| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | = 3944978 | NA (NA) | 8 (0.200) | 6/274 | 4.8 | 18.8% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_hsa_tpiA | = 4038811 | 36 (0.850) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGT‑TCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGA > NC_000913_3_hsa_tpiA/4038664‑4038876 | aaTGCGCCGAATCTGCGGCAGCGACACGATGGGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTc < 2:188191/148‑1 (MQ=255) aTGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGGGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGGATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCGGCTCg > 1:299679/1‑149 (MQ=255) aTGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTGATCTTGTGATGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCTGCtgg > 1:404078/1‑147 (MQ=14) aTGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCg > 2:562629/1‑149 (MQ=255) gCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGAATTAGGGAACGATAAAGCGGGTGAAAAGCCCGCTCGcc < 1:562629/149‑1 (MQ=255) ccGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGa > 1:678811/1‑149 (MQ=40) cGAAGCTGCGGCAGCGCCACTATGTGTTTGTGGGTAGTGGAGCGTTCTGCAAGCCTGTCAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGaa < 2:190963/149‑1 (MQ=14) cGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGGGACGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAGCGAAAAAGCGGGTGAAAAGCCCGCTCGCCgaga > 2:329355/1‑146 (MQ=14) gCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGAcc > 1:111765/1‑149 (MQ=255) cGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAGGACCAAgg > 2:409922/1‑149 (MQ=255) aGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGT‑Tc < 1:457689/149‑1 (MQ=255) aGCGACACTATGGGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGT‑Tc < 2:263548/149‑1 (MQ=38) cGACTCTATGTGTTGTTGGGTAGCGGAGCGTTCTGTAAGCCTGTGCAGGTGTGCTGTGAGGCGTGCTGGAGGTATCAGGAGTGCGAATGCTCACTTAACTAACGCTAAAGCGGGTGAAACGCCCGCTCGCCGGAAGACCAAGGGT‑TCCt < 1:639965/149‑1 (MQ=11) gACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGATGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGT‑TCCTg > 1:698188/1‑149 (MQ=255) gACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGT‑TCCTg > 1:706546/1‑149 (MQ=38) cacCATGGGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGT‑TCCTGTc < 1:268772/149‑1 (MQ=17) tATGTGTTGGTGTGTGGAGCAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGT‑TCCTGTCCaa > 2:546062/1‑149 (MQ=11) aTGTGTTGGTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGATGACATAACTAACGACAAAGCGGGTGGAAAGCCCGCTCGCCGGAAGACCCAGGGT‑TCCTGTCCAAc < 2:160228/149‑1 (MQ=11) gtgtTGTTGGGTAGGGGAGCGTTCTGTAAGCCGGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGT‑TCCTGTCCAACgg > 2:442021/1‑148 (MQ=18) gttgttGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGT‑TCCTGTCCAACGTTa > 2:293973/1‑149 (MQ=32) ttgttgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGT‑TCCTGTCCAACGTTaa > 1:62400/1‑149 (MQ=32) ggTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAATGGT‑TCCTGTCCAACGTTAATCgcgg > 2:395939/1‑149 (MQ=17) ggTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGT‑TCCTGTCCAAAGTTAATCgggg > 2:535700/1‑149 (MQ=17) ggggAGCGGTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAGAGCCCGCTCGCCGGAAGACCAAGGGT‑TCCTGTCCAACGTTAATCGGGGCAgg < 2:710695/149‑1 (MQ=17) aGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGT‑TCCTGTCCAACGTTAATCGGGGCAGGGTGa < 1:503599/149‑1 (MQ=32) gCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGT‑TCCTGTCCAACGTTAATCGGGGCAGGGTGAg < 2:62400/149‑1 (MQ=32) gTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGT‑TCCTGTCCAACGTTAATCGGGGCAGGGTGAGTc > 1:564808/1‑149 (MQ=32) gTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGT‑TCCTGTCCAACGTTAATCGGGGCAGGGTGAGTc < 2:678811/149‑1 (MQ=32) cTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGT‑TCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAc < 1:212976/149‑1 (MQ=32) tGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGATGGAGTGATCAGAAGTGCGAATGCTGACATAAGTCAAGTTAAAGCGGGTGAAAAGAGCGCTCGCCGGAAGA‑GAAGGGTGTCCTGTCCAACGTTAATCGGGGCAGGGTGCGTGGAcc > 2:189780/1‑149 (MQ=11) tGTAAGCCTGTGAAGGTGTGCTGTGAGGCATCCTGGAGGTATCAGAAGTGCGGATGCTGACATAAGTAACTATAAAGCAGGAGAAAACACAGCTCACCGCCAGAGCACGGGA‑TCCTATCCAGCATTAATCGGGACTGGGTGaagcggcc > 2:609290/1‑142 (MQ=2) gTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGT‑TCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAccc > 1:602116/1‑149 (MQ=32) gCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGT‑TCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTaa > 2:469378/1‑149 (MQ=32) cTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGCT‑TCCTGTCCAACGTTAAAAGGGGCAGGGTGAGTCGACCCATAggg > 2:155197/1‑149 (MQ=11) tgtgAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGAGCGAGGGG‑TCCTGTCCACCGTTAATCGGGGCAGGGTGAGGCGGCCCGTAAGGc > 1:101355/1‑149 (MQ=11) tgtgAAGGTGGGCTGGGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGT‑TCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGc < 1:154226/149‑1 (MQ=17) tgAAGGGGTGCTGTTAGGCATGCGGGAGGTATCAGAAGTGCGAATGCTGACATAAGTACCGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGT‑TCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGa < 2:343161/149‑1 (MQ=2) | CATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGT‑TCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGA > NC_000913_3_hsa_tpiA/4038664‑4038876 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |