| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_pgi | 4,295,320 | 0 | C | T | 22.4% | 169.2 / 51.3 | 98 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Reads supporting (aligned to +/- strand): ref base C (44/32); new base T (10/12); total (54/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.38e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.34e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGC > NC_000913_3_pae_pgi/4295174‑4295466 | cGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGc < 2:442576/149‑1 (MQ=17)cGGATAAGGCCTTAATGCCGCATCCTACATCATCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTATGTCGGATAAGGCGTTTTCGCCGCATCCGACATCAACGc < 2:853677/149‑1 (MQ=11) tgtAAGGCGTTTATGCCCCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCt < 2:76019/147‑1 (MQ=12) aTAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTg > 1:442576/1‑149 (MQ=32) ggCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGc > 2:373575/1‑149 (MQ=17) ggCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGc > 1:577111/1‑149 (MQ=32) ggCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACAGCAACGCCTGATGc > 1:708307/1‑149 (MQ=17) gCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTTCGTGGTGGAACCCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCT‑TGc < 1:472130/149‑1 (MQ=11) gCCCCATCCCACATCAACGCCTGATGCGACGCTTAACGCTTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGc < 1:828308/149‑1 (MQ=255) ccGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCT‑TGcc < 1:474267/149‑1 (MQ=21) tCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCT‑TGCCGCGTc > 1:604566/1‑149 (MQ=25) cGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCtt > 1:650846/1‑149 (MQ=38) gACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGCCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCT‑TGCCGCGTCTTa > 2:668314/1‑149 (MQ=21) gACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑GGCCGCGTCTTa > 1:143132/1‑149 (MQ=37) aCATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCT‑TGCCGCGTCTTAt < 1:236803/149‑1 (MQ=21) cATCAACGCCTGATGCGACGCTTCACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATc < 2:929196/149‑1 (MQ=38) aTCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCT‑TGCCGCGTCTTATcc > 1:516873/1‑148 (MQ=25) tCAATGACTGATGCGACGTTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCT‑TGCCGCGTCTTATCAg < 1:48951/149‑1 (MQ=255) cAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCTATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCT‑TGCCGCGTCTTATCAgg > 1:642548/1‑149 (MQ=21) cAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCT‑TGCCGCGTCTTATCAgg < 1:324005/149‑1 (MQ=21) cAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCT‑TGCCGCGTCTTATCAgg < 1:111950/149‑1 (MQ=21) aaggtcTGATTCGACGCTTGAGGTGTCTTATCAGGCCTAGGCCCGTCAGCGCAATAGCCTGATTTAGCGTGATTTGGTAGGTCGGATAAGGCGTTTGCGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGc < 2:869368/144‑1 (MQ=11) aaCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGc > 1:311479/1‑149 (MQ=21) aCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGcc > 1:927265/1‑149 (MQ=21) aCGCCTGATGAGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGcg > 1:944896/1‑148 (MQ=37) cGCCTGATTTGTCGCTAAAGGTGTCTTATCAGGCCTACGCCAGACAGCGCAAAAGCCTCATTTCGTGTAATTTTGTAGGTCGACTCAGGCGTTTACGCCGCATCCGCCACCACTGCCTGCTGCGATGCT‑TGCCGCGTTTTATCAGTCCt < 2:577111/149‑1 (MQ=2) gCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTa > 1:671389/1‑149 (MQ=25) gCCAGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCTCATCCGACATCAATGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTa > 2:608359/1‑149 (MQ=255) tGATGCGGCGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTatct > 2:281109/1‑146 (MQ=12) gACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACa > 1:707298/1‑149 (MQ=39) gCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGTATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCCGCCAgcg > 1:811177/1‑149 (MQ=255) ttAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCtt < 2:216445/125‑1 (MQ=40) ttAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCa < 2:707298/149‑1 (MQ=39) ttAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCAGCGTCtt > 1:216445/1‑125 (MQ=38) tttcgcgTCTTTTCGGGTCTAAGCCTGACAGCGCAATTGCCTGATTCAGCGTGATTTTGTAGGGTGGGTAAGGCGTTTACGCCGCGTCCGACATCAGCGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCaa < 2:664563/146‑1 (MQ=11) aaCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCTAGACAGCGCAAt > 2:900149/1‑149 (MQ=37) cgcgTCTTATCAGGCCTACCCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATACGACGCT‑TGCCGCGTCTTCTCAGGCCTACCCCAACCAGCGCAATac > 2:473148/1‑148 (MQ=11) gcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATg > 2:110507/1‑102 (MQ=32) cgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCATACAGCGCAATATcc > 1:77688/1‑149 (MQ=255) cgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGcc > 1:724140/1‑149 (MQ=38) tCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGa < 2:321799/97‑1 (MQ=33) aGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTCTGCC‑CGTCCTATGAAGCCTACGCCAGGCCGCGCCGGAGGCTGAtttcac > 1:689587/1‑146 (MQ=1) ggCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGt > 2:197684/1‑106 (MQ=255) ggCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGt < 1:197684/106‑1 (MQ=255) gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCT‑TGCTGCGTCTTATc < 1:944159/111‑1 (MQ=255) gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATc > 2:944159/1‑111 (MQ=40) tACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAt < 1:385536/149‑1 (MQ=38) tACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TACCGCGTCTTATCAGGCCTACGCTAGACAGTGCAATAGCCTGGTGTAGCGTgct > 2:687488/1‑147 (MQ=11) gtcAGAGAGCGCAATAGCCTGATTGAGCGTGATTTTGTAGGTGGGATAGGGCGTTTCCGCCGGGTCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAtttt < 2:782709/147‑1 (MQ=11) ccAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGcc > 1:566433/1‑109 (MQ=255) ccAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTa < 2:36669/138‑1 (MQ=38) ccAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTa > 1:36669/1‑138 (MQ=37) cAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCa > 1:696232/1‑115 (MQ=40) aGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCTTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTa < 1:407578/149‑1 (MQ=37) gcgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATGAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCg < 1:190308/149‑1 (MQ=38) ccTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATGGCCTGATTTAGCGTGAACTGGTAGGACGGCTAAGGCg > 2:307907/1‑149 (MQ=11) ccTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTc > 2:685082/1‑139 (MQ=39) ccTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTc < 1:685082/139‑1 (MQ=40) ccTGATTTAGCGTGATTTTGGAGGGCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCg < 1:686757/149‑1 (MQ=255) aTTTAGCGTGATTTTGTAGGTCGGATAAGGCTTTCGTTCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGCGTTAGCGTCATTTTGTAGGTCGCATAAGCCGTTTa > 2:790561/1‑149 (MQ=11) aTTGAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTa < 1:823682/149‑1 (MQ=38) cGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGAtt < 1:671324/110‑1 (MQ=255) cGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGAtt > 2:671324/1‑110 (MQ=255) gTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGc < 2:845024/66‑1 (MQ=40) gTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGc > 1:845024/1‑66 (MQ=40) tGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTat < 2:504505/84‑2 (MQ=255) tGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTAc > 1:504505/1‑84 (MQ=255) tGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCg > 1:492991/1‑137 (MQ=40) tGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCg < 2:492991/137‑1 (MQ=39) aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCa > 1:835021/1‑86 (MQ=255) ttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCATACACCGCAATAGCCTGCTTTCGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCgcc < 1:672486/149‑3 (MQ=255) ttCGGATAAGGCGTTTACCCCGCATCCGACATGAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAAc < 1:44221/148‑1 (MQ=255) gTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCT‑TGcc < 1:613647/55‑1 (MQ=255) gTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGcc > 2:613647/1‑55 (MQ=255) gTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATg < 1:908449/132‑1 (MQ=40) gTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATg > 2:908449/1‑132 (MQ=40) tCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTCTGCCGCATCCGACCTCaagg > 1:856051/1‑147 (MQ=255) tCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGcc > 2:900744/1‑133 (MQ=37) tCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGcc < 1:900744/133‑1 (MQ=38) tCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACg > 2:886482/1‑149 (MQ=38) ggATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGcc > 1:728565/1‑149 (MQ=39) tAAGGCGTGTACGCCGCATAAGGTATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGa < 2:711414/149‑1 (MQ=11) gTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGAc > 1:582428/1‑149 (MQ=38) tttACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGCCATCAACCCCTGATGCgccc > 2:207544/1‑146 (MQ=255) gttctgccgcACTCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCGGGCCTACGCCAGACAGCGCAAGAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACg < 2:143132/144‑1 (MQ=11) ttACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGc < 2:650846/149‑1 (MQ=37) tACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCt > 1:582810/1‑149 (MQ=38) tcagcAGCCGATATCTACGCCTGATGCGACGCT‑TGCGGCGTCTTATCAGGCCTACGCCAGCCAGCGCTACAGCCCGATCTTGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCAGCCGACATCAACGCCTGATGCGACGCTTaa < 2:469554/146‑1 (MQ=11) ccccacccGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAAc < 1:214188/143‑1 (MQ=21) cgcATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGCTAAGGCGTTTATGCCGCATCCGACATAAACGCCTGATGCGCCGCTTATcg > 2:622148/1‑149 (MQ=255) cgcATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATCGGACGCTTCAcg > 2:317298/1‑149 (MQ=255) cGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCtt > 2:472130/1‑149 (MQ=35) aTCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATTGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTCACGCGTCTTATCa > 2:324005/1‑149 (MQ=21) aTCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCa < 1:307907/149‑1 (MQ=34) tCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAg < 1:751450/149‑1 (MQ=33) agcGCCTGATGCGATGCT‑TGCCGTGTCTTATCAGGCCTAGGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCCCCCCCGAACTCAAACCCAGACGCAACGCTTAACGCGTCTTATCAGGc < 2:480144/147‑1 (MQ=11) aaCGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGCCACTGCAATAGCGTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTACCGCGTCTTATCAGGc > 1:189854/1‑149 (MQ=11) aCGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATcc < 1:617613/106‑1 (MQ=31) aCGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATcc > 2:617613/1‑106 (MQ=31) | CGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCT‑TGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGC > NC_000913_3_pae_pgi/4295174‑4295466 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |