc                                                      >  2:599938/1‑149 (MQ=255)                                          aaCCCCGGTCGGGGCTTC‑TCATCCCCCCGGTGTGTGCACTATACGCAAAAACAGCCCGTACTTTCGTACGAGCCCTTCTCTAAATATGGCGGGGAGGGGGGGAATCGAACCCCCGATACGTTGCCCTATACACCCTTTCCTGGCGTGCt                                                     >  2:400520/1‑149 (MQ=17)                                                 gTCGGGGCTTC‑TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGGGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAg                                              <  2:397037/149‑1 (MQ=255)                                                  tCGGGGCTTC‑TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGc                                             <  1:768277/149‑1 (MQ=255)                                                    ggggCTTC‑TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGc                                                      <  2:665579/138‑1 (MQ=255)                                                    ggggCTTC‑TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGc                                                      >  1:665579/1‑138 (MQ=255)                                                       gCTTC‑TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTc                                        <  1:599938/149‑1 (MQ=255)                                                        cTTC‑TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCg                                       <  2:166186/149‑1 (MQ=255)                                                             tcATCCCCCCGGTGTGTGAAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGaca                                   <  1:637673/149‑1 (MQ=255)                                                                  cccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGGGTGCTCCTTCAGCAACTCGGACACCTCa                              >  1:516934/1‑149 (MQ=255)                                                                  cccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCa                              >  2:977817/1‑149 (MQ=255)                                                                  cccccGGTGTGTGCAATATACGAAAAAAAAGCCCATACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGTGAGAACCCCCGATACGTTGCAGTATACACACTTTCCCGGCGTGCTCTTTCAGCCCCTCGG‑CAACTCAc                             >  2:641221/1‑149 (MQ=17)                                                                        gtgtgtGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAAt                        <  2:883025/149‑1 (MQ=255)                                                                             tgCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCg                   >  1:133287/1‑149 (MQ=255)                                                                              gCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGCCGGCGGGCGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGt                  <  1:1110223/149‑1 (MQ=14)                                                                                aaTATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGGCCCTTCAGCCACTCGGACACCTCACCAGATTGTCGTTc                >  2:783062/1‑149 (MQ=255)                                                                                    taCGAAAAAAAAGCCCGTACTTTCCTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGt            <  1:993352/149‑1 (MQ=255)                                                                                       gAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCtt         >  1:775522/1‑149 (MQ=255)                                                                                       gAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGAGGATTCAAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCATGCTCCTTCAACCACTCGGACACCTCAACCAATTCCCGTTCCTCTCtt         >  2:162414/1‑149 (MQ=14)                                                                                        aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTg        <  2:2313/149‑1 (MQ=255)                                                                                        aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTg        >  1:2313/1‑149 (MQ=255)                                                                                           aaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGACCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTg     <  1:611530/149‑1 (MQ=255)                                                                                              aaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGaa  >  1:770298/1‑149 (MQ=255)                                                                                               |                                                                                                                                                    CTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTC‑TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAA  >  NC_000913_3_hsa_pgi/1097438‑1097678

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.