New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 1351239	42 (0.900)	9 (0.200)	7/270	4.9	18.9%	intergenic (‑200/+168)	fabI/ycjD	enoyl‑[acyl‑carrier‑protein] reductase, NADH‑dependent/DUF559 family endonuclease‑related protein
	?	NC_000913_3_hsa_tpiA	3608707 =	37 (0.820)					intergenic (+58/+44)	zntA/tusA	zinc, cobalt and lead efflux system/mnm(5)‑s(2)U34‑tRNA 2‑thiolation sulfurtransferase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACCGGGTTGTGGCTGGCAGTGCTGGCAGATACGGGGGCGACGGTGCTGGTGACAGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGG‑CAAACCGATCGCAACATTGAGCG‑CGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATAAAGGTACAAAACCCAGGAATATCGCGGG  >  NC_000913_3_hsa_tpiA/3608563‑3608851                                                                                                                                                   |                                                                                                                                                 acagggTTGAGGGTAGCATAGATGGTAGATACGGGGGACGCGGTGCTGGTGATAATGAAAGCGTAAAGATTGTAACGGAGGAGATAAGG‑CAAACAGAACGAAACATTGTGCG‑CGATCGGTCCCCTCGCCCCCCTGCGGAGAGGGTTAgg                                                                                                                                              <  2:491219/146‑1 (MQ=255)   cGGGTTGTGGCTGGCAGTGCTGGCAGATACGGGGGCGACGGTGCTGGTGACAGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGG‑CAAACCGATCGCAACATTGAGCG‑CGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGt                                                                                                                                            >  1:462763/1‑149 (MQ=255)   cGGGTTGTGGCTGGCAGTGCTGGCAGATACGGGGGCGACGGTGCTGGTGACAGCGAATGCGTTAAGATTGTCGCGCAGGAGATAAGG‑CAAACCGATCGCAACATTGAGCG‑CGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGt                                                                                                                                            >  1:734568/1‑149 (MQ=255)     gggtgtgGCTGGCAGTGCTGGCAGATACGGGGGCGACGGTGCTGGTGACAGCGAATGCGTTAAGATCGTTGCGCAGGAGATAAGG‑CAAACCGATCGCAACATTGAGCG‑CGATCGGTCCCCCCCCCCCTCTGGGGAGAGGGTTAGGGTGa                                                                                                                                          <  2:508804/146‑1 (MQ=255)                 tacgtggggCAGATGAGGGGGCGAAGGGGCGGGTGACAGCGAAGGCGTTAAGATTGTTGCGCAGGAGATAAGG‑CAAACCGATCGCAACATTGAGCG‑CGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAggcg                                                                                                                              <  2:71163/142‑1 (MQ=37)                 caggggtGGCGGAGACGGGGGCGACGGTGCGGGTGACAGCGGATGCGTTAAGATTGTGGCGCAGGAGATAAGG‑CAAACCGATCGCAACATTGGGCG‑CGATCGGCCCCCTCGCCCCTCTCGGGAGCGGGATCGGGTCAGAGCAAAAggcg                                                                                                                              <  2:286719/143‑1 (MQ=255)                 cAGTGGTGGCAGATAGGGCGACGACGGTGCTGGTGACAGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGG‑CAAACCGATCGCAACATGGAGCG‑CGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAggcg                                                                                                                              <  1:524731/149‑1 (MQ=38)                  aggggtGGCAGTTAGGGGGGGGAGGGGGTGGGGGACAGCAAATGCGTTAAGATTTTTGCCAAGAAGACAAGG‑CAACCCAATCGCAACATTAGGCG‑CGATCGGCCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGGGAGGGGAAAAggcgg                                                                                                                             <  2:494333/144‑1 (MQ=16)                  aGTGCTGGCAGATACGGGGGCGACGGTGCTGGTGACAGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGG‑CAAACCGATCGCAACATTGAGCG‑CGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAggcgg                                                                                                                             >  2:566431/1‑149 (MQ=255)                       tGGCAGATACGGGGGCGACGGTGCTGGTGACAGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGG‑CAAACCGATCGCAACATTGAGCG‑CGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCg                                                                                                                        >  1:379877/1‑149 (MQ=255)                                  ggggCGACGGTGCTGGTGACAGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGG‑CAAACCGATCGCAACATTGAGCG‑CGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTa                                                                                                                                                <  2:705265/114‑1 (MQ=255)                                  ggggCGACGGTGCTGGTGACAGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGG‑CAAACCGATCGCAACATTGAGCG‑CGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTa                                                                                                                                                >  1:705265/1‑114 (MQ=255)                                               tGGTGACAGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGG‑CAAACCGATCGCAACATTGAGCG‑CGAACGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCg                                                                                                >  1:499075/1‑149 (MQ=255)                                                 gTGACAGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGG‑CAAACCGATCGCAACATTGAGCG‑CGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAAGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGcc                                                                                              >  2:811431/1‑149 (MQ=255)                                                     aggCGAACGCGTTAAGATTGTGGCGAAGGAGACAGGG‑CAACCCGATCGCAACATTGAGCG‑CGATCGGCCCCTTCGCCCCTCTGGGGAGAGGGTTAGGGTGGGGGAAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTa                                                                                          <  2:680085/147‑1 (MQ=38)                                                          aaTGCTTTAACATTCGTCCGCAGGAAATACGG‑AAAACCTATCGCAACA‑TGGGCGCCGACCGGCCCCCTCCCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAAt                                                                                     <  1:96243/149‑1 (MQ=25)                                                              cGTTAAGATTGTTGCGCAGGAG‑TAAGGCCAAACCGATGGAAATATTGAGCG‑CGATCGGTCCCCTCCCCCCTGTGGGGAGGGGTGTGGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCaaa                                                                                 <  1:338700/149‑1 (MQ=255)                                                                ttAAGATTGTTGCGCAGGAGATAAGG‑CAAACCGATCGCAACATTGAGCG‑CGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATa                                                                               >  1:552125/1‑149 (MQ=255)                                                                 tAAGATTGGGGCGAAGGAGAGAAGG‑AAAACCGATTGCAAATTTGAGCG‑CGACGGGTCCCCCCGCCCCCCGGGGGAGAGGGTTAGGGTGAGGGAAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATaa                                                                              <  2:89871/149‑1 (MQ=255)                                                                     aTTGTTGCGCAGGAGATAAGG‑CAAACCGATCGCAACATTGAGCG‑CGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCACCCGCCTTTACGAATCAAATAACGAt                                                                          >  1:15602/1‑149 (MQ=255)                                                                            cgcAGGGGATAAGG‑CAACCCGATGGGAAAATGGAGCG‑CGATCGGTCCCCGGGCCCCTCAGGGGGGAGGGTTTGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAg                                                                   <  2:506607/149‑1 (MQ=255)                                                                                  agaTAAGG‑CAAACCGATCGCAACATTGAGCG‑CGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCCATCAACCGCCTCTACGAATCAAATAACGATAAGGCAGTCCATc                                                             >  2:188945/1‑149 (MQ=255)                                                                                              aCCGACCCCAACTTTGGGCG‑GGTTCGGCCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGGGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAg                                                  <  1:743029/149‑1 (MQ=38)                                                                                               ccGATCGCAACATTGAGCG‑CGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATACGGCAGTCCATCACTCTATTTAGc                                                 >  2:66824/1‑149 (MQ=255)                                                                                                cGATCGCAACATTGAGCG‑CGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGAGATGTGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATACAGCAGTCCATCCGTCTCTTTCGCa                                                >  1:27646/1‑149 (MQ=39)                                                                                                      cAACATTGAGCG‑CGATCGGTCCCCTCGCCACTCTGGGGAGAGGGATAGGGTGAGGGGCAAAAGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGTATCAAATAACGATAAGGCAGTGCATCCGTCTCTTTAGCAATCAGt                                          >  1:698707/1‑149 (MQ=255)                                                                                                           ttGAGCG‑CGATCGGTCCCCTCGCCCCTCTGGGGGGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTGACGAATCAATTAACGATAAGGAAGTCCAGCCGTCACTTTCGAACCCAGTTCgtg                                     >  1:413757/1‑149 (MQ=37)                                                                                                                cg‑cgATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGATGGGAACAGGCGGCATCGAAGCCAAACAGCCCCTATCAACCGCCTTTACGAAGCGACTAACGATAAGGCAGTCCATGCGTCTCTTTAGCAACCAGTTCGTGTTCCa                                >  2:440316/1‑149 (MQ=38)                                                                                                                    gATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCGTATCAACCGCCTTTACGAATCAAATAACGCTAAGGCAGGCCATCCGGCTCTTTAGCAACCAGTTCGTGTTCCAtca                             >  2:356739/1‑147 (MQ=255)                                                                                                                    gATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATaa                             >  1:334766/1‑149 (MQ=255)                                                                                                                      cccgcccccccccccccCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATAAAg                           <  1:205122/144‑1 (MQ=255)                                                                                                                         gTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATAAAGGTa                        >  1:592435/1‑149 (MQ=255)                                                                                                                         gTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTGTAGCAACCAGTTCGTGTTCCATAAAGGTa                        >  1:710534/1‑149 (MQ=255)                                                                                                                          tCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTCTCAACCGCCTTTACGAATCAAATAACGATAAGGCATTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATAAAGGTAc                       >  1:626099/1‑149 (MQ=255)                                                                                                                            cccTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATAAAGGTACaa                     >  1:268735/1‑149 (MQ=255)                                                                                                                                      tctGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATAAAGGTCCAAAACCCAGGaa           >  2:35476/1‑149 (MQ=255)                                                                                                                                            gagaGGGTTAGGGTGAGGGGCAACGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTAAGAACCAAATAACGATAAGGCAGTCCATCCCTCTCTTTAGCAACCAGTTCGTGTTCCTTAAAGATACAAAACCCCGGACTATcgc     >  2:741993/1‑149 (MQ=255)                                                                                                                                               agGGTTAGGGCGAGGTGGAAAGGCGGCATCGAAGCTAATGCGCCCCTATTAACCTGCTTTACGAATTAATTAACGACACGGCAGGCCATCCGTCTCATGAGCAACCAGTTCGTGTTCCATATAGGTACAAACCCCAGCAAGACCTCggg  <  2:361376/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                 ACCGGGTTGTGGCTGGCAGTGCTGGCAGATACGGGGGCGACGGTGCTGGTGACAGCGAATGCGTTAAGATTGTTGCGCAGGAGATAAGG‑CAAACCGATCGCAACATTGAGCG‑CGATCGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCATCGAAGCCAATCAGCCCCTATCAACCGCCTTTACGAATCAAATAACGATAAGGCAGTCCATCCGTCTCTTTAGCAACCAGTTCGTGTTCCATAAAGGTACAAAACCCAGGAATATCGCGGG  >  NC_000913_3_hsa_tpiA/3608563‑3608851

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.