New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	2729630 =	NA (NA)	10 (0.220)	9/270	4.2	NA	noncoding (1528/1542 nt)	rrsG	16S ribosomal RNA of rrnG operon
	?	NC_000913_3_hsa_tpiA	2729652 =	NA (NA)					noncoding (1506/1542 nt)	rrsG	16S ribosomal RNA of rrnG operon
Rejected: Coverage evenness skew score above cutoff.

TGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAG  >  NC_000913_3_hsa_tpiA/2729482‑2729709                                                                                                                                                      |                                                                                tgtAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCa                                                                                 >  2:298102/1‑149 (MQ=255)         gAGCTTTCATTAATAGAAAGCGCACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAgg                                                                         <  2:564657/149‑1 (MQ=255)           gCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAACACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGtt                                                                       >  2:517912/1‑149 (MQ=255)            cTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTc                                                                      >  2:542152/1‑149 (MQ=40)             tttCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTcc                                                                     <  1:298102/149‑1 (MQ=255)                 aTTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTa                                                                 >  2:100541/1‑149 (MQ=255)                 aTTAATAGAAAGCGAACGGCCTTAGTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTa                                                                 >  1:716856/1‑149 (MQ=255)                  ttAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAGGGAGGTGATCCAACCGCAGGTTCCCCTAc                                                                >  2:488141/1‑149 (MQ=255)                              gAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAgg                                                                         <  2:743805/128‑1 (MQ=255)                              gAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAgg                                                                         >  1:743805/1‑128 (MQ=255)                                  ggCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGa                                                >  2:528235/1‑149 (MQ=255)                                   gCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGtt                                                    <  1:716469/144‑1 (MQ=255)                                   gCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGtt                                                    >  2:716469/1‑144 (MQ=255)                                     tttATTCTCGCTAGCCTCACTTCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTTTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGATGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACtt                                             <  2:408647/148‑1 (MQ=14)                                                  gCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATg                                >  1:554554/1‑149 (MQ=255)                                                      cACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATc                            <  1:561103/149‑1 (MQ=39)                                                           ccAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACaaa                       >  2:677/1‑149 (MQ=40)                                                                     aaCGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAATGGTAAgcg             >  2:488067/1‑149 (MQ=255)                                                                          cTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAGAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTaa                <  2:781556/141‑1 (MQ=255)                                                                          cTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTaa                >  1:781556/1‑141 (MQ=39)                                                                               tATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGaa   <  1:459892/149‑1 (MQ=35)                                                                               tATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGAAGGTGATCCAACCGCAAGTTCCCCTACGGTTTCTTACTTTTGTCTTTACCCCAGTCATGAATCTCAAAGTGGTAAGGGCCCCCCCgca   >  1:158399/1‑147 (MQ=11)                                                                                aTTCACTTTTCCTCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTATCGCTTCCGA‑TTTATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAg  <  1:607640/149‑1 (MQ=11)                                                                                aTTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGtt                                                    <  1:56895/99‑1 (MQ=37)                                                                                aTTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGtt                                                    >  2:56895/1‑99 (MQ=37)                                                                                aTTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAg  <  1:11607/149‑1 (MQ=34)                                                                                   cACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCAcc                                         <  2:381219/107‑1 (MQ=32)                                                                                   cACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCAcc                                         >  1:381219/1‑107 (MQ=32)                                                                                   cACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATc                            >  1:609753/1‑120 (MQ=32)                                                                                   cACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATc                            <  2:609753/120‑1 (MQ=32)                                                                                                                                                      |                                                                                TGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAG  >  NC_000913_3_hsa_tpiA/2729482‑2729709

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.