New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 4612310	43 (0.870)	4 (0.090)	4/260	6.6	9.1%	intergenic (+39/‑83)	ytjA/yjjU	uncharacterized protein/putative patatin‑like family phospholipase
	?	NC_000913_3_hsa_tpiA	= 4612313	40 (0.880)					intergenic (+42/‑80)	ytjA/yjjU	uncharacterized protein/putative patatin‑like family phospholipase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTGGTCTGGCCGGTACCGCTGCAGGCGCAGCTAAAATTGTCTTTGTCGTCGGGATTATTCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGC‑GGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTGGGGCAGCGAATACCTGTAACGCTTGGTAATATTGCGCCGTTGTCGCTAAGGCCGTTCCAGCCTGGA  >  NC_000913_3_hsa_tpiA/4612171‑4612461                                                                                                                                               |                                                                                                                                                      gtggtCTGGCCGGTACCGCTGCAGGCGCAGCTAAAATTGTCTTTGTCGTCGGGATTATTCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGCAAATTTTATCCAAAGCCGGTCCACC‑GGACTg                                                                                                                                                >  2:346498/1‑149 (MQ=255) gtggtCTGGCCGGTACCGCTGCAGGCGCAGCTAAAATTGTCTTTGTCGTCGGGATTATTCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGC‑GGACTg                                                                                                                                                <  1:530760/149‑1 (MQ=255)   ggtCTGGCCGGTACCGCTGCAGGCGCAGCTAAAATTGTCTTTGTCGTCGGGATTATTCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGC‑GGACTGGc                                                                                                                                              <  1:437854/149‑1 (MQ=255)             gtacgcgtGCAGGCGCAGCGAAAATTGTGTTTGTCGTCGGGATAATTCTGTCCCTGGTTAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGC‑GGACTGGCTTTTGCGGtt                                                                                                                                    <  2:382518/142‑1 (MQ=255)               aCCGCTGCAGGCGCAGCTAAAATTGTCTTTGTCGTCGGGATTATTCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGC‑GGACTGGCTTTTGCGGtttt                                                                                                                                  >  2:564244/1‑149 (MQ=255)                ccGGTGCAGTCGCAGCTAAAACTGTCGTTGTCGTCGGGATTATTCTGGTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGC‑GGACTGGCTTTTGCGGTTTTa                                                                                                                                 <  2:742416/149‑1 (MQ=255)                  gCTGCAGGCGCAGCTAAAATTGTCTTTGTCGTCGGTATTATTCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGC‑GGACTGGCTTTTGCGGTTTTAGc                                                                                                                               <  1:739750/149‑1 (MQ=255)                     gCAGGCGCAGCTAAAATTGTCTTTGTCGTCGGGATTATTCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGC‑GGACTGGCTTTTGCGGTTTTAGCGaa                                                                                                                            <  2:677544/149‑1 (MQ=255)                              gCTAAAATTGTCTTTGTCGTCGGGATTATTCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGC‑GGACTGGCTTTTGCGGTTTTAGCGAATAATAAAtt                                                                                                                   <  1:325184/149‑1 (MQ=255)                               cTAAAATTGTCTTTGTCGTCGGGATTATTCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGC‑GGACTGGCTTTTGCGGtt                                                                                                                                    >  2:161539/1‑131 (MQ=255)                               cTAAAATTGTCTTTGTCGTCGGGATTATTCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGC‑GGACTGGCTTTTGCGGtt                                                                                                                                    <  1:161539/131‑1 (MQ=255)                                   aaTTGTCTTTGTCGTCGGGATTATTCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGC‑GGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGtt                                                                                                              >  2:113529/1‑149 (MQ=255)                                                  cgGGATTATTCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGC‑GGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCttt                                                                                               <  2:503100/149‑1 (MQ=255)                                                       ttactCTGTTCCTGGTCAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGC‑GGACTCGCTTTTGTGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCccaa                                                                                          <  2:293157/149‑1 (MQ=255)                                                        tattCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGC‑GGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCacaac                                                                                         <  2:659510/149‑1 (MQ=255)                                                             tgagtcTGGTGAGTTTGTTCATGGGCCGAAAACTACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGC‑GGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTGCACAACaaaaa                                                                                    <  1:408904/144‑1 (MQ=255)                                                             tGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGC‑GGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACaaaaa                                                                                    >  1:72549/1‑149 (MQ=255)                                                               ttCCTGGGTAGTGTAGTCAGGTGCCGAAAGCGACCCTAGATGTCAGACCATTAAGAAAATTTTATCCAGAGCCAGCCCAGC‑GGACTGGCTTTTGCGGTTTTAGCGAATCATATATTGCGTTACTTTGTCATTCTTTCACAACAAAAACa                                                                                  <  2:60484/149‑1 (MQ=255)                                                                    ggTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGC‑GGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAg                                                                             <  1:113529/149‑1 (MQ=255)                                                                    ggTGAGTTTGGTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGC‑GCACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAg                                                                             <  1:404528/149‑1 (MQ=255)                                                                             gTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAAATTTATGCAAAGCAAATCCAGC‑GGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTg                                                                    >  1:124815/1‑149 (MQ=255)                                                                              ttCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGC‑GGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGATgg                                                                   >  2:81615/1‑149 (MQ=255)                                                                                  tGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGC‑GGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTACGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTGGGGCa                                                               >  1:850831/1‑149 (MQ=255)                                                                                       cGAAAACGCCCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGC‑GGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTGGGGCAGCGaa                                                          <  1:182666/149‑1 (MQ=255)                                                                                                   tAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGC‑GGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTGGGGCAGCGAATACCTGTAACGc                                              >  1:422537/1‑149 (MQ=255)                                                                                                           aGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGC‑GGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTGGGGCAGCGAATACCTGTAACGCTTGGTAat                                      >  2:717166/1‑149 (MQ=255)                                                                                                               cATTAAGAAAATTTTATCCAAAGCCAGTCCAGC‑GGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTGGGGCAGCGAATACCTGTAAAGCTTGGTAATATTg                                  >  2:207094/1‑149 (MQ=255)                                                                                                                      aaaaTTTGATCCAAAGCCAGTCCAGC‑GGACTGGCTTATGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTGGGGCAGCGAATACCTGTAACGCTTGGTAATATTGCGCCGtt                           <  2:258536/149‑1 (MQ=255)                                                                                                                        aaTTTTATCCAAAGCCAGTCCAGC‑GGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGa                                                                               <  2:380619/95‑1 (MQ=255)                                                                                                                        aaTTTTATCCAAAGCCAGTCCAGC‑GGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGa                                                                               >  1:380619/1‑95 (MQ=255)                                                                                                                                 cAAAGCCAGTCCAGC‑GGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCCTTCTTTCCCAACAACCTCAGGGAGGCAGAGTTGGGGCAGCGAATACCTGTAACGCTTGGTAATATTGCGCCGTTGTCGCCAAGGc                >  2:531894/1‑149 (MQ=255)                                                                                                                                 cAAAGCCAGTCCAGC‑GGACTGGCTTTTGCAACTCAAGCGTATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTGGGGCAGCGAATACCTGTAACGCTTGGTAATATTGCGCCGTTGTCGCTAAGGc                >  1:429112/1‑149 (MQ=255)                                                                                                                                  aaaGCCAGTCCAGC‑GGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCAGAACAAAAAAAGGAAGGCAGAGGTGGGGAAGCGAATACCTGTAACGCCTGGGAATATTTGGCAGTTATAGCTaatgac               >  2:332151/1‑145 (MQ=255)                                                                                                                                  aaaGCCAGTCCAGC‑GGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTg                                                                    >  1:233065/1‑96 (MQ=255)                                                                                                                                  aaaGCCAGTCCAGC‑GGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTg                                                                    <  2:233065/96‑1 (MQ=255)                                                                                                                                  aaaGCCAGTCCAGC‑GGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTGGGGCAGCGAATACCTGTAACGCTTGGTAATATTGCGCCGTTGTCGCTAAGGcc               >  1:702836/1‑149 (MQ=255)                                                                                                                                    aGCCAGTCCGCT‑GGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTGGGGCAGCGAATACCTGTAACGCTGGGTAATATTTCGCCGTTGTCGCTAAGGCCGt             >  2:441053/1‑149 (MQ=255)                                                                                                                                    aGCCAGTCC‑GCTGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCAGTCTTTCACAACAAAAACAGGAAGGCAGTGGTGGGGAAGCGAATACCTGTAACGCTTGGTAATATTGCGCCGTTGTCGCTAAGGCCGt             >  2:441060/1‑149 (MQ=255)                                                                                                                                      ccAGTCCAGC‑GGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGaa                                                                              <  1:756209/82‑1 (MQ=255)                                                                                                                                      ccAGTCCAGC‑GGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGaa                                                                              >  2:756209/1‑82 (MQ=255)                                                                                                                                         gTCCAGC‑GGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTGGGGCAGCGAATACCTGTAACGCTTGGTAATATTGCGCCGTTGTCGCTAAGGCCGTTCCAg        <  2:702836/149‑1 (MQ=255)                                                                                                                                            cAGC‑GGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTGGGGCAGCGAATACCTGTAACGCTTGGTAATATTGCGCCGTTGTCGCTAAGGCCGTTCCAGCCt     <  1:482168/149‑1 (MQ=255)                                                                                                                                               c‑GGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTGGGGCAGCGAATACCTGTAACGCTTGGTAATATTGCGCCGTTGTCGCTAAGGCCGTTCCAGCCTGGa  <  2:124815/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                      GTGGTCTGGCCGGTACCGCTGCAGGCGCAGCTAAAATTGTCTTTGTCGTCGGGATTATTCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGC‑GGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTGGGGCAGCGAATACCTGTAACGCTTGGTAATATTGCGCCGTTGTCGCTAAGGCCGTTCCAGCCTGGA  >  NC_000913_3_hsa_tpiA/4612171‑4612461

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.