| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | = 4094632 | 79 (1.510) | 4 (0.080) | 4/268 | 7.7 | 4.8% | noncoding (317/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913_3_pae_pgi | = 4284634 | NA (NA) | noncoding (73/77 nt) | REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACTGTTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCG > NC_000913_3_pae_pgi/4094486‑4094780 | aCTGTTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCTGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGc < 1:24170/149‑1 (MQ=37) tGTTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCt > 1:747092/1‑149 (MQ=38) ttGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTTTTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGa < 2:744796/149‑1 (MQ=17) cGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCg > 1:486916/1‑149 (MQ=35) cGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATCCCCGCTGCg > 2:705770/1‑149 (MQ=255) gACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGa > 2:670029/1‑149 (MQ=35) aGGCCAGATAAGGCTCCTGGGCCGCAACCGGCCATACCTGACAGGTGGGACGCTGTAGCGTCTTATCAGGCCTACAACGATTGCCGACCTGTAGGCCGGATAATGCACGTGGGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTc < 2:230229/149‑1 (MQ=11) ggCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGAGCC‑GCATACGGCAATCAATGCCTGATGCGACGCTGTcg > 1:904872/1‑149 (MQ=25) ccGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTcgcg < 1:670029/149‑1 (MQ=35) ggATAAGGCACTTGTGCAGCATCCAGCAATCAATGCCTGATACGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCAACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGCCAATCAATGCCTGATGCGACACTGTcacgcc > 2:343851/1‑147 (MQ=11) gCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCCATCAATGCCGAATGCGAGACTGACGCGTCTTATCat > 1:178500/1‑148 (MQ=11) aCTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGc < 1:948273/149‑1 (MQ=32) ttGTGCCGCATCCGGCAATAAATCACTTTTGCAACGCTATCGCGTCTTATCAGGCCTACAACTATTGCCAACCCGTAGGCCGGATAAGGCACGTGTGCC‑GCATCCGGCAATAAATGCCTAGTGCGCCGCCGTCTCGTCTTATCatcctc > 2:412069/1‑144 (MQ=11) gCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACaa > 2:651591/1‑149 (MQ=32) cGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCa < 2:488067/138‑1 (MQ=32) cGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACt > 1:961599/1‑149 (MQ=32) cATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTCTCAGGCCTACAACTGt > 1:358037/1‑149 (MQ=17) aTCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGtt < 2:597553/149‑1 (MQ=32) tCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGttt < 2:737445/149‑2 (MQ=17) ccGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGc < 1:267896/149‑1 (MQ=32) ccGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGc < 1:604239/149‑1 (MQ=32) ggCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCg > 1:484994/1‑149 (MQ=32) aatcaatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGAcc > 1:609689/1‑149 (MQ=32) caatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGt > 1:647695/1‑149 (MQ=35) atGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGCTGCGACGCTGTCGCGTCTTATCAGACCTCCAGCAGTTGCCGACCCGTac > 2:152454/1‑148 (MQ=11) atGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGc < 1:146517/139‑1 (MQ=33) atGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGc > 2:146517/1‑139 (MQ=33) ccTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCGACAACTGTTGCCGACCCGTAGGcc > 1:379385/1‑149 (MQ=25) gATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGa < 1:651591/149‑1 (MQ=35) gACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTCTCAGGCCTACAACTGTTGCGGACCCGAACGCCCGAtgcgg > 1:279525/1‑145 (MQ=11) gACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACGGTTCCCCACCGCTAGGCCGGATAAgg > 1:580737/1‑149 (MQ=11) aCGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGgc < 1:323369/149‑1 (MQ=35) gCTGTCGCTTCTTATCAGGCCTACAACTATCGCCGCCCTGTAGGCCGGATAAGGCACGTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGgcgc < 1:734188/149‑1 (MQ=255) gCTGTCGCGTCTTATCAGGCCTACAACTTTTGCCGGCCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGgcgc < 1:734125/149‑1 (MQ=25) gTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTcg > 2:861209/1‑149 (MQ=39) tCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCAcgc > 1:99350/1‑149 (MQ=38) gcgTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATACGGCAGTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCgcgc > 1:677216/1‑149 (MQ=255) gcgTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGc > 1:969130/1‑119 (MQ=33) gcgTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGc < 2:969130/119‑1 (MQ=32) gTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑TGATCCGGCAGTCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGcgccg > 1:278321/1‑149 (MQ=255) tCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGc < 2:614480/98‑1 (MQ=33) ggCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCa < 2:747092/149‑1 (MQ=255) gCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATg < 1:285258/63‑1 (MQ=37) gCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATACGGCGCTCGAGCCGCATCCGGCAg > 1:883678/1‑149 (MQ=255) gCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATACGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGACGGGATAAGGCGATAGCGCCGCATCCGGCAg > 1:797586/1‑149 (MQ=14) ccTACACTTATTGCCGACCTGTAGGATGGATAGGGCAC‑TGTGCCTGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAgt < 1:179421/149‑1 (MQ=14) ccTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAgt < 2:486916/149‑1 (MQ=255) ccTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAgt > 1:567443/1‑149 (MQ=255) tACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTc < 1:647005/130‑1 (MQ=40) tACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTc > 2:647005/1‑130 (MQ=40) tACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCCTCCGGCCgtgt > 2:48307/1‑149 (MQ=255) aaCTATTGCCGACCTGTAGGCCGGATAAGGAACTAGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTa > 2:209976/1‑149 (MQ=255) tATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTAccc < 2:765454/149‑1 (MQ=255) aCCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTg < 1:19663/89‑1 (MQ=33) aCCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTg > 2:19663/1‑89 (MQ=35) aCCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCa < 1:364639/131‑1 (MQ=255) aCCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCa > 2:364639/1‑131 (MQ=255) ccTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCTTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACt < 1:902536/149‑1 (MQ=255) aGGCCGGATAAGGCACTGGGGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCaaaa < 2:47737/149‑1 (MQ=255) gCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAgg < 1:151258/103‑1 (MQ=38) gCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAAtt > 1:929573/1‑149 (MQ=255) ccGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAAttt < 1:842234/149‑1 (MQ=255) gCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTGCCCGCGGCGACTCAAAATTTCTTTCTCAt > 2:514337/1‑149 (MQ=255) aCTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATaa < 2:609689/149‑1 (MQ=255) aCTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATaa < 1:701833/149‑1 (MQ=255) aCTTGGGCC‑GCAGCCGCCAATCAATGCCTGGTGCGACGCTGTCGCGTCGTATCAGTCCTACAACTGTTGCCGACCCGTAGGCCGGATAATGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATaa < 1:199596/149‑1 (MQ=37) ttGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAAtttct > 1:512466/1‑138 (MQ=255) ttGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAAtttct < 2:512466/138‑1 (MQ=255) ttGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGATCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGc > 1:918961/1‑149 (MQ=255) gCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGc < 1:702674/149‑1 (MQ=255) cc‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCa < 1:669580/149‑1 (MQ=255) c‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCAc > 2:633301/1‑149 (MQ=255) aTCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGct < 2:647695/149‑1 (MQ=255) cGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCtctc > 2:559834/1‑149 (MQ=255) ggCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGc < 1:218001/67‑1 (MQ=37) ggCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTcc > 1:904562/1‑149 (MQ=255) ggCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCCCACGCTCTcc > 2:746282/1‑149 (MQ=255) gCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCa < 1:650862/149‑1 (MQ=255) ccaagcaatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCa < 1:705770/144‑1 (MQ=255) atcaatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGcc < 2:567443/149‑1 (MQ=255) atcaatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGcc < 1:962915/149‑1 (MQ=255) atGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGAccc < 1:811911/53‑1 (MQ=31) tGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGACCGTGTAAGACGCTCGCTCCGCATCCGGCAGTGTTTAACCGCGGCGACTCAAAATTTGTTTCTCATAAGCCCGCACGCTCTCCAGCCATGCg > 1:277085/1‑149 (MQ=25) | ACTGTTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCG > NC_000913_3_pae_pgi/4094486‑4094780 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |