New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 1299498	0 (0.000)	48 (1.020)	44/274	0.1	100%	intergenic (+253/‑1684)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
	?	NC_000913_3_hsa_tpiA	1300698 =	0 (0.000)					intergenic (+1453/‑484)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

ACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCA‑GAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGTCAAT  >  NC_000913_3_hsa_tpiA/1300550‑1300844                                                                                                                                                     |                                                                                                                                                    ttctcaaattacagttagttataaggatttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaa                                                                                                                                                     <  2:599727‑M2/1‑1 (MQ=255)     caaattacagttagttataaggatttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaataat                                                                                                                                                 <  2:470601‑M2/5‑1 (MQ=255)        attacagttagttataaggatttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaataataat                                                                                                                                              <  1:365791‑M2/8‑1 (MQ=255)              gtttgttataaggatttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTg                                                                                                                                        <  1:488134‑M2/14‑1 (MQ=255)               ttagttataaggattttcttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGt                                                                                                                                       >  1:738781‑M2/135‑149 (MQ=255)                   ttataaggatttccttaacttcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTaaa                                                                                                                                   <  1:652572‑M2/19‑1 (MQ=255)                     ataaggatttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAatt                                                                                                                                 >  2:235522‑M2/129‑149 (MQ=255)                      taaggatttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAatta                                                                                                                                >  2:231207‑M2/128‑149 (MQ=255)                             ttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCa                                                                                                                         <  1:694912‑M2/29‑1 (MQ=255)                              tccttaactgcttctcctcaccatcatgttattttcgccaaataatactcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCAt                                                                                                                        >  2:142850‑M2/120‑149 (MQ=255)                                     ctgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCacta                                                                                                                 >  1:329919‑M2/113‑149 (MQ=255)                                           ctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCATTTGTTAAATTATTGTGCATTTCATTTctggta                                                                                                           >  2:278624‑M2/107‑147 (MQ=255)                                              ctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTg                                                                                                        >  2:807931‑M2/104‑149 (MQ=255)                                                   catcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATc                                                                                                   >  1:106656‑M2/99‑149 (MQ=255)                                                    atcatgttattttctccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATc                                                                                                   >  1:730389‑M2/98‑148 (MQ=255)                                                    atcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATc                                                                                                   <  2:730389‑M2/51‑1 (MQ=255)                                                       atgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATTATCAATTGTTAAATAATTTTGCGTTTGATTACTGGAACTTTAAACA‑Gaa                                                                                              >  1:114729‑M2/95‑149 (MQ=255)                                                       atgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCA‑Gaa                                                                                              <  1:807931‑M2/55‑1 (MQ=255)                                                          ttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCA‑GAAAAg                                                                                           >  1:399297‑M2/92‑149 (MQ=255)                                                          ttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCA‑GAAAAg                                                                                           >  2:677133‑M2/92‑149 (MQ=255)                                                           tattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCA‑GAAAAGa                                                                                          >  1:355571‑M2/91‑149 (MQ=255)                                                             ttttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaataata                                                                                                                                                <  1:29826‑M2/6‑1 (MQ=255)                                                             ttttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaataata                                                                                                                                                >  2:29826‑M2/89‑94 (MQ=255)                                                                    cacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCA‑GAAAAGATAGACATGc                                                                                 >  2:40745‑M2/82‑149 (MQ=255)                                                                    cacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCA‑GAAAAGATAGACATGc                                                                                 >  2:828044‑M2/82‑149 (MQ=255)                                                                      catcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCA‑GAAAAGATAGACATGCtt                                                                               <  1:231207‑M2/70‑1 (MQ=255)                                                                        tcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAGTTGTTAAATTATTGTGCATTTCACTTCTGGAACTGTAATCA‑GAAAAGATAGACATgctttg                                                                             <  2:738781‑M2/72‑3 (MQ=255)                                                                           taatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCA‑GAAAAGATAGACATGCTTAGCCa                                                                          <  2:355571‑M2/75‑1 (MQ=255)                                                                            aatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCA‑GAAAAGATAGACATGCTTAGCCaa                                                                         <  1:513410‑M2/76‑1 (MQ=255)                                                                             atcctgggtttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGCTAAATTATTGTGCATTGCACTACTGGAACTGTAATCA‑GAAAAGATCGACATGCTTAGCCAAt                                                                        <  2:763128‑M2/77‑1 (MQ=255)                                                                               cctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGGAAAAGATAGACATGCTTGGCCAata                                                                       >  1:322388‑M2/71‑148 (MQ=255)                                                                                 tgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTTTGCATTTCACTACTGGAACTGTATTCA‑GAAAAGATAAACATGCTTAGCCAATccct                                                                    >  2:666634‑M2/69‑149 (MQ=255)                                                                                    gcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCA‑GAAAAGATAGACATGCTTAGCCAATCTCTAtt                                                                 <  1:33516‑M2/84‑1 (MQ=255)                                                                                     cttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCA‑GAAAAGATAGACATGCTTAGCCAATCTCTAttt                                                                <  1:235522‑M2/85‑1 (MQ=255)                                                                                                  gattgaaaagagagtttaaagtccactgcgtttgttagaggaaagtgctcaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTTGAACTGTAATCA‑GAAAAGATAGACATGCTTAGCCAATCTCTATTTGTTTGAATTGaaa                                                   <  1:534293‑M2/98‑1 (MQ=255)                                                                                                   attgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCA‑GAAAAGATAGACATGATTAGCCAATCTCTATTTGATTGAATTGAAAg                                                  <  2:609560‑M2/99‑1 (MQ=255)                                                                                                         atgcgattattaatgccactgcctttggtagaggaaagttctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCA‑GAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGAtgttt                                            <  2:716620‑M2/105‑1 (MQ=255)                                                                                                         atgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCA‑GAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGAtgttt                                            <  1:301385‑M2/105‑1 (MQ=255)                                                                                                           gatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCA‑GAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGAtgtttgt                                          <  1:531536‑M2/107‑1 (MQ=255)                                                                                                                 attaattccactgcctttggtagaggaaagtgctaaATAATAATCAATAGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCA‑GAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATCTTTGTTAAGGc                                    >  2:652878‑M2/37‑149 (MQ=255)                                                                                                                         cactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCA‑GAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGc                            >  1:114327‑M2/29‑149 (MQ=255)                                                                                                                          actgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCA‑GAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCa                           >  2:594920‑M2/28‑149 (MQ=255)                                                                                                                           ctgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCA‑GAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCaa                          >  1:437019‑M2/27‑149 (MQ=255)                                                                                                                           ctgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCA‑GAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCaa                          <  1:659826‑M2/123‑1 (MQ=255)                                                                                                                            tgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCA‑GAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAg                         <  1:40745‑M2/124‑1 (MQ=255)                                                                                                                               ctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCA‑GAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCta                      <  1:129777‑M2/127‑1 (MQ=255)                                                                                                                                tttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCA‑TAAAAGATAGACATGCTTAGCAAATATATATTTGATTGAATTGAAAGGTGTTTGTTACGGCATGGGTGCAAACtat                     >  1:423146‑M2/22‑149 (MQ=255)                                                                                                                                          gaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCA‑GAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGAt           >  1:51913‑M2/12‑149 (MQ=255)                                                                                                                                                   aaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCA‑GAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGTCAAt  >  1:99179‑M2/3‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    ACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCA‑GAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGTCAAT  >  NC_000913_3_hsa_tpiA/1300550‑1300844

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.