New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 4542672	45 (0.930)	6 (0.130)	6/264	5.4	14.1%	intergenic (+57/‑425)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
	?	NC_000913_3_hsa_tpiA	= 4542968	31 (0.680)					intergenic (+353/‑129)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGC‑CAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTG  >  NC_000913_3_hsa_tpiA/4542824‑4543114                                                                                                                                                  |                                                                                                                                                   gtgGCTCGACGCATCCTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATGAATCTCGAC‑TCTGGCGCGTAATAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGc                                                                                                                                                <  1:416373/149‑1 (MQ=255)    gCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGC‑CAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGcccc                                                                                                                                             >  1:611941/1‑149 (MQ=255)         aCGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGC‑CAACAAATAAACTGAAAAAGTTTGTCCGCGATGATTTCCTCTATGAGTCAAAATGGCCCCAAATg                                                                                                                                        >  1:786150/1‑149 (MQ=255)          cGCATCTTCCTCATTCTTCGCTCCAAAACCCACCCAGTCGAAGAGGAACATCTATAAATAAAGATAACAATAGAATATTAAGC‑CAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGt                                                                                                                                       <  1:789359/149‑1 (MQ=255)           gCATCTTCCTCATTCTACTCTCCAAAAACCGCCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGC‑CAACAAATACACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAATTGtc                                                                                                                                      <  1:561028/149‑2 (MQ=255)                    tccttcttcTCTCCAAAAACCACCCCAGGCAATATAAACACCTATAACTAAAGATAACAATAGAATATTAAGC‑CAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCACAATGGCCCCAAATGTTTCATCtttt                                                                                                                             <  1:360882/146‑1 (MQ=255)                      aTTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGC‑CAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTgg                                                                                                                           <  2:62764/149‑1 (MQ=255)                      aTTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGC‑CAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAAGGTTTCATCTTGTgg                                                                                                                           <  2:611941/149‑1 (MQ=255)                       ttcttcTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGC‑CAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTggg                                                                                                                          <  2:798878/149‑1 (MQ=255)                          ttctCTCCAAAAACCACCTCATGCACTATAAACATCTATAAATAAAGATAACAATCCAACATAAAGC‑CGCCCATTAAACTGAAAAAGTTTGTACGCGATGCTTTCCTCTATGAATGAAAATGGCCCCAAATGTTTCATCTTTTGCGGGa                                                                                                                       >  2:353028/1‑149 (MQ=255)                              ctcCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGC‑CAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGgaaaa                                                                                                                   >  2:672903/1‑148 (MQ=255)                                  aaaaaCCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATCTTAAGC‑CAACAAATAAAGTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgtg                                                                                                               <  1:778118/149‑1 (MQ=255)                                  aaaaaCCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGC‑CAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgtg                                                                                                               <  2:554534/149‑1 (MQ=255)                                        caccTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGC‑CAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAgtgt                                                                                                         >  2:507095/1‑149 (MQ=255)                                             cATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGC‑CAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCa                                                                                                    <  1:552972/149‑1 (MQ=255)                                                        aaCATCTATAAATAAAGATAACAATAGAATATAAAGC‑CTTCAAATGAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGt                                                                                         <  1:658050/149‑1 (MQ=255)                                                           aTCTATAAATAAAGATAACAATAGAATATTAAGC‑CAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCACAAAGGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa                                                                                      <  1:380915/149‑1 (MQ=255)                                                              tataAATAAAGATAACAATAGAATATTAAGC‑CAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaa                                                                                   >  1:391609/1‑149 (MQ=255)                                                                           aaCAATAGAATATTAAGC‑CAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACa                                                                      >  1:675853/1‑149 (MQ=255)                                                                               aTAGAATATTAAGC‑CAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAAc                                                                  <  1:188134/149‑1 (MQ=255)                                                                                           gC‑CAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGt                                                      >  1:391324/1‑149 (MQ=255)                                                                                            c‑cAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGGCCATGTc                                                     >  1:30198/1‑149 (MQ=255)                                                                                                 caaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGAtt                                                 >  1:620458/1‑149 (MQ=255)                                                                                                  aaaTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGAttt                                                >  2:397549/1‑149 (MQ=255)                                                                                                    aTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAg                                              >  2:690536/1‑149 (MQ=255)                                                                                                                      tCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaagg                            >  1:667270/1‑149 (MQ=255)                                                                                                                             tGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAagcag                     >  1:217521/1‑149 (MQ=255)                                                                                                                               cTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAgcagca                   <  1:400401/149‑1 (MQ=255)                                                                                                                                tttCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATATCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCAt                  >  2:471193/1‑149 (MQ=255)                                                                                                                                tttCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGGGTTGGCAGTCAAACTCGTGTACAAAACAAAGTGTACAGAACGACTGCCCCTGTCGATTTTGGAATAGTTTGTTTGAAGGACAggagcaa                  >  1:351949/1‑148 (MQ=255)                                                                                                                                     tctATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGCTTCAGAAATAGTTTTTTGAAAGGAACGCAGCATGacac             >  2:266160/1‑146 (MQ=255)                                                                                                                                      ctATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAAt            >  2:170593/1‑149 (MQ=255)                                                                                                                                             tCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAAct     >  2:191772/1‑149 (MQ=255)                                                                                                                                                aaaTGTCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTg  <  2:183675/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                   GTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGC‑CAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTG  >  NC_000913_3_hsa_tpiA/4542824‑4543114

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.