| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | = 227052 | 38 (0.990) | 8 (0.220) | 8/268 | 3.3 | 17.5% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_tpiA | = 4038792 | 39 (1.060) | noncoding (1274/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGATGTAACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGC > NC_000913_3_hsa_tpiA/4038645‑4038874 | aGATGTAACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATaaa < 1:186477/149‑1 (MQ=255) aTGTAACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGc > 2:536227/1‑149 (MQ=255) gTAACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTCAACGCAACT‑TGAATGCTGACATAAGTAACGATAAAGCgg < 2:655296/149‑1 (MQ=14) gagcGGGGCTAAACCATGCACCTAAGCTTCCGCAGCGACACGGTGTGGGGTGGGGTAGGGGAGCGTTCTGTAAGCTTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCggg < 1:313033/146‑1 (MQ=14) aaCGGGGTTAAACCATGCACCGAAGCGGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGt < 2:656443/149‑1 (MQ=255) aCGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTg > 1:654131/1‑149 (MQ=255) aCGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGGAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTg > 1:450130/1‑149 (MQ=255) aCGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTAGTCGGGGAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTg > 1:473751/1‑149 (MQ=255) cTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGc > 1:505935/1‑149 (MQ=255) tAAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTCGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGcc > 1:530595/1‑149 (MQ=255) cATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTc > 2:595338/1‑149 (MQ=255) aTGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCg > 2:513649/1‑149 (MQ=255) aCCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTCCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGAAATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCgg > 1:139887/1‑149 (MQ=255) cGAAGGTGCGGGAGGGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGaa < 2:245311/149‑1 (MQ=255) cGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGaa < 1:33272/149‑1 (MQ=255) gCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGATGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGAcc > 2:559006/1‑149 (MQ=255) cTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCATGCGAAAGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCAGCTCGCCGGAAGAcaa > 1:303956/1‑147 (MQ=255) aGCGGCACTTTGTGTGGTTGGGGAGGGGAGCGTTCTGTAAGTCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGTGTGCTGACATAATTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTc < 2:586337/149‑1 (MQ=11) gCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTcc > 2:216330/1‑149 (MQ=40) gACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGGAGACCAAGGGTTCCTg > 1:256696/1‑149 (MQ=38) cacTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTc < 1:93046/149‑1 (MQ=38) acTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTcc > 2:231614/1‑149 (MQ=38) agtggttgttGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAAc < 2:452656/145‑1 (MQ=17) aTGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCGGGAAGACCAAGGGTTCCTGTCCacc > 2:22953/1‑147 (MQ=25) tgtgTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGGGCGAATGCTGGAATAAGTAACAATAAAACGGGTGAAAAGCGCGCCACCCGGAAGGGCAAGGGTTACTGTCCAACg > 2:72266/1‑149 (MQ=11) gggttgtgGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGt < 2:160863/147‑1 (MQ=17) gttgttGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAATGATAAAGCGGGTGAAAAGCACGCTCGCCGGAAGACCAAGGGTTCCTGTCAAACGTTa > 2:523911/1‑149 (MQ=12) gttgttGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTa > 1:121684/1‑149 (MQ=32) gttgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATc > 1:372985/1‑149 (MQ=32) ttgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGaaaa < 1:127928/105‑1 (MQ=33) ttgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGaaaa > 2:127928/1‑105 (MQ=33) ttgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGaa < 2:21428/120‑1 (MQ=32) ttgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGaa > 1:21428/1‑120 (MQ=33) ttgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCg < 2:192354/149‑1 (MQ=32) gggTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCAGGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCggg < 2:73462/149‑1 (MQ=17) gTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGc > 1:489884/1‑149 (MQ=32) gggAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAGTGCTGACATAAGTAAAGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACAAAGGGTTCCTGTCAACCGATAATCGGGGCAggg > 2:507384/1‑149 (MQ=11) cGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGt < 1:231614/149‑1 (MQ=32) cGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGGGAAAAGCCCGCTCGCCGGAAGAGCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGt > 2:467544/1‑149 (MQ=17) ttCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCg > 1:425282/1‑149 (MQ=32) tGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAcc > 2:406718/1‑149 (MQ=32) tGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAcc > 1:283901/1‑149 (MQ=32) tgtgAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGc > 2:493133/1‑149 (MQ=32) | AGATGTAACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGT‑ATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGC > NC_000913_3_hsa_tpiA/4038645‑4038874 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |