Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913_3_pae_pgi	3423735–3424544	3424544	1–810	35 [33]	[33] 35	[rrfD]–[rrlD]	[rrfD],[rrlD]

CCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTACACATCAAGGCTCAATGTTCAG  >  NC_000913_3_pae_pgi/3424504‑3424693                                          |                                                                                                                                                      cctccGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTTCt                                           >  2:945992/1‑149 (MQ=11)  ctccGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTTCTa                                          >  1:837535/1‑149 (MQ=31)    ccGTTACTCTTTAGCAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTTCTAAg                                        <  1:516132/149‑1 (MQ=17)     cGTTACTCTTCAGGAGGATACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCTGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTTCTAAGc                                       <  1:852810/149‑1 (MQ=12)       ttACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTC‑ACCACGACTTCTGTGGAGACTGGCGTCCACACTTCTAAGCCt                                     <  1:698128/149‑1 (MQ=11)        tACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTTCTAAGCCTc                                    <  1:945992/149‑1 (MQ=32)          ctctTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTTCTAAGCCTccc                                  <  1:943830/149‑1 (MQ=32)           tctTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTTCTAATCCTcccc                                 >  1:224587/1‑148 (MQ=17)             tttAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCAcc                               >  2:1201744/1‑149 (MQ=32)               tAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTa                             >  1:522783/1‑149 (MQ=32)               tAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTa                             >  1:522809/1‑149 (MQ=32)                cggaggaGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCACCCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCCCACTTCTTAGCCTCCCCCGTAt                            >  2:447794/2‑149 (MQ=11)                aggaggAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTAt                            >  2:1309733/1‑149 (MQ=32)                     gagaCCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTac                       >  2:419499/1‑149 (MQ=32)                      agaCCGCCCCATTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTaca                      <  2:691556/149‑1 (MQ=17)                       gaCCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTTAACGGTACAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTacac                     <  1:974937/149‑1 (MQ=12)                        aCCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCCCCTATCCTAcaca                    <  2:1017413/149‑1 (MQ=17)                        aCCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTAcaca                    >  1:828583/1‑149 (MQ=32)                          cGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCCAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTACACATc                  <  1:404483/149‑1 (MQ=17)                            ccccAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTACACATCaa                <  1:27608/149‑1 (MQ=32)                            ccccAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTACACATCaa                >  2:234987/1‑149 (MQ=32)                            ccccAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTACACATCaa                <  2:204171/149‑1 (MQ=32)                            ccccAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTAAGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTACACATCaa                >  2:27608/1‑149 (MQ=17)                              ccAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTACACATCAAgg              >  1:1352486/1‑149 (MQ=32)                                 gTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTACACATCAAGGCTc           >  2:1074325/1‑149 (MQ=32)                                   cAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTACACATCAAGGCTCaa         <  1:573478/149‑1 (MQ=32)                                    aaaCTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTACACATCAAGGCTCAAt        <  1:1224078/149‑1 (MQ=32)                                    aaaCTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTACACATCAAGGCTCAAt        <  1:234987/149‑1 (MQ=32)                                    aaaCTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTGCTAAGCCTCCCACCTATCCTACACATCAAGGCTCAAt        >  1:1346254/1‑149 (MQ=17)                                    aaaCTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATGTCAAGGTCGGC‑TCCAGGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTACACATCAAGGCTCAAt        >  1:1346063/1‑149 (MQ=17)                                     aaCTACCCACCAGACACTGTCCGCAACCCTGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTACACATCAAGGCTCAATg       <  1:56000/149‑1 (MQ=17)                                     aaCTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAACGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTACACATAAAGACTCCATg       >  1:96965/1‑149 (MQ=255)                                       ccaCCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTCAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACCGGCGTCCACACTTCTAAGCCTCCCACCTATCCTACACATCAAGGCTCAATGtt     <  2:395986/147‑1 (MQ=12)                                          cccACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTCTGCTACACATCAAGGCTCAATGTCCAg  >  2:1097184/1‑149 (MQ=12)                                          cccACCAGACACTGGCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTACACATCAAGGCTCAATGTTCAg  <  2:681565/149‑1 (MQ=17)                                          |                                                                                                                                                      CCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC‑TCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTACACATCAAGGCTCAATGTTCAG  >  NC_000913_3_pae_pgi/3424504‑3424693

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑