| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 1207790 = | 6 (0.110) | 35 (0.750) | 29/252 | 0.8 | 80.2% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_hsa_tpiA | 1209619 = | 12 (0.260) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
ATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCA > NC_000913_3_hsa_tpiA/1209473‑1209759 | agaggcagatgcttttgcggcattccgcccccactgaatgattactgattgctcaataccaccaatcatcaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGt < 1:282546‑M2/3‑1 (MQ=255) gATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaac > 1:895248/1‑148 (MQ=255) atgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGaaa > 2:824942‑M2/139‑149 (MQ=255) gcttttgcggcattccccccccactgaatgattagtgattgctcaataccgccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAt < 2:176507‑M2/13‑1 (MQ=255) ttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagtttggctccctcccccaaaccaaCGGTTATGAAAAG‑ga > 2:126822‑M2/135‑149 (MQ=255) tttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAT‑gaa < 1:161181‑M2/16‑1 (MQ=255) tttGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGGCTTCTCCCAACCCAACGTTTATGAAAAT‑gaagaa > 1:184608/1‑149 (MQ=255) cattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAT‑GAAGAAATaa < 2:551535‑M2/23‑1 (MQ=255) gattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAT‑GAAGAAATAACAAGCaaa < 2:539306‑M2/31‑1 (MQ=255) gattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAT‑GAAGAAATAACAAGCaaa > 1:539306‑M2/108‑138 (MQ=255) agcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTc < 2:517087/149‑1 (MQ=255) gcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAT‑GAAGAAATAACAAGCAAATAGCATCATTcc > 1:160217/1‑149 (MQ=255) ttactgattgcccaataccacccatcataaccggtatagctatgaaaacggggcgtcctaatgtcgctggatccgcattgagtactgatccttcccccaaaccaaCGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCt < 1:213173‑M2/44‑1 (MQ=255) actgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGc < 1:207022‑M2/46‑1 (MQ=255) actgattgctcaataccaccaatcagaaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccatCTTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGc < 1:583485‑M2/46‑1 (MQ=255) ttattgctcaataccaccaaccataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgccccttctcccaaaccaaCGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGttt < 1:409501‑M2/48‑1 (MQ=255) tgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCtt < 1:220930‑M2/48‑1 (MQ=255) gattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCttt < 1:458038‑M2/49‑1 (MQ=255) tcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctcattcttccaaaccaaCGTTGATGAAAAT‑GAAGAAATAACAAGCAAAGGGCATCATGCCTGCTTTTACCAg > 2:893841‑M2/95‑149 (MQ=255) taccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggggg > 2:653374‑M2/91‑149 (MQ=255) caccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgtgactgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAT‑GAAGAAATAACAACAAAATGGCATCATTCCTGCTTttacaaggaacatt > 2:852573‑M2/88‑143 (MQ=255) gCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGCACACCAACAGGTAATGCAGAGCCTTCTCCCAAACAAACGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAttt > 1:799471/1‑149 (MQ=255) accaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTTCTTTTACCAGGGGGAttt > 2:798402‑M2/87‑149 (MQ=255) accaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAttt > 1:446850‑M2/87‑149 (MQ=255) caatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTaa < 1:160224‑M2/65‑1 (MQ=255) cataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATg > 1:384769‑M2/81‑149 (MQ=255) cagccagcCTGTTGGCGGAGTGGCTGAAGGCCATGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATg < 2:745083/149‑1 (MQ=255) agccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCGCAAACCAACGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGc < 2:767428/149‑1 (MQ=255) gtatagttaggaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg < 1:115482‑M2/77‑1 (MQ=255) gtatagctatgaaaccggtgcgttctaatgtcgcctttgctgcattgagtttgactccttctcccaaaccaaCGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg < 1:526199‑M2/77‑1 (MQ=255) tgatctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAAAATGCTTATTGGCt > 2:385744‑M2/71‑149 (MQ=255) ggCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTa > 2:438765/1‑103 (MQ=255) ggCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTa < 1:438765/103‑1 (MQ=255) cctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATg < 1:772119‑M2/100‑1 (MQ=255) aatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAcc > 2:751354‑M2/47‑149 (MQ=255) tagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGaa < 1:751354‑M2/107‑1 (MQ=255) cGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAcgc < 2:177301/128‑1 (MQ=255) cGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAcgc > 1:177301/1‑128 (MQ=255) gccgttgctgcattgagttttgctctttctcccaaaccaaCGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCATGCCCTGACCGAGCAAATACAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAaca < 1:893841‑M2/109‑1 (MQ=255) gccgttgctgcattgagttttgctccttctcaaaaccaaaCGTTT‑TGCATGTGGAAGAAAGAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAaca < 1:70857‑M2/109‑1 (MQ=255) gcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTAc > 2:69700‑M2/32‑149 (MQ=255) aGGTAATGCAGAGCCTTCTCCCAAACCACCGCCTACCAAAAC‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACaa < 1:475365/149‑1 (MQ=255) ttgagttttgctccttctcccaaaccaaCGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAAc < 1:126822‑M2/121‑1 (MQ=255) ttgagttttgctccttctcccaaaccaaCGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAAc > 1:542540‑M2/29‑149 (MQ=255) ttttgctccttctcccaaaccaaCGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAAt < 2:384769‑M2/126‑1 (MQ=255) tgctccttctcccaaaccaaCGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATgcg < 1:77900‑M2/129‑1 (MQ=255) ctccttctcccaaaccaaCGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAATTAGGGTTCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCt < 1:852573‑M2/131‑1 (MQ=255) cttctcccaaaccaaCGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGaa < 2:740232‑M2/134‑1 (MQ=255) ccaaaccaaCGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGCactgtcc > 2:294530‑M2/10‑147 (MQ=255) ccaaaccaaCGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGc > 2:109929‑M2/10‑149 (MQ=255) taaacaaaTGTTAATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCATGGGGATTTAACTTGCTTATTGGCTATGTACGCGTATCAACATATAAACCGGACACAGCTCTACAACGTAATGCGCTGAACTGTGCa < 2:381814‑M2/141‑1 (MQ=255) caaaccaaCGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACACGCTTATTGGCTATGTACGCGTATTAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCa < 2:481235‑M2/141‑1 (MQ=255) aaCGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCt > 2:714853‑M2/3‑81 (MQ=255) aaCGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCt < 1:714853‑M2/79‑1 (MQ=255) | ATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAT‑GAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCA > NC_000913_3_hsa_tpiA/1209473‑1209759 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |