New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 1299498	0 (0.000)	30 (0.820)	28/272	0.4	100%	intergenic (+253/‑1684)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
	?	NC_000913_3_hsa_tpiA	1300698 =	0 (0.000)					intergenic (+1453/‑484)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

GGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAA‑ATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGT  >  NC_000913_3_hsa_tpiA/1300555‑1300840                                                                                                                                                |                                                                                                                                                aaattacagttagttataaggatttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgttgaagaataattgaaatgatattattaattccactgcctttggtagaggcaagtgctaaataataa                                                                                                                                           >  2:490519‑M2/144‑150 (MQ=255)       cagttagttataaggatttccttaactgcttctcctccccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAAtt                                                                                                                                     <  1:150430‑M2/13‑1 (MQ=255)         gttagttataaggatttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGt                                                                                                                                   >  1:529363‑M2/136‑150 (MQ=255)          ttagttataaggatttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGtt                                                                                                                                  >  2:388492‑M2/135‑150 (MQ=255)              ttataaggatttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaatcctactccccttggttgaggaaagtgctaaATAATAATCAATTGTTAA‑at                                                                                                                             >  2:566490‑M2/131‑150 (MQ=255)                  aaggatttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAA‑attatt                                                                                                                         <  1:102480‑M2/24‑1 (MQ=255)                    ggatttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAA‑ATTATtgt                                                                                                                       >  1:590134‑M2/125‑150 (MQ=255)                     gatttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAA‑ATTATtgtg                                                                                                                      >  1:465405‑M2/124‑150 (MQ=255)                                 tgcttctcctcaccatcatgttataatcgccgcatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAA‑ATTATTATGCATTTCactact                                                                                                          >  2:376497‑M2/112‑150 (MQ=255)                                  gcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAA‑ATTATTGTGCATTTCACTACTg                                                                                                         >  1:270944‑M2/111‑150 (MQ=255)                                         ctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAA‑ATTATTGTGCATTTCACTACTGGAACTGt                                                                                                  >  2:603039‑M2/104‑150 (MQ=255)                                            accatcctgttattttcgccacatcataatcctgggcttgctgacagatgcttctaattatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAA‑ATTATTGTGCATTTCACTACTGGAACTGTAAt                                                                                               <  1:186685‑M2/50‑1 (MQ=255)                                                            cgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAA‑ATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACAt                                                                               <  1:603039‑M2/66‑1 (MQ=255)                                                              ccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTTA‑ATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACAtgg                                                                             <  2:502970‑M2/68‑2 (MQ=255)                                                                       aatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAA‑ATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAAt                                                                    <  1:249622‑M2/77‑1 (MQ=255)                                                                         tcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAA‑ATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAAtct                                                                  <  2:270944‑M2/79‑1 (MQ=255)                                                                           ctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAA‑ATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATctct                                                                <  1:144365‑M2/81‑1 (MQ=255)                                                                                    ctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAA‑ATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATttgattg                                                       >  2:563059‑M2/61‑150 (MQ=255)                                                                                     tgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAA‑ATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCACTATttgattga                                                      >  2:463927‑M2/60‑150 (MQ=255)                                                                                                   aatgatattaataattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAA‑ATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGAtgttt                                        <  1:393654‑M2/105‑1 (MQ=255)                                                                                                                 ttcacctgcctttggtagaggaaagtgctaaATAATAATAAATTGTTAA‑ATTATTGTGCATTTCACTACTGGAACTGTCATCAGAATAGAGTGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGAt                          <  1:225161‑M2/119‑1 (MQ=255)                                                                                                                  tccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAA‑ATTATTGTGCAttt                                                                                                                 <  2:18421‑M2/32‑1 (MQ=255)                                                                                                                  tccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAA‑ATTATTGTGCAttt                                                                                                                 >  1:18421‑M2/31‑62 (MQ=255)                                                                                                                    cactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAA‑ATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGattgaat                                                    <  2:639063‑M2/93‑1 (MQ=255)                                                                                                                    cactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAA‑ATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGattgaat                                                    >  1:639063‑M2/29‑121 (MQ=255)                                                                                                                     actgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAA‑ATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCaa                      <  1:127221‑M2/123‑1 (MQ=255)                                                                                                                       tgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAA‑ATTATTGTGCATTTCACTACTGGAACTGTAATCAGACAAGATAGACATGCTTAGCCAATCACTATTTGATTGAGTTGAACGATGTTTGGTAAGGCATGGAGGCAAGc                    >  1:254926‑M2/26‑150 (MQ=255)                                                                                                                          ctttggtagaggaaagtgctaaATAATAATCAATTGTTAA‑ATTATTGTGCATTTCACTACTGGAACTGTAAt                                                                                               >  1:83607‑M2/23‑72 (MQ=255)                                                                                                                          ctttggtagaggaaagtgctaaATAATAATCAATTGTTAA‑ATTATTGTGCATTTCACTACTGGAACTGTAAt                                                                                               <  2:83607‑M2/50‑1 (MQ=255)                                                                                                                                tagaggaaagtgctaaATAATAATCAATTGTAAACATCACGGT‑CGTTTCACTACGGTCACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTGGTTAAGGCAGGGATGCAAGCTATCGATTc           >  1:159543‑M2/17‑150 (MQ=255)                                                                                                                                         atactaaATAAAAATCAATTGTTAA‑ATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGt  <  2:364124‑M2/143‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                GGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAA‑ATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGT  >  NC_000913_3_hsa_tpiA/1300555‑1300840

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.