| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913_3_pae_pgi | 1,529,203 | C→A | pseudogene (1302/2037 nt) | rhsE → | pseudogene, Rhs family |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_pgi | 1,529,203 | 0 | C | A | 96.2% | 53.9 / NA | 26 | pseudogene (1302/2037 nt) | rhsE | pseudogene, Rhs family |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base A (9/16); minor base G (0/1); total (9/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAATACACACCGGCGCGAAAAGTTCATTTTTACCACTGCGACCACCGGGGCCTGCCGCTGGCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTAT‑GATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAG > NC_000913_3_pae_pgi/1529153‑1529341 | gAATACAAACCGGGGCGGAAAGCTCTTTTGTATCACTGCGTACACCGTGGACTGCCGCTGGTGCTTATGAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTAT‑GATGAATGGGGCAACCAGCTTAATGAGTAGAACCCGCATCACCt < 2:69382/149‑1 (MQ=11) acacCGGCGCGAAAAGCTCATCTTTATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTAT‑GATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCa > 1:995405/1‑149 (MQ=1) aaaGCTCATCTTTATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTAT‑GATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCt > 2:196936/1‑149 (MQ=11) ctCATCTTTATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTAT‑GATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCa > 1:474273/2‑149 (MQ=11) ccATCTTTATCGCTGCGACCACCGGGGACTGCCGCGGGGGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTAT‑GATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAg < 1:199063/148‑1 (MQ=14) ccATCTTTATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTAT‑GATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAg < 1:428578/148‑1 (MQ=255) atctttATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTAT‑GATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTg < 1:154258/122‑1 (MQ=255) atctttATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTAT‑GATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTg > 2:154258/4‑125 (MQ=11) tctttATCACTGGGACCACCGGGGACTGCCGCTGGCGCTTAGCAGCGAAGACGGCAATACGGCGGGGCGCGGGGAGTAT‑GATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGgc < 2:294532/147‑1 (MQ=14) tttATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTAT‑GATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGgcag < 2:776860/149‑1 (MQ=255) ttATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTCTGGAATCATTTTG‑AACCAGCTTAATGCGGTGGACCCGCATCACCTGCACCCGACCTAGCGTCTGCCAGGgcagc < 2:1010643/149‑1 (MQ=9) ttATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTAT‑GATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGGCAGggcggc > 1:90120/1‑149 (MQ=11) ttATCACTGCGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTAT‑GATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCCGGgccgc > 2:966093/1‑149 (MQ=14) cccTGCGACCAACGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTAT‑GATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGgcagcagca < 1:306721/147‑1 (MQ=255) cGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTAT‑GATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCTTGACCGTCTGCCAGGGCAGCAGCatgatg < 2:1016013/149‑1 (MQ=14) cGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTAT‑GATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCatgatg < 1:879505/149‑1 (MQ=255) cGACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTAT‑GATGAATGGGGCAACCAGCTTAATGAGGAGAACCCCCATCACCTGCACCAGCTGTACCGTCTGCCAGGGCAGCAGCatgatg > 1:373706/1‑149 (MQ=255) gACCACGGGGGGCTGCCGCTGGCGAGTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTAT‑GATGAATGGGGCAACCAGCTGAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCAtgatga < 1:959653/149‑1 (MQ=14) gACCACCGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTAT‑GATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCAtgatga < 1:196936/149‑1 (MQ=255) agcaccGGGGACTGCGGCTGGGGCTTAGCAGCGAAGACGGCAATACGGGGTGGCGCGGGGAGTAT‑GATGAATGGGGCAACCAGCTTAAGGAGGAGAACCCGCAGCAACTGCACCAGCCGTACCGCCTGCCAGGGCAGCAGCATGATgag < 2:73880/147‑1 (MQ=14) accacgGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGGGGCGCGGGGAGTAT‑GATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATgag < 1:107704/149‑1 (MQ=255) accaccGGGGACCGCCGCTGGCGTTTACCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTAT‑GATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATgag < 2:795326/149‑1 (MQ=14) cGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTAT‑GATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTg > 1:370044/1‑123 (MQ=255) cGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTAT‑GATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTg < 2:370044/123‑1 (MQ=255) cGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTAT‑GATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAggg < 2:396586/129‑1 (MQ=255) cGGGGACTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTAT‑GATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAggg > 1:396586/1‑129 (MQ=255) | GAATACACACCGGCGCGAAAAGTTCATTTTTACCACTGCGACCACCGGGGCCTGCCGCTGGCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTAT‑GATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAG > NC_000913_3_pae_pgi/1529153‑1529341 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |