| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | 1097372 = | NA (NA) | 9 (0.130) | 9/272 | 7.1 | 14.3% | intergenic (+543/+193) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_pae_pgi | 1097531 = | 55 (0.810) | intergenic (+702/+34) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTA‑TACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGA > NC_000913_3_pae_pgi/1097437‑1097677 | aCTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCg > 2:962958/1‑149 (MQ=31) cTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa > 1:516530/1‑149 (MQ=32) tGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTCTAAAAATGGCGGTGAGGGGGGGATTCGaa > 2:662886/1‑149 (MQ=17) ttCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGCGCTCTTCTTTAAATATGGCGGTGCGGCGGGGATTCGcccccc > 2:553465/1‑149 (MQ=11) aCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc < 1:1109351/144‑1 (MQ=34) aCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc < 1:1110058/144‑1 (MQ=34) aCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc > 2:1110058/1‑144 (MQ=34) aCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc > 2:1109351/1‑144 (MQ=34) gTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAAAATGGCGGTGAGGGGGGGATTCGAACCCCCGATAc > 1:1086709/1‑149 (MQ=255) tCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 2:516530/149‑1 (MQ=255) ccAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGcc < 1:390258/149‑1 (MQ=255) aaCTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGGTACGTTGCCGt > 1:974996/1‑149 (MQ=255) aaCTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCgg > 2:587674/1‑148 (MQ=255) aaCTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGt < 1:78637/149‑1 (MQ=255) aaCTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGt < 1:758023/149‑1 (MQ=255) gCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAAGTGGGGGTTCGAACCCCCGATACGTTGCCTTA‑TACACACttt > 1:834251/1‑149 (MQ=255) ccAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGta‑ta < 2:310352/140‑1 (MQ=255) ccAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGta‑ta > 1:310352/1‑140 (MQ=255) gTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGAAGCGAACCCCCGCTACGCGGCCGTAGTAC‑CACCTTCCAg > 1:582583/1‑149 (MQ=11) tGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTA‑TACACACTTTCCAGGc < 2:530621/149‑1 (MQ=255) gTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TC‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCCTC‑TACACACTTTCCAGGCg > 2:895313/1‑149 (MQ=255) tCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc > 2:1117234/1‑127 (MQ=255) tCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:1117234/127‑1 (MQ=255) cccGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTA‑TACACACTTTCCAGGCGTGCTCCt > 1:1099367/1‑149 (MQ=255) cccGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTA‑TACACACTTTCCAGGCGTGCTCCt > 2:15371/1‑149 (MQ=255) ccGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTA‑TACACACTTTCCAGGCGTGCTCCtt > 1:569158/1‑149 (MQ=255) ccGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTA‑TACACACTTTCCAGGCGTGCTCCtt > 1:1110226/1‑149 (MQ=255) tCGCGGTTTCTTATCCCCCCGGTTTGTGCAATTTACGAAAAAAAAGCCCGTACTTTCG‑TA‑CTAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTA‑TACACACTTTCCAGGCGTGCTCCTTCAGc < 2:157976/149‑1 (MQ=17) ggggCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTA‑TACACACTTTCCAGGCGTGCTCCTTCAGCCa > 2:1119455/1‑149 (MQ=255) tctcATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTA‑TACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGa < 2:95886/149‑1 (MQ=255) tcATCCCCCCGGTGTGTGCAATAGACGAAAAACAA‑ACCGT‑CGTTCGCTACCGAGCTCTTCTTTAAATATGGCGGGGAGGGGGGGATTCGACCCCCCGATACGTTGCCGTA‑TAAAAACTTTCCAGGCTTGCCCCTTCACCCCCCCGGaca > 2:815707/1‑149 (MQ=9) ctcacGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTACTGTAACCCGGGCGGCGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTA‑TACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCGCa < 2:133557/145‑1 (MQ=14) cccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGta‑ta < 1:180992/105‑1 (MQ=255) cccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGta‑ta > 2:180992/1‑105 (MQ=255) cccGGGGTGTGCAATATACGAAAAAAAAGCCCGTACTGTCT‑TA‑CGAGCTCTTCTGTAAATAGGACGGGGAGGGGGGGATTAGAAGACCCGGTACATGTCCGTA‑TACGCACTTTCAAGTAATGCTCCCTACGCCACTAGGACACCTCagc > 2:16652/1‑147 (MQ=9) tgtctgtgTAATACACGAAAAAAAAGCCCGTACCTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTA‑TACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCaaa < 2:534191/145‑1 (MQ=255) tgtgtgCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTA‑TACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAAtt < 1:15371/149‑1 (MQ=255) gtgCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTA‑TACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTc < 2:1099367/149‑1 (MQ=255) gtgCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTA‑TACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTc < 2:970773/149‑1 (MQ=255) tgCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTA‑TACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCg > 2:974117/1‑149 (MQ=255) tgCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCACTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTA‑TACACACTTTCTAGTCATGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTca > 1:943310/1‑148 (MQ=255) gCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTA‑TACACACTTTCCAAACGTGCCCCTTCAGCCACTCGGACACCTCCCCAAATTGTCGt > 2:240427/1‑149 (MQ=255) atatACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTA‑TACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACGTCACCAAATTGTCGTTcc > 1:317054/1‑149 (MQ=255) aCGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTA‑TACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTc < 1:840109/149‑1 (MQ=255) gAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGTTCGGAGCATAGATACGTTGACGTC‑TACAAGCATACCAGGCGTCCTCCTTTAGCGACCCGGACACCCCACCAAATCGTCTTTCCTGTCtt > 2:106540/1‑149 (MQ=14) gAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc < 2:10932/62‑1 (MQ=31) gAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc > 1:10932/1‑62 (MQ=31) gAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTA‑TACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGt > 2:329687/1‑137 (MQ=37) gAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTA‑TACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGt < 1:329687/137‑1 (MQ=34) gAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTA‑TACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGAAACCTCACCAAATTGTAGTTCCTGTCtt > 1:994733/1‑149 (MQ=255) aaaaaaaaGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTA‑TACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTg < 1:553465/149‑1 (MQ=255) aaaaaaGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTA‑TACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCt < 2:1143759/149‑1 (MQ=255) aaaaGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGcc < 1:870624/76‑1 (MQ=40) aaaaGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGcc > 2:870624/1‑76 (MQ=255) aaaGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTA‑TACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGa > 2:722942/1‑149 (MQ=255) | ACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCG‑TA‑CGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTA‑TACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGA > NC_000913_3_pae_pgi/1097437‑1097677 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |