New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	349605 =	NA (NA)	5 (0.090)	5/268	7.9	NA	noncoding (1/365 nt)	REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences	REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences
	?	NC_000913_3_hsa_tpiA	349637 =	NA (NA)					noncoding (33/365 nt)	REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences	REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences
Rejected: Coverage evenness skew score above cutoff.

GCAACGAGCTGTACGAAAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAA  >  NC_000913_3_hsa_tpiA/349490‑349785                                                                                                                                                    |                                                                                                                                                      gCAACGAGCTGTACGAAAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCt                                                                                                                                                      <  1:475754/149‑1 (MQ=255)   aaCGAGCTGTACGAAAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGCAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTAc                                                                                                                                                    >  2:387735/1‑149 (MQ=255)      gAGCTGTACGAAAGCACCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑Ag                                                                                                                                                <  1:680069/149‑1 (MQ=255)        gCTGTACGAAAGCAACAACTACCACCAGTACGAAGATAATCTCTACATCCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGt                                                                                                                                              <  1:363778/149‑1 (MQ=38)           gTACGAAAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCa                                                                                                                                           <  2:266798/149‑1 (MQ=255)            tACGAAAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCAc                                                                                                                                          >  1:155016/1‑149 (MQ=255)               gAAAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGa                                                                                                                                       >  2:118376/1‑149 (MQ=255)               gAAAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGa                                                                                                                                       >  2:736522/1‑149 (MQ=255)                ggaggagcAACCACGACTAGTAAGAAGAGAAGCGATACAACCTGTTGGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGTTTTTATTCGACAGCCGATGCCTGATGTGTCGCTGACGCGACTTATCAGTCCTACG‑AGGTGCACTGaa                                                                                                                                      <  2:377385/142‑1 (MQ=255)                aaaGCATCAACTAGTACCAGTACGAAGATAAGCTCGACAATCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGaa                                                                                                                                      <  2:207640/149‑1 (MQ=255)                aaaGAATCAACCACTAGCAGCACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGaa                                                                                                                                      <  2:641713/149‑1 (MQ=255)                  aGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACt                                                                                                                                    <  1:736522/149‑1 (MQ=255)                   tcagcAACTACAACCAATACGAAGAGAAGCACGACAACCTGTTTGCCCGTAGCCAGTTGAAATAATAAACGCCCGTTGATTGTATTCGACAGCCGGTGCCTGATGCGTCGCTGACGCGACCTATCAGGCCTACG‑AGGTGCACTGAACTg                                                                                                                                   <  2:644135/145‑1 (MQ=255)                        aaCTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGGGCCCTGAACGTTAGGt                                                                                                                              >  2:401949/1‑149 (MQ=255)                          ctactaCCAGTACGAAGAGAAGCTCGACACCCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCg                                                                                                                            <  1:111445/149‑1 (MQ=255)                                 cAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGa                                                                                                                     >  1:140753/1‑149 (MQ=255)                                   gTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCACGTTGGTTGGATTCGACAGCAGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGAACTGAACTGTAGGTCGGATAAGACg                                                                                                                   >  1:1043912/1‑149 (MQ=25)                                      cGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGAGTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGAt                                                                                                                <  1:934488/149‑1 (MQ=255)                                        aaGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATgg                                                                                                              >  2:638450/1‑149 (MQ=255)                                         agagAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGaa                                                                                                                                      <  1:434909/124‑1 (MQ=255)                                         agagAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGaa                                                                                                                                      >  2:434909/1‑124 (MQ=255)                                             aaGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATg                                                                                                               >  2:790122/1‑143 (MQ=255)                                             aaGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATg                                                                                                               <  1:790122/143‑1 (MQ=255)                                               gcgcGACAACCTGTTTGCCCGTAGCCAGGTGAGATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTCCGTAGTTGTA‑TAATCAGTAGGTCGGATAAGACGGATGGCGTCGCa                                                                                                       >  2:223478/4‑149 (MQ=25)                                                 tCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGCATGGCGTCGCATc                                                                                                     >  2:157498/1‑149 (MQ=255)                                                    aCAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGGGCACTGAACTGTAGGTCGGATAAGACGGATGGGGTGGCATCCGa                                                                                                  >  1:436955/1‑149 (MQ=255)                                                    aCAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGCCCTCCG‑AGGCGCCCTGCACCGTCGGCCGGATAAGACGGATGGCGTCGCATCCGa                                                                                                  >  1:938500/1‑149 (MQ=255)                                                     cAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGAATGGCGTCGCATCCGAc                                                                                                 >  2:241781/1‑149 (MQ=255)                                                       aCCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACaa                                                                                               <  1:521420/149‑1 (MQ=255)                                                       aCCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACaa                                                                                               <  2:614595/149‑1 (MQ=255)                                                                 ccGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTGCG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACTGATGCCTg                                                                                     >  1:942282/1‑149 (MQ=255)                                                                 ccGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATaa                                                                                                                       >  2:798741/1‑115 (MQ=255)                                                                 ccGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATaa                                                                                                                       <  1:798741/115‑1 (MQ=255)                                                                  cGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGa                                                                                    <  1:924046/149‑1 (MQ=255)                                                                   gTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGAt                                                                                   >  1:900297/1‑149 (MQ=255)                                                                       ccAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATgcgc                                                                               <  2:900297/149‑1 (MQ=255)                                                                       ccAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATgcgc                                                                               >  1:53434/1‑149 (MQ=255)                                                                           gTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGc                                                                                        <  1:431074/136‑1 (MQ=255)                                                                           gTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGc                                                                                        >  2:431074/1‑136 (MQ=255)                                                                            tGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGGCGGATGGCGTTCCATCCGACAACCGATGCCTGATGCGGCGCTg                                                                          >  2:423363/1‑149 (MQ=255)                                                                             gAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGa                                                                         >  2:1008241/1‑149 (MQ=255)                                                                             gAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGa                                                                         <  1:421255/149‑1 (MQ=255)                                                                                aTAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGAt                                                                                                                         >  1:330723/1‑98 (MQ=255)                                                                                aTAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGAt                                                                                                                         <  2:330723/98‑1 (MQ=255)                                                                                 tAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGATGACTCGACTTTTCGGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTg                                                                     >  2:971083/1‑149 (MQ=255)                                                                                  aaacaaCGACCGTTGATTGTCGTCGATAGCCGATGCCTGAGCCGTCGCGCACGCGACTTATCAGGCCTACG‑AGGCGCACTGAACTGTAGGTCGGATACGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGa                                                                    <  2:23060/149‑1 (MQ=17)                                                                                  aaaaaaCGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATc                                                                                                     >  2:675499/1‑116 (MQ=255)                                                                                  aaaaaaCGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATc                                                                                                     <  1:675499/116‑1 (MQ=255)                                                                                           ccGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAgg                                                           >  1:1004392/1‑149 (MQ=255)                                                                                            cGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACgc                                                                      >  1:274142/1‑136 (MQ=255)                                                                                            cGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACgc                                                                      <  2:274142/137‑2 (MQ=255)                                                                                                   tGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAg                                                            >  1:394114/1‑140 (MQ=255)                                                                                                   tGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAg                                                            <  2:394114/140‑1 (MQ=255)                                                                                                   tGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACggg                                                   <  1:118376/149‑1 (MQ=255)                                                                                                    gTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACgggg                                                  <  1:387735/149‑1 (MQ=255)                                                                                                     tATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGt                                                 >  1:428574/1‑149 (MQ=255)                                                                                                      aTTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTAc                                                                                                                                                    <  1:591810/50‑1 (MQ=255)                                                                                                      aTTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTAc                                                                                                                                                    >  2:591810/1‑50 (MQ=255)                                                                                                       ttCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑GGGTGCAATGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAAGCCTACGGGGTGc                                               >  2:710353/1‑149 (MQ=255)                                                                                                       ttCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGAAGCGCCGCTGACGTGGCTTATCAGGCCTACGGGGtcg                                               >  2:305332/1‑147 (MQ=255)                                                                                                       ttCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACAGATTCCTGATGCGCCGCTGTCATGACTACTCAGGCCACCGGGGTga                                               >  1:445673/1‑148 (MQ=17)                                                                                                                   tGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAg                                   <  1:67523/149‑1 (MQ=255)                                                                                                                      cTGGTGCGGCGCTGACGCGACTTCTCGGGTCTACG‑AGGGGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTTGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTc                                <  2:929507/149‑1 (MQ=14)                                                                                                                       tGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAg                                                                                                                      >  1:51040/1‑62 (MQ=255)                                                                                                                       tGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAg                                                                                                                      <  2:51040/62‑1 (MQ=255)                                                                                                                       tGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGAc                                                                                                                    >  2:951199/1‑64 (MQ=255)                                                                                                                       tGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGAc                                                                                                                    <  1:951199/64‑1 (MQ=255)                                                                                                                       tGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGAAGTGACTTATCAGGCCTACGGGGTGCACTGAACCGTAGGGCg                               >  1:133609/1‑149 (MQ=255)                                                                                                                       tGATGCGTAGCTGACGCGACTTATCAGGCCTACG‑CGGTGCACTGAACCGTAGGTCGGATAAGATGGATGGCGTCTCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCg                               <  1:942618/149‑1 (MQ=14)                                                                                                                         aTGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGa                             <  1:231271/149‑1 (MQ=255)                                                                                                                             gTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTCGGTCGGATAAg                         >  2:30240/1‑149 (MQ=255)                                                                                                                             gTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGGGCCCCGAACTGTAGGTCGGATAAg                         >  2:389138/1‑149 (MQ=255)                                                                                                                              tCGCTGGCGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGCCGCATGGCGTCGCATCCGACACCCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGGGCCCTGAACGGTCGGTCGGATAAgc                        >  2:816221/1‑148 (MQ=11)                                                                                                                                  tgaagggACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTAGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCa                    <  2:344361/143‑1 (MQ=255)                                                                                                                                  ggACGCGACTTATCGGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGTACTGAACTGTAGGTCGGATAAGACGCa                    <  2:1043912/148‑1 (MQ=255)                                                                                                                                   gACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCAt                   <  1:873412/149‑1 (MQ=255)                                                                                                                                    aCGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATa                  <  1:305332/149‑1 (MQ=255)                                                                                                                                     cgcgACTTATCAGTCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAg                 <  2:570518/149‑1 (MQ=255)                                                                                                                                      gcgACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGc                >  2:234977/1‑149 (MQ=17)                                                                                                                                           ttATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGc                                               <  1:574529/113‑1 (MQ=255)                                                                                                                                           ttATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGc                                               >  2:574529/1‑113 (MQ=255)                                                                                                                                             aTCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATc                                                                                                     <  1:563808/57‑1 (MQ=255)                                                                                                                                             aTCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATc                                                                                                     >  2:563808/1‑57 (MQ=255)                                                                                                                                              tCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTAACGTGACTTATCAGGCCTACGGGGGGAGCTGAACTGTAGGTCGGGTAAGACGCATAGCGTCGCATc        >  2:116994/1‑149 (MQ=11)                                                                                                                                               cAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCAGCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATcc       <  1:401949/149‑1 (MQ=255)                                                                                                                                                 ggCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACggg                                                   <  1:830124/103‑1 (MQ=255)                                                                                                                                                 ggCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACggg                                                   >  2:830124/1‑103 (MQ=255)                                                                                                                                                  gCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGAc    >  1:476852/1‑149 (MQ=40)                                                                                                                                                    cTACG‑GGGTGCACTGAACTGTAGGTCGGATAAGACGGAGGGCGTCGGATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACaa  <  2:428574/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      GCAACGAGCTGTACGAAAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAA  >  NC_000913_3_hsa_tpiA/349490‑349785

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.