New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_pgi	1671424 =	11 (0.600)	3 (0.170)	3/278	2.3	21.0%	coding (49/309 nt)	asr	acid shock‑inducible periplasmic protein
	?	NC_000913_3_vch_pgi	1671444 =	12 (0.680)					coding (69/309 nt)	asr	acid shock‑inducible periplasmic protein

ATTCCCAGGGATATAGTTATTTCAACGGCCCCGCAGTGGGGTTAAATGAAAAAACAAATTGAGGGTATGACAATGAAAAAAGTATTAGCTCTGGTTGTTGCCGCTGCTATGGGTCTGTCTT‑CTGCCGCCTTTGCTGCAGAGACTACGACCACACCTGCTCCGACTGCGACGACCACCAAAGCAGCGCCGGCGAAAACTACACATCATAAAAAACAGCATAAAGCAGCACCTGCCCAGAAAGCGCAGGCGGCTAAAAAGCATCATAAAAATACGAAAGC  >  NC_000913_3_vch_pgi/1671304‑1671581                                                                                                                                              |                                                                                                                                          tgcttttttgccctctgcgctttctgggcaggtgctgctttatgctgttttttatgatgtgttgttttcgccggcgctgctttggtggccgtcgcagtcggagcaggtgtggtcgtagtcTTCTGCCGCCTTTGCTGCAGAGACTACGa                                                                                                                                    >  1:230203‑M1/121‑149 (MQ=255)       aGGGATATAGTTATTTCAACGGCCCCGCAGTGGGGTTAAATGAAAAAACAAATTGAGGGTATGACAATGAAAAAAGTATTAGCTCTGGTTGTTGCCGCTGCTATGGGTCTGTCTT‑CTGCCGCCTTTGCTGCAGAGACTACGACCACAcc                                                                                                                             >  1:63399/1‑149 (MQ=255)                      tCAACGGCCCCGCAGTGGGGTTAAATGAAAAAACAAATTGAGGGTATGACAATGAAAAAAGTATTAGCTCTGGTTGTTGCCGCTGCTATGGGTCTGTCTT‑CTGCCGCCTTTGCTGCAGAGACTACGACCACACCTGCTCCGACTGcgac                                                                                                              <  1:311576/149‑1 (MQ=255)                         aCGGCCCCGCAGTGCGTTTAAATGAAAAAACAAATTGATGGTATGACAAGGAAAAAAGTATTAGCTCTGGTTGTTGCCGCTGCTATGGGTCTGTCTT‑CTGCCGCCTTTGCTGCAGAGACTACGACCACACCTGCTCCGACTGCgacgac                                                                                                           <  1:234092/149‑1 (MQ=255)                                                    aaaCAAATTGAGGGTATGACAATGAAAAAAGTATTAGCTCTGGTTGTTAACAATACTAGGGGTCTGTCTT‑CTGCCGCCTTTGCTGCAGAGACTACGACCACACCTGCTCCGACTGCGACGACCACCAAAGCAGCGCCGGCGAAAACTac                                                                                <  1:9495/149‑1 (MQ=255)                                                                   aTGACAATGAAAAAAGTACTAGCTCTGGTTGTTGCCGCTCCTATGGGACTGTCTT‑CTGCCGCCTTTGCTGCAGAGACTACGACCACACCTGCTCCGACTGCGACGACCACCAAAGCAGCGCCGGCGAAAACTACACATCATAAAAAACa                                                                 <  1:246111/149‑1 (MQ=255)                                                                                      tggtcgtcgcagtcggagcaggtgtggtcgtagtcT‑CTGCCGCCTTTGCTGCAgaga                                                                                                                                          >  1:197106‑M1/36‑57 (MQ=255)                                                                                      tggtcgtcgcagtcggagcaggtgtggtcgtagtcT‑CTGCCGCCTTTGCTGCAgaga                                                                                                                                          <  2:197106‑M1/22‑1 (MQ=255)                                                                                       aGCTCTGGTTGTTGCCGCTGCGATGGGTCTGTCTT‑CTGCCGCCTTTGCTGCAGAGACTACGACCACACCTGCTCCGACTGCGACGACCACCAAAGCAGCGCCGGCGAAAACTACACATCATAAAAAACAGCATAAAGCAGCACCTGccc                                             <  1:55654/149‑1 (MQ=255)                                                                                        gCTCTGGTTGTTGCCGCTGCTATGGGAGTGTCTT‑CTTCCGCCTTTGCTGCAGAGACTACGACCACACCTGCTCCGACTGCGACGACCACCAAAGCAGCGCCGGCGAAAACTACACATCATAAAAACCAGCATAAAGCAGCCCCTGCCCa                                            >  2:232667/1‑149 (MQ=255)                                                                                                           ctATGGGTCTGTCTT‑CTGCCGCCTTTGCTGCAGAGACTACGACCACACCTGCTCCGACTGCGACGACCACCAAAGCAGCGCCGGCGAAAACTACACATCATAAAAAACAGCATAAAGCAGCACCTGCCCAGAAAGCGCAGGCGGCTaaa                         >  1:83087/1‑149 (MQ=255)                                                                                                             aTGGGTCTGTCTT‑CTGCCGCCTTTGCTGCAGAGACTACGACCACACCTGCTCCGACTGCGACGACCACCAAAGCAGCGCCGGCGAAAACTACACATCATAAAAAACAGCATAAAGCAGCACCTGCCCAGAAAGCGCAGGCGGCTaaaaa                       <  2:83087/149‑1 (MQ=255)                                                                                                                 tcgtagtctctgcagcaaaggcggcagaaGACTACGACCACACCTGCTCCGACTGCGACGGCCACCAAAGCAGCGCCGGCGAAAACAACACATCATAAAAAACAGCATAAAGCAGCACCTGCCCAGAAAGCGCAGAGGGCAAAAAAGca                    >  1:230203‑M2/30‑149 (MQ=255)                                                                                                                 gtctgtctT‑CTGCCGCCTTTGCTGCAGAGACTACGACCACACCTGCTCCGACTGCGACGACCACCAAAGCAGCGCCGGCGAAAACTACACATCATAAAAAACAGCATAAAGCAGCACCTGCCCAGAAAGCGCAGGCGGCTAAAAAGcat                   >  1:183991/1‑149 (MQ=255)                                                                                                                        tctctgcagcaaaggcggcagaGACTACGACCACACCTGCTCCGACTGCGACGacca                                                                                                         >  1:197106‑M2/23‑57 (MQ=255)                                                                                                                        tctctgcagcaaaggcggcagaGACTACGACCACACCTGCTCCGACTGCGACGacca                                                                                                         <  2:197106‑M2/35‑1 (MQ=255)                                                                                                                                 ccTTTGCTGCAGAGACTACGACCACACCTGCTCCGACTGCGACGACCACCAAAGCAGCGCCGGCGAAAACTACACATCATAAAAAACAGCATAAAGCAGCACCTGCCCAGAAAGCGCAGGCGGCTAAAAAGCATCATAAAAATACGaaa    <  2:273427/149‑1 (MQ=255)                                                                                                                                   tttGCTGCAGAGACTACGACCACACCTGCTCCGACTGCGACGACCACCAAAGCAGCGCCGGCGAAAACTACACATCATAAAAAACAGCATAAAGCAGCACCTGCCCAGAAAGCGCAGGCGGCTAAAAAGCATCATAAAAATACGAAAGc  >  1:291295/1‑149 (MQ=255)                                                                                                                                              |                                                                                                                                          ATTCCCAGGGATATAGTTATTTCAACGGCCCCGCAGTGGGGTTAAATGAAAAAACAAATTGAGGGTATGACAATGAAAAAAGTATTAGCTCTGGTTGTTGCCGCTGCTATGGGTCTGTCTT‑CTGCCGCCTTTGCTGCAGAGACTACGACCACACCTGCTCCGACTGCGACGACCACCAAAGCAGCGCCGGCGAAAACTACACATCATAAAAAACAGCATAAAGCAGCACCTGCCCAGAAAGCGCAGGCGGCTAAAAAGCATCATAAAAATACGAAAGC  >  NC_000913_3_vch_pgi/1671304‑1671581

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.