New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	1207790 =	46 (1.080)	6 (0.160)	6/254	4.5	13.5%	coding (290/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913_3_hsa_tpiA	1209619 =	36 (0.950)					pseudogene (1/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCA‑TTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCA‑GAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGA  >  NC_000913_3_hsa_tpiA/1209476‑1209767                                                                                                                                                |                                                                                                                                                       agTCAGAGAAGCCTGTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATCTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTa                                                                                                                                                   <  2:722069/148‑1 (MQ=255)  ggtggATAAGCGTTGGCCAGTTCCGGGTATTCTGCAGCAGAAAAAGCGGCACGATTGCATTGCAGCCAGCGTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGTTAATGCAGAGCCTTCTCCCAAACCAACGTTTAt                                                                                                                                                  <  2:196432/146‑1 (MQ=255)  gTCGGGTAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTAt                                                                                                                                                  <  1:723438/149‑1 (MQ=255)       aTAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaaaa                                                                                                                                             <  1:117340/149‑1 (MQ=255)       aTAAGCCTTCGCCAGTGCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAGCCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAAGGttttcgagag                                                                                                                                             <  2:754188/149‑8 (MQ=255)           gCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAACCCAACGTTTATGAAAATgaa                                                                                                                                         >  2:308934/1‑149 (MQ=255)           gCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaa                                                                                                                                         >  1:741292/1‑149 (MQ=255)            ccTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaag                                                                                                                                        <  1:380311/149‑1 (MQ=255)                tGCCAGTTCCGGGCACTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAACGCCACTGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAAt                                                                                                                                    <  1:105045/149‑1 (MQ=255)                  ccAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATaa                                                                                                                                  <  2:449166/149‑1 (MQ=255)                     gTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACaa                                                                                                                               <  2:87680/149‑1 (MQ=255)                      ttCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACATTTATGAAAATGAAGAAATAACaac                                                                                                                              >  2:671251/1‑148 (MQ=255)                         cGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCaa                                                                                                                           >  1:326600/1‑149 (MQ=255)                          gggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCaaa                                                                                                                          >  1:374578/1‑149 (MQ=255)                            gTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATg                                                                                                                        >  1:544503/1‑149 (MQ=255)                              aTTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGc                                                                                                                      <  2:614283/149‑1 (MQ=255)                                     agcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATa                                                                                                                                   >  2:757373/1‑129 (MQ=255)                                     agcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATa                                                                                                                                   <  1:757373/129‑1 (MQ=255)                                                        ttGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCA‑TTCCTGCTTTTACCAGGGGGAt                                                                                           <  2:326600/149‑1 (MQ=255)                                                        ttGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCAACA‑TTCCTACTATTACCAGGGGGag                                                                                           >  1:394025/1‑148 (MQ=255)                                                             tttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCA‑TTCCTGCTTTTACCAGGGGGATTTAAc                                                                                      >  1:25249/1‑149 (MQ=255)                                                              ttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCA‑TTCCTGCTTTTACCAGGGGGATTTAACa                                                                                     <  1:699837/149‑1 (MQ=255)                                                                 agccagcgTGTGGGCGGAGTGGCTGAAGGCAACGGAACCGGGGCACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCA‑TTCCTGCTTTTACCAGGGGGATTTAACATGc                                                                                  <  2:246245/149‑1 (MQ=255)                                                                       ccTGTTGGCGGGGTGGCTGAAGGCCACGGAACCGGAACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCA‑TTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTg                                                                            <  2:457622/149‑1 (MQ=255)                                                                       ccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCA‑TTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTg                                                                            <  2:544503/149‑1 (MQ=255)                                                                                ggAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGACGACTACACGTTCAAAT‑GAATCAGCACCTGGTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAc                                                                   <  1:558961/149‑1 (MQ=255)                                                                                    tGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCA‑TTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGt                                                               <  1:507824/149‑1 (MQ=255)                                                                                      gCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGACATCA‑TTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTAt                                                             >  1:267374/1‑149 (MQ=255)                                                                                       cTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCA‑TTCCTGc                                                                                                          <  1:265191/103‑1 (MQ=255)                                                                                       cTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCA‑TTCCTGc                                                                                                          >  2:265191/1‑103 (MQ=255)                                                                                             gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCA‑TTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACaaa                                                      <  2:239299/149‑1 (MQ=255)                                                                                                 cGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCA‑TTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc                                                  <  1:45767/149‑1 (MQ=255)                                                                                                    aaCCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCA‑TTCCTGCTTTTACCAGGAGGCTTCGACGGGCTGATGGGCGATTTAGTCTTATCAACAAATGCCCat                                               >  1:157116/1‑148 (MQ=255)                                                                                                             acCAACAGGTAATGCAGAGCCTTCTCCCAAACCATCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCA‑TTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCA‑GAACACAGAt                                     <  2:213209/149‑1 (MQ=255)                                                                                                                aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCA‑TTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAGATAACCAGGAACA‑AGATCTa                                  >  1:436511/1‑149 (MQ=255)                                                                                                                             gagCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCA‑TTCATGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATAAACACATGACCA‑GAACACAGATCTACAACGTAATacgc                     >  2:564224/1‑149 (MQ=255)                                                                                                                                 cTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCA‑TTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCA‑GAACACAGATCTACAACGTAATGCGCTGaa                 >  2:705768/1‑149 (MQ=255)                                                                                                                                  ttCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCA‑TTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCA‑GAACACAGATCTACAACGTAATGCGCTGAAc                >  1:481830/1‑149 (MQ=255)                                                                                                                                     tcCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCA‑TTCCTGCTTTTACCAgg                                                                                                <  2:252197/67‑1 (MQ=255)                                                                                                                                     tcCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCA‑TTCCTGCTTTTACCAgg                                                                                                >  1:252197/1‑67 (MQ=255)                                                                                                                                     tcCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCA‑TTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCA‑GAACACAGATCTACAACGTAATGCGCTGAACtgt             >  1:258204/1‑149 (MQ=255)                                                                                                                                      cccAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCA‑TTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGACCCCCTTTGAACAAATGACCA‑AAACACAGATCTACAACGTAATGCGCTgtgatcgg            >  1:592148/1‑142 (MQ=255)                                                                                                                                       ccAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCA‑TTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCA‑GAACACAGATCTACAACGTAATGCGCTGAACTGTGc           >  1:509779/1‑149 (MQ=255)                                                                                                                                        cAAACCAACTTTTATGAAAATGACGAAATAACAAGCAAATGGCATCA‑TGCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCA‑GAACACAGTTCTACAACGTAATGCGCTGAACTGTGCa          <  2:296764/149‑1 (MQ=255)                                                                                                                                         aaaCCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCA‑TTCCTGCTTTTACCAGAGGGATTTAACATGCTTATTGGCTATGTACGCCTATCAACAAATGACCA‑GAACACAGATCTACAACGTAAAGCCCTGAAccgatcag         >  2:15412/1‑142 (MQ=255)                                                                                                                                             cAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCA‑TTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTAGCTATGTACGCGTATCAACAAATGACCA‑GAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATg     >  2:302234/1‑149 (MQ=255)                                                                                                                                              aaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCA‑TTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCA‑GAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGc    <  1:59982/149‑1 (MQ=255)                                                                                                                                                cGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCA‑TTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCA‑GAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGa  <  1:595093/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                       TGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCA‑TTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCA‑GAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGA  >  NC_000913_3_hsa_tpiA/1209476‑1209767

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.