New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 357155	39 (1.120)	3 (0.090)	3/264	NT	7.4%	coding (985/1284 nt)	codA	cytosine/isoguanine deaminase
	?	NC_000913_3_hsa_tpiA	= 357165	38 (1.140)					coding (995/1284 nt)	codA	cytosine/isoguanine deaminase

AATATTCATCTGCAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAG‑TCCGGCATTAACGTCTGCT‑TTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGCCTGAATTTAATCACCCACCACAGCGCAAGGACGTTGAATTTGCAGGATTACGGCATTGCCGCCGGAAACAGCGCCAACCTGA  >  NC_000913_3_hsa_tpiA/357008‑357302                                                                                                                                                      |                                                                                                                                                    aaTATTCATCTGCAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGCTAAAGAGATGCTGGAG‑TCCGGCATTAACGTCTGCT‑TTGGTCACGATGATGTCTTCGGTCCGTGGTATCCGCTGGGAACGGCGAGTAtgct                                                                                                                                                    >  2:606666/1‑149 (MQ=255)  ctatTCATCTGCAACGACGTTTCGATACGTATCCAAAGCGTCGCGCCATCACGCGCGTTAAAGAGATGCTGGAG‑TCCGGCCTTCAGGTCTGCT‑TTGGTCACCACGATGTCTTCCACCCCTCGTATACGCAGGGAAGGGCGCAGAtgctg                                                                                                                                                   >  2:42125/2‑149 (MQ=255)     gctctCTGCAAGGACGTCTCGATCCCGTTCCCAACCGGCTGGGCAGCCCGGGCGTTAAAGAGGTGCTGGAG‑TCCGGCATCAACGTCCCCTCTTGCTC‑CGAGGCCTCCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATAGGCTGCaa                                                                                                                                                <  2:74951/145‑1 (MQ=255)         tCTGCAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCACCACGCGCGTTAAAGAGGGCTTTAAG‑TCCTTCATTAACGTCTGCT‑TTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGtgc                                                                                                                                            >  2:635161/1‑149 (MQ=255)                ggACGGTTCGATACGGATCCAAATGGTCGCGGCATCACGCGCGTTAAAGTGATGCTGGAG‑TCCGGCATTAACGTCTGCT‑TTGGTCACGATGATGTCTTCGATCCGTGGTATCCTCTGGGAACGGCGAATATGCTGCAAGTGCTgcatat                                                                                                                                     >  2:75406‑M2/1‑143 (MQ=255)                 ggtgtgtcgatacGTATCCAAAAGATTGTTGCGTCACCCGCGTTAAAGCGATGCTGGTG‑TCCGGCATTAACGTCTTCT‑TTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCagcacttgcagcatatt                                                                                                                                    <  2:105664‑M1/143‑18 (MQ=255)                 gACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAG‑TCCGGCGTTAACGTCTGCT‑TTGGTCACGATGATGTCTTGGATCCGTGGTATCCGCTGGGAACGGCGAATATGGTGCAAGTGCTGCATATg                                                                                                                                    >  1:619289/1‑149 (MQ=255)                  aCGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAG‑TCCGGCATTAACGTCTGCT‑TTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATgg                                                                                                                                   <  2:423750/149‑1 (MQ=255)                   cGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTAGCCACTATTCTGGAG‑TCCGGCATTAACGTCTGCT‑TTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATggg                                                                                                                                  <  1:378862/149‑1 (MQ=255)                     tttCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGCG‑TCCGGCATTAACGTCTGCT‑TTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCCAGTCCTGCATATAGGGc                                                                                                                                >  2:393462/1‑149 (MQ=255)                          gtACGTATCGAAGACGCGGCTGAAGTACGCGCGTTAATGAGACGCTGGAG‑TCCGGCATTAACGTCTGCT‑TTGGTCACGATGATGTCTTCGATCCGTGGTTTCCGCTGGGAAAAGCTTTTCGGCTGTAAGTGCTGCATATGGGGCTGCAt                                                                                                                           <  2:472114/148‑1 (MQ=255)                          aTACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAG‑TCCGGCATTAACGTCTGCT‑TTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCAt                                                                                                                           >  1:45818/1‑149 (MQ=255)                             cGTATCCAAAACGGGGCGGCCTCACGCGCGTTAAAGAGATGCTGGAG‑TCCGGCATTAACGTCTGCT‑TTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGtt                                                                                                                        <  2:391764/149‑1 (MQ=255)                              ggagcgaaaaCGGCGTGGCATCCCGGGGGTTCAAGAGACGCTGTAG‑TCCGGCTATAACGTCTGCT‑TTCGTCACGTGTGTGTCTTTGATCCGTGGTATTCGCTGGGATCGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGttt                                                                                                                       <  2:236633/143‑1 (MQ=255)                               tATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAG‑TCCGGCATTAACGTCTGCT‑TTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTg                                                                                                                      >  1:345947/1‑149 (MQ=255)                                 tCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAG‑TCCGGCATTAACGTCTGCT‑TTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGcc                                                                                                                    >  1:307784/1‑149 (MQ=255)                                     aaaCGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAG‑TCCGGCATTAACGTCTGCT‑TTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGtt                                                                                                                <  1:190902/149‑1 (MQ=255)                                      aaCGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAG‑TCCGGCATTAACGTCTGCT‑TTGGTCACGATGATGTCCTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTg                                                                                                               >  2:110382/1‑149 (MQ=255)                                          tCGCCGCATCACGCGCGTTAAAGAGATCCCGGAGAACCCGGA‑TGACGTCGTCT‑TTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATgg                                                                                                           <  1:511328/149‑1 (MQ=255)                                                      gcgcgTTAAAGAGATGCTGGAG‑TCCGGCATTAACGTCTGCT‑TTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGa                                                                                               >  1:637349/1‑149 (MQ=255)                                                        gcgTTAAAGAGATGCTGGAG‑TCCGGCATTAACGTCTGCT‑TTGGTCACGATGATGTCTTCGATCCGTGGTATGCGCTGGGAACGGCGACTATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGGTGGGGTACGGGCAGGtt                                                                                             >  2:364215/1‑149 (MQ=255)                                                          gTTAAAGAGATGCTGGAG‑TCCGGCATTAACGTCTGCT‑TTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTaa                                                                                           >  1:639155/1‑149 (MQ=255)                                                          gTTAAAGAGATGCTGGAG‑TCCGGCATTAACGTCTGCT‑TTGCTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCCAATATGCTGCAAGTGCTGCATATGGGGGTGCATGTTTGCCAGTTGATGGGCTACGGGCACAttca                                                                                           >  1:113276/1‑147 (MQ=255)                                                           ttAAAGAGATGCTGGAG‑TCCGGCATTAACGTCTGCT‑TTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAAc                                                                                          <  1:220305/149‑1 (MQ=255)                                                           ttAAAGAGATGCTGGAG‑TCCGGCAGTAACGTCTGCT‑TTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAAc                                                                                          <  1:220233/149‑1 (MQ=255)                                                             aaaGAGATGCTGGAG‑TCCGGCATTAACGTCTGCT‑TTGGTCACGAAGATGTCTTCGATCCGGGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTTCCCGTTGATGGGCTACGGGCAGATTAAGGa                                                                                        >  1:357580/1‑149 (MQ=255)                                                                 agaTGCTGGAG‑TCCGGCATTAACGTCTGCT‑TTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGc                                                                                    >  1:390905/1‑149 (MQ=255)                                                                   aTGCTGGAG‑TCCGACATTAACGTCTGCT‑TTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGCCt                                                                                  <  2:537890/149‑1 (MQ=255)                                                                    tGCTGGAG‑TCCGGCATTAACGTCTGCT‑TTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGCCTg                                                                                 >  1:323734/1‑149 (MQ=255)                                                                         gAG‑TCCGGCATTAACGTCTGCT‑TTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTgc                                                                                                                                         >  2:505463‑M2/1‑86 (MQ=255)                                                                         gAG‑TCCGGCATTAACGTCTGCT‑TTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTgc                                                                                                                                         <  1:505463‑M2/88‑3 (MQ=255)                                                                          aG‑TCCGGCATTAACGTCTGCT‑TTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAATGCTGCATATGGGGCTGCATGTTTGACAGTTGATGAGCTACGGGCAGATTAACGATGGCCTGAATTTa                                                                           >  1:366178/1‑149 (MQ=255)                                                                           g‑TCCGGCAGTAACGTCTGCT‑TTGGTCACGATTATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGCCTGAATTTaa                                                                          <  1:302587/149‑1 (MQ=255)                                                                               cGGCATTAACGGCTGCT‑TTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGCCTGAATTTAATca                                                                       <  2:361672/149‑1 (MQ=255)                                                                                ggCATTAACGTCTGCT‑TTGGTCACGATGATGTATTCGATCCGTGGTATCCGCTGGGAACGGCGAATAAGCTGCAAATGCTGCATAGGGGGCTGCATCTTTGCCAGTTGATGGGCTCCGGCACGATTAACGATGTCCTGAATTTAACcac                                                                      >  2:50875/1‑149 (MQ=255)                                                                                 gCATTAACGTCTGCT‑TTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTAGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAATTGATGGGCTACGGGCAGATTAACGATGGCCTGAATTTAATcacc                                                                     >  1:415550/1‑149 (MQ=255)                                                                                   aTTAACGTCTGCT‑TTGGTCACGATGATGTCTGCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGTCAGTTGATGGGCTACGGGCAGATTAACGATGGCCTGAATTTAATcaccca                                                                   <  1:458036/149‑1 (MQ=255)                                                                                    ttAACGTCTGCT‑TTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCagcacttgcagcatattcgccgttcccagcggataccacggatcgaa                                                                                                      <  1:451524‑M1/113‑48 (MQ=255)                                                                                    ttAACGTCTGCT‑TTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCagcacttgcagcatattcgccgttcccagcggataccacggatcgaa                                                                                                      >  2:451524‑M1/1‑66 (MQ=255)                                                                                               t‑ttGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGCCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAAACATGGCCTTAATTTTAACACCCACCACAGCGCAAg                                                       >  2:72008/1‑149 (MQ=255)                                                                                                              tgTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGACTGAATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGCCTGAATTTAATCACCCACCACAGCGCAAGGACGTTGAATTTGc                                         >  1:454673/1‑149 (MQ=255)                                                                                                              tgTCTTCGATCCGTGGTATCCGCTGAGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGCCTGAATTTAATCAGCCCCCAGAGGCCAAGCACGGTGAAtttcc                                         >  2:297090/1‑147 (MQ=255)                                                                                                               gTCCTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGCCTGAATTTAATCACCCACCACAGCGCAAGGACGTTGAATTTGCa                                        <  1:110382/149‑1 (MQ=255)                                                                                                                tCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGCCTGAATTTAATCACCCACCACAGCGCAAGGACGTTGAATTTGCAg                                       <  1:201140/149‑1 (MQ=255)                                                                                                                  ttCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTgcatattcgccgttcccagcggataccacggatcgaagacatcatcgtgaccaaagcagacgttaa                                                                         >  2:451524‑M2/1‑47 (MQ=255)                                                                                                                  ttCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTgcatattcgccgttcccagcggataccacggatcgaagacatcatcgtgaccaaagcagacgttaa                                                                         <  1:451524‑M2/113‑67 (MQ=255)                                                                                                                     gATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGCCTGAATTTAATCACCCACCACAGCGCAAGGACGTCGCATTTGCAGGATTa                                  >  2:597439/1‑149 (MQ=255)                                                                                                                           tGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGCCTGAATTTAATCACCCACCACAGCGCAAGGACGTTGAATTTGCAGGATTACGGCAt                            <  2:79229/149‑1 (MQ=255)                                                                                                                                   gCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACCATGGCCTGAATTTAATCACCACGTGCAGGGCAAGCGCGCTGAATTTCCAGAATTACGACATTGccgccg                    >  2:397646/1‑149 (MQ=255)                                                                                                                                       ggAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGCCTGAATTTAATCACCCACCACAGCGCAAGGACGTTGAATTTGCAGGATTACGGCATTGCCGCCGGaaa                <  1:96599/149‑1 (MQ=255)                                                                                                                                                aaTATGCTGCAAGTGCTgcatattcgccgttcccagcggataccacggatcgaagacatcatcgtgaccaaagaagacgttaatgccggacaccagcatcgctttaacgcgggtgacgcaacaatcttttggatacgtatcgacacacc       <  2:105664‑M2/149‑133 (MQ=255)                                                                                                                                                 atatGCagcacttgcagcatattcgccgttcccagaggataccacggatcgaagacatcatcgtgaccaaagcagacgttaatgccggactccagcatcactttaacgcgcgtgatgccgcgaccatttggatccgtatcgaaccgtcc      >  2:75406‑M1/1‑6 (MQ=255)                                                                                                                                                  tatGCTGCAAGTGCTCCACCAAGGCCGGCATGTTTGCCAGTTGATGGGCTACGCGCAGATTAACGATGGCCTGAATTTAATCACCCACCACAGCGCAAGGACGTTGAATTTGCAGGATTACGCCCTTGCCGCCGAAAACAGCGCCAAcc     >  2:44512/1‑149 (MQ=255)                                                                                                                                                     gctgcAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGCCTGAATTTAATCACCCACCACAGCGCAAGGACGTTGAATTTGCAGGATTACGGCATTGCCGCCGGAAACAGCGCCAACCTGa  <  1:644050/149‑1 (MQ=255)                                                                                                                                                     gcagcacttgcagcatattcgccgttcccagcggataccacggatcgaagacatcatcgtgaccaaagcagacgttaatgccggactc                                                               >  2:505463‑M1/1‑2 (MQ=255)                                                                                                                                                     gcagcacttgcagcatattcgccgttcccagcggataccacggatcgaagacatcatcgtgaccaaagcagacgttaatgccggactc                                                               <  1:505463‑M1/88‑87 (MQ=255)                                                                                                                                                      |                                                                                                                                                    AATATTCATCTGCAAGGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAG‑TCCGGCATTAACGTCTGCT‑TTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGCCTGAATTTAATCACCCACCACAGCGCAAGGACGTTGAATTTGCAGGATTACGGCATTGCCGCCGGAAACAGCGCCAACCTGA  >  NC_000913_3_hsa_tpiA/357008‑357302

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.