New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 224973	28 (0.450)	10 (0.170)	8/268	6.5	27.2%	noncoding (1203/1542 nt)	rrsH	16S ribosomal RNA of rrnH operon
	?	NC_000913_3_hsa_tpiA	2729972 =	NA (NA)					noncoding (1186/1542 nt)	rrsG	16S ribosomal RNA of rrnG operon
Rejected: Coverage evenness skew score above cutoff.

GCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCA‑ACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAGCGACCTCGCG  >  NC_000913_3_hsa_tpiA/224828‑225038                                                                                                                                                   |                                                                  gCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCA‑ACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCGAAGGAGATTGCCAGTGAGAAACTGACGGAAGGTCGCGACGACGTGCAGTCatgatg                                                                >  2:674683/1‑149 (MQ=11)        tcAGCTCATGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCA‑ACCCTAATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAACGGGACTGCCAGTGACAAACCGGGGGAAGGCGGGGAGGACGGCAAGTCATCATGGCCCtaa                                                         >  2:890351/1‑147 (MQ=11)             tCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCA‑ACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAACCTGGAGGAAGGTGGGGCTGACGTCACGTCATCATGGCACTTCGGAcc                                                    >  2:665772/1‑149 (MQ=11)              cGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCA‑ACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCa                                                   <  1:545157/149‑1 (MQ=32)               gggttgtGAAAGGGTAGGTTAAGGCCCGCAACGAGCGCA‑ACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAg                                                  <  2:890686/147‑1 (MQ=255)                     tgAAATGTTGGGTTAAGTCCCGCAACGAGCGCA‑ACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTac                                            >  2:402421/1‑149 (MQ=32)                       aaaTGTTGGGTTAAGTCCCGCAACGAGCGCA‑ACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCCTCATGGCCCTTACGACCAGGGCTccac                                          >  2:133006/1‑149 (MQ=17)                       aaaTGTTGGGTTAAGTCCCGCAACGAGCGCA‑ACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTacac                                          >  2:366550/1‑149 (MQ=32)                          tGTTGGGTTAAGTCCCGCAACGAGCGCA‑ACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACg                                       <  2:1087272/149‑1 (MQ=32)                            ttGGGTTAAGTCCCGCAACGAGCGCA‑ACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCTAGTGATATTCTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTg                                     <  1:58310/149‑1 (MQ=12)                            ttGGGGTGAGTCCCGCAACGAGCGCACACTCTT‑TCTTTTGTTGCCAGGGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTg                                     <  2:883027/149‑1 (MQ=11)                                     gTCCCGCAACGAGCGCA‑ACCCTTATCTTTTGTTGCCAGCGGTCCGGACGGGAACTCAAAGGAGACTGACAGTGATAAACTGGAGAGAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGATCAGGGCTACACCCGGGCTACCATgg                            >  1:989913/1‑149 (MQ=11)                                      tCCCGCAACGAGCGCA‑ACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGgc                           <  1:402421/149‑1 (MQ=32)                                        ccGCAACGAGCGCA‑ACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAACCTGGAGGAAGGTGGGGATGACGTCAAGTCATCCTGGCCCTTACGACCAGGGCTACACACGTGCCACAATGgcgc                         >  2:669202/1‑149 (MQ=12)                                        ccGCAACGAGCGCA‑ACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGCCTACACACGTGCTACacggccgc                         >  2:536031/1‑142 (MQ=12)                                         cGCAACGAGCGCA‑ACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACCCGTGCTACAAGGGCGCa                        >  2:565414/1‑149 (MQ=17)                                         cGCAACGAGCGCA‑ACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCa                        <  2:146086/149‑1 (MQ=32)                                               gAGCGCA‑ACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACaaa                  <  2:572060/149‑1 (MQ=32)                                               gAGCGCA‑ACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACaaa                  <  1:366550/149‑1 (MQ=32)                                                aGCGCA‑ACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAag                 <  1:440758/149‑1 (MQ=32)                                                  cgcA‑ACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACAAACGTGCTACAATGGCACATACAAagag               >  2:349849/1‑149 (MQ=17)                                                   gcA‑ACCCTTATCTTTTATTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGGCTGCCAGTGATAAACTGGAGGAGGGTGGGGATGACGTCAAGTCATCATGGCCCTTGCGACCAGGCCTACACACCTTCTACCCTTGCGCATACAAAgaga              >  2:289082/1‑149 (MQ=11)                                                       atccctATTTTTTATTGTCAGCGCGCCTTCCGGGAATTTAAAGGAGACTGCCAGTGTTAAACTGGAGTAAGGTGTCTATGACGTCAAGTCATCATGGCCCTTACTACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAGc           <  2:306693/144‑1 (MQ=11)                                                       aCCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAGc           <  2:697325/149‑1 (MQ=32)                                                         ccTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAGCGa         >  1:515800/1‑149 (MQ=32)                                                          cTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAGCGAc        <  1:906537/149‑1 (MQ=32)                                                            atacTTTTG‑TGCCGGCGGTCCGGCCGGTAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGCCATCCCGATCTTCACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAGCGACCTc     <  1:213834/146‑1 (MQ=11)                                                                ttttGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAGCGACCTcgcg  >  1:1000238/1‑149 (MQ=11)                                                                                                                                                   |                                                                  GCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCA‑ACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAGCGACCTCGCG  >  NC_000913_3_hsa_tpiA/224828‑225038

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.