New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_pgi 2906594 =124 (1.230)16 (0.180) 15/236 8.3 12.9% intergenic (+11/+49) ygcG/eno TPM domain protein, putative phosphatase/enolase
?NC_000913_3_pae_pgi 2906624 = 105 (1.160)intergenic (+41/+19) ygcG/eno TPM domain protein, putative phosphatase/enolase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 128 total aligned reads displayed.

TTATGTGTACTTCAGAAAAGAGCATCTGGTAGAAGTTATCATTCAGACAACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCTTTTTCGCCCAGAGCTTCTTCGATACGAATCAGCTGGTTGTATTTAGCAACACGGTCA  >  NC_000913_3_pae_pgi/2906446‑2906742
                                                                                                                                                    |                                                                                                                                                     
ttATGTGTACTTCAGAAAAGAGCATCTGGTAGAAGTTATCATTCAGACAACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATaaa                                                                                                                                                      <  4:441831/150‑1 (MQ=255)
     tgtACTTCAGAAAAGAGCATCTGGTAGAAGTTATCATTCAGACAACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATg                                                                                                                                                 >  4:519566/1‑150 (MQ=255)
      gtACTTCAGAAAAGAGCATCTGGTAGAAGTTATCATTCAGACAACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGc                                                                                                                                                >  1:996018/1‑150 (MQ=255)
        aCTTCAGAAAAGAGCATCTGGTAGAAGTTATCATTCAGACAACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCa                                                                                                                                              <  1:955496/150‑1 (MQ=255)
           tCAGAAAAGAGCATCTGGTAGAAGTTATCATTCAGACAACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGcc                                                                                                                                           >  3:292590/1‑150 (MQ=255)
             aGAAAAGAGCATCTGGTAGAAGTTATCATTCAGACAACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑Cg                                                                                                                                        <  1:6411/150‑1 (MQ=255)
               aaaaGAGCATCTGGTAGAAGTTATCATTCAGACAACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGa                                                                                                                                      <  3:519566/150‑1 (MQ=255)
               aaaaGAGCATCTGGTAGAAGTTATCATTCAGACAACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGa                                                                                                                                      <  3:680051/150‑1 (MQ=255)
                aaaGAGCATCTGGTAGAAGTTATCATTCAGACAACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAg                                                                                                                                     <  1:847076/150‑1 (MQ=255)
                  agagCATCTGGTAGAAGTTATCATTCAGACAACAGCGGTTCCGCTGGAGGCGTAGATAGCGGCGGATTCAGCGGCGGGGGCGGTTCTTCTGAAGGTGGCGGCGCACCCGGCCGCTGGTAACTCAACCAAAAAAAATGCCAGCC‑CGGAGGc                                                                                                                                   <  4:711379/150‑1 (MQ=255)
                        tCTGGTAGAAGTTATCATTCAGACAACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCAt                                                                                                                             <  3:272571/150‑1 (MQ=255)
                        tCTGGTAGAAGTTATCATTCAGACAACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCAt                                                                                                                             <  1:805374/150‑1 (MQ=255)
                         cTGGTAGAAGTTATCATTCAGACCACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAAGCGGCGGCGCATCCGGCCGCTGGGAACTCAAACATAAAAAATGCCAGCC‑CGGAGGCTGGCAtt                                                                                                                            >  2:120042/1‑150 (MQ=255)
                          tGGTAGAAGTTATCATTCAGACAACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCAttt                                                                                                                           >  2:570158/1‑150 (MQ=255)
                           ggTAGAAGTTATCATTCAGACAACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCCTCCG‑GGCTGGCAtttt                                                                                                                          <  2:982691/150‑1 (MQ=255)
                           ggTAGAAGTTATCATTCAGACAACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑TCCGGGCTGGCAtttt                                                                                                                          <  4:112971/150‑1 (MQ=255)
                              aGAAGTTATCATTCAGACAACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTaa                                                                                                                       <  2:876394/150‑1 (MQ=255)
                                aaGTTATCATTCAGACAACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAAt                                                                                                                     <  1:846091/150‑1 (MQ=255)
                                  gTTATCATTCAGACAACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCTGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCa                                                                                                                   <  2:996322/150‑1 (MQ=255)
                                  gTTATCATTCAGACAACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCa                                                                                                                                              >  1:733874/1‑124 (MQ=255)
                                  gTTATCATTCAGACAACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCa                                                                                                                   <  1:88132/150‑1 (MQ=255)
                                  gTTATCATTCAGACAACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCa                                                                                                                   >  3:329752/1‑150 (MQ=255)
                                  gTTATCATTCAGACAACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGACGATGGTAACTCAGCCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCa                                                                                                                   <  1:291008/150‑1 (MQ=255)
                                   ttATCATTCAGACAACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAg                                                                                                                  >  3:480871/1‑150 (MQ=255)
                                    tATCATTCAGACAACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGa                                                                                                                 <  1:1168109/150‑1 (MQ=255)
                                    tATCATTCAGACAACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGa                                                                                                                 >  2:178001/1‑150 (MQ=255)
                                        aTTCAGACAACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATaaa                                                                                                             >  2:1170874/1‑150 (MQ=255)
                                        aTTCAGACAACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATaaa                                                                                                             >  2:1170867/1‑150 (MQ=255)
                                        aTTCAGACAACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGAGTTAGCGGCGGGGGCGGATCTTCTGGAGGTGGCGGCGCAGCCGGCCGCCGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATaaa                                                                                                             >  4:547870/1‑150 (MQ=255)
                                         ttCAGACAACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAag                                                                                                            >  1:734159/1‑150 (MQ=255)
                                          tCAGACAACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATaaa                                                                                                             >  1:881362/1‑148 (MQ=255)
                                             gACAACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAagtcag                                                                                                        >  1:446047/1‑150 (MQ=255)
                                              cctccaGCGGAACCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAagtcagg                                                                                                       >  4:254162/5‑149 (MQ=255)
                                                aacaGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGc                                                                                                                                                >  2:978200/1‑108 (MQ=255)
                                                  caGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTa                                                                                                   >  4:46531/1‑150 (MQ=255)
                                                  caGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTa                                                                                                   >  1:1043891/1‑150 (MQ=255)
                                                   aGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTAt                                                                                                  >  2:775303/1‑150 (MQ=255)
                                                      ggTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGcc                                                                                               <  2:36790/150‑1 (MQ=255)
                                                       gTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCt                                                                                              >  1:986841/1‑150 (MQ=255)
                                                            gCTGGAGGCTCAGATAGCGGCGGGGTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCTCTGGGATCGCGACCATAAAAAAAGCCAGCT‑CGGAGGCTGGCATTTTGAAATCAGAGAAAGTCAGTCGTATGCCTGGccg                                                                                         >  3:550037/1‑149 (MQ=255)
                                                              tGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGa                                                                                                                 <  2:220780/124‑1 (MQ=255)
                                                              tGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGa                                                                                                                 >  1:220780/1‑124 (MQ=255)
                                                              tGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCttt                                                                                       <  2:78088/150‑1 (MQ=255)
                                                                     tCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATctct                                                                                <  2:857939/150‑1 (MQ=255)
                                                                     tCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATctct                                                                                <  2:1007374/150‑1 (MQ=255)
                                                                      cataTAGCGTCGGAGTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGTCCTTTGATCTCtt                                                                               <  2:648466/147‑1 (MQ=255)
                                                                           aGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGa                                                                          <  1:178001/150‑1 (MQ=255)
                                                                             cggcggATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATaaa                                                                                                                                                      <  2:44361/73‑1 (MQ=255)
                                                                               gcggATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATa                                                                                                               <  4:603266/109‑1 (MQ=255)
                                                                               gcggATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGt                                                                      >  3:502237/1‑150 (MQ=255)
                                                                                cggATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGACAGCA‑AGGAGGATGAACTTATTAAATACAATCAAGTAAGCTTTATGACTGGCCTTTGATCTCTTTACGACAGtt                                                                     >  3:365220/1‑150 (MQ=255)
                                                                                  gATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCGAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGt                                                                   <  2:1025932/150‑1 (MQ=255)
                                                                                   aTTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTa                                                                  <  1:99658/150‑1 (MQ=255)
                                                                                        gcggcgGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTg                                                             <  4:329752/150‑1 (MQ=255)
                                                                                           gcggGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCtt                                                          >  2:1111143/1‑150 (MQ=255)
                                                                                           gcggGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCtt                                                          >  3:132011/1‑150 (MQ=255)
                                                                                               gggCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCTTTTTc                                                      <  1:1170874/150‑1 (MQ=255)
                                                                                               gggCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCTTTTTc                                                      <  4:502237/150‑1 (MQ=255)
                                                                                                  cGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTa                                                                  <  4:703032/135‑1 (MQ=255)
                                                                                                  cGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTa                                                                  >  3:703032/1‑135 (MQ=255)
                                                                                                   ggTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCTTTTTCGccc                                                  >  3:461747/1‑150 (MQ=255)
                                                                                                     ttcttcTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCTTTTTCGCCCag                                                <  2:714717/150‑1 (MQ=255)
                                                                                                      tcttctGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCTTTTTCGCCCaga                                               <  2:394270/150‑1 (MQ=255)
                                                                                                      tcttctGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCTTTTTCGCCCaga                                               <  4:480871/150‑1 (MQ=255)
                                                                                                      tcctctGGAGGTCGCGGCGCAGCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAATTCAGGCTTATGTCTGGCCTTTGCTCTCTTTACGACCGTTGTACGGTGCTTTTTCGCCCaga                                               <  4:325205/147‑1 (MQ=255)
                                                                                                       cttctGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCg                                                                       >  1:37149/1‑125 (MQ=255)
                                                                                                       cttctGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCg                                                                       <  2:37149/125‑1 (MQ=255)
                                                                                                          ctGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCa                                                                                                                              <  1:711024/67‑1 (MQ=255)
                                                                                                          ctGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCa                                                                                                                              >  2:711024/1‑67 (MQ=255)
                                                                                                          ctGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCTTTTTCGCCCAGAGctt                                           >  3:530989/1‑150 (MQ=255)
                                                                                                          ctGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCTTTTTCGCCCAGAGctt                                           >  3:252491/1‑150 (MQ=255)
                                                                                                           tGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATctct                                                                                <  2:222702/112‑1 (MQ=255)
                                                                                                             gAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAGCCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCTTTTTCGCCCAGAGcttctt                                        >  2:1082888/1‑150 (MQ=255)
                                                                                                             gAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAagt                                                                                                           <  2:716395/83‑1 (MQ=255)
                                                                                                               ggTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGGGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCTTTTTCGCCCAGAGCTTCTTCg                                      <  2:737001/150‑1 (MQ=255)
                                                                                                               ggTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGCGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTAAGCTCTTTACGACCGTTGTACGGTGCTTTTTCGCCCAGGGCTTCTTCg                                      <  2:872744/150‑1 (MQ=255)
                                                                                                                 tGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCTTTTTCGCCCAGAGCTTCTTCGAt                                    <  1:570158/150‑1 (MQ=255)
                                                                                                                  ggcggcGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCTTTTTCGCCCAGAGCTTCTTCGATa                                   <  3:493887/150‑1 (MQ=255)
                                                                                                                     ggcgCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCTTTTTCGCCCAGAGCTTCTTCGATACGa                                >  1:975719/1‑150 (MQ=255)
                                                                                                                     ggcgCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCTTTTTCGCCCAGAGCTTCTTCGATACGa                                >  1:734752/1‑150 (MQ=255)
                                                                                                                      gcgcATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCAtt                                                                                                                            >  2:704645/1‑57 (MQ=255)
                                                                                                                      gcgcATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCAtt                                                                                                                            <  1:704645/57‑1 (MQ=255)
                                                                                                                       cgcATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCTTTTTCGCCCAGAGCTTCTTCGATACGAAt                              <  3:699230/150‑1 (MQ=255)
                                                                                                                           tCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCTTTTTCGCCCAGAGCTTCTTCGATACGAATCAGc                          >  1:671231/1‑150 (MQ=255)
                                                                                                                                ccGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCTTTTTCGCCCAGAGCTTCTTCGATACGAATCAGCTGGtt                     <  4:716830/150‑1 (MQ=255)
                                                                                                                                 cGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCTTTTTCGCCCAGAGCTTCTTCGATACGAATCAGCTGGTTg                    >  1:716609/1‑150 (MQ=255)
                                                                                                                                     ggTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCTTTTTCGCCCAGAGCTTCTTCGATACGAATCAGCTGGTTGTAtt                <  2:996018/150‑1 (MQ=255)
                                                                                                                                      gTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCTTTTTCGCCCAGAGCTTCTTCGATACGAATCAGCTGGTTGTAttt               <  1:481192/150‑1 (MQ=255)
                                                                                                                                       tAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCCTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCTTTTTCGCCCAGAGCTTCTTCGATACGAATCAGCTGGTTGTATTTa              <  3:254162/150‑1 (MQ=255)
                                                                                                                                        aaCTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCTTTTTCGCCCAGAGCTTCTTCGATACGAATCAGCTGGTTGTATTTAg             <  3:547870/150‑1 (MQ=255)
                                                                                                                                           tCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGa                                                                                                                 <  1:295638/47‑1 (MQ=255)
                                                                                                                                           tCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGa                                                                                                                 >  2:295638/1‑47 (MQ=255)
                                                                                                                                             aaCCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTg                                                                                      <  3:412576/72‑1 (MQ=255)
                                                                                                                                             aaCCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCTTTTTCGCCCAGAGCTTCTTAGATACGAATCAGCTGGTTGTATTTAGCAaca        >  2:742030/1‑150 (MQ=255)
                                                                                                                                              aCCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCTTTTTCGCCCAGAGCTTCTTCGATACGAATCAGCTGGTTGTATTTAGCAacac       >  1:159189/1‑150 (MQ=255)
                                                                                                                                               gatttaaaaaTGCCAGCCTCCG‑GGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCTTTTTCGCCCAGAGcttctt                                        <  2:646726/111‑1 (MQ=38)
                                                                                                                                                 aTAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCTTTTTCGCCCAGAGCTTCTTCGATACGAATCAGCTGGTTGTATTTAGCAACACGGt    <  1:1025437/150‑1 (MQ=255)
                                                                                                                                                  ttaaaaaTGCCAGCCTCCG‑GGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCTTTTTCGCCCAGAGCTTCTTCGATACGAATCAGCTGGTTGTATTTAGCAACACGGTc   >  2:976768/3‑150 (MQ=255)
                                                                                                                                                  tAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCTTTTTCGCCCAGAGCTTCTTCGATACGAATCAGCTGGTTGTATTTAGCAACACGGTc   >  1:1148581/1‑150 (MQ=255)
                                                                                                                                                   aaaaaaTGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCTTTTTCGCCCAGAGCTTCTTCGATACGAATCAGCTGGTTGTATTTAGCAACACGGTCa  <  2:975719/150‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                     
TTATGTGTACTTCAGAAAAGAGCATCTGGTAGAAGTTATCATTCAGACAACAGCGGTTCCGCTGGAGGCTCAGATAGCGGCGGATTTAGCGGCGGGGGCGGTTCTTCTGGAGGTGGCGGCGCATCCGGCCGCTGGTAACTCAACCATAAAAAATGCCAGCC‑CGGAGGCTGGCATTTTTAAATCAGATAAAGTCAGTCTTATGCCTGGCCTTTGATCTCTTTACGACCGTTGTACGGTGCTTTTTCGCCCAGAGCTTCTTCGATACGAATCAGCTGGTTGTATTTAGCAACACGGTCA  >  NC_000913_3_pae_pgi/2906446‑2906742

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.