New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	1207790 =	31 (0.740)	8 (0.210)	8/254	3.6	20.1%	coding (290/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913_3_hsa_tpiA	1209619 =	36 (0.960)					pseudogene (1/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.

GTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGA  >  NC_000913_3_hsa_tpiA/1209477‑1209767                                                                                                                                                |                                                                                                                                                     gTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCA‑GAGCCTTCTCCCAAACCACCGTTTAt                                                                                                                                                >  1:336276/1‑149 (MQ=255)          gCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATgaa                                                                                                                                       <  1:108833/149‑1 (MQ=255)          gCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATgaa                                                                                                                                       >  1:662222/1‑149 (MQ=255)          gCCTTTGCCAGTTCCGGGTATTCTTCACCACAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATgaa                                                                                                                                       <  1:202555/149‑1 (MQ=255)               tGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGGAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAAt                                                                                                                                  <  2:361847/149‑1 (MQ=255)               gtccAGTGCTGGGTAGCTTTCAGCAGAAAAAGCGGCCCCATTGCATTTCAGCCAGCCTGTTGGCGGAGGGGCTGAAGGCCACGGAACCGGGACCCCAATAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAAt                                                                                                                                  <  1:309679/147‑1 (MQ=255)                        cGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCA‑GAGCCTTCTCCCACACCAACGTTTATGAAAATgaa                                                                                                                                       >  2:172665/1‑135 (MQ=255)                        cGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATgaa                                                                                                                                       <  1:172665/135‑1 (MQ=255)                        cGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGACGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCaa                                                                                                                         >  1:482426/1‑149 (MQ=255)                                     gcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTcc                                                                                                            >  2:261312/1‑149 (MQ=255)                                      cagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt                                                                                                           >  1:654533/1‑149 (MQ=255)                                         aaaaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAAt                                                                                                                                  <  2:190429/123‑1 (MQ=255)                                         aaaaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAAt                                                                                                                                  >  1:190429/1‑123 (MQ=255)                                                 gCACGATTGCATTTCAGCCAGCTTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAg                                                                                                <  2:380612/149‑1 (MQ=255)                                                 gCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGCCACCAACAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAg                                                                                                >  1:592818/1‑149 (MQ=255)                                                   tccATTGCATTTCAGCTAGGTTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg                                                                                              <  1:167504/148‑1 (MQ=255)                                                          cATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTa                                                                                       <  2:654533/149‑1 (MQ=255)                                                                 gccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg                                                                                              >  1:421447/1‑135 (MQ=255)                                                                 gccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg                                                                                              <  2:421447/135‑1 (MQ=255)                                                                    agccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAAAATGCTTAt                                                                             >  1:583668/1‑149 (MQ=255)                                                                        tGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGc                                                                         >  1:666211/1‑149 (MQ=255)                                                                               ggAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTACTGAAAATGAATAAATAACAAGCAAATGGCCTCATTCCGACTTTTACCAGGAGGCTTTAACATCCATATTGGCttcttac                                                                  >  2:185826/1‑143 (MQ=255)                                                                                     gCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCA‑GAGCCTTCTCCCAAACCACCGTTTAGGAAAATGAAGAAATAACAAGCAAATGGCATCCTTCCTGCTTTTAACAGGGGGATTTACAATGCTTATTGGCTATGTACTCGTAt                                                            >  1:145318/1‑149 (MQ=255)                                                                                       tGAAGGCCACGGAACCGGGACACCAACAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACAGGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATca                                                          >  2:601192/1‑149 (MQ=255)                                                                                       tGAAGGCCACGGAACCGGGACACCAACAGGTAATCCACCAGCC‑GCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATca                                                          >  1:542799/1‑149 (MQ=255)                                                                                        gAAGGCCACGGAACCGGGACACCAACAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaa                                                         >  1:477996/1‑149 (MQ=255)                                                                                              cACGGAACCGGGACACCAACAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATg                                                   >  1:600230/1‑149 (MQ=255)                                                                                               aCGGAACCGGGACACCAACAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCCACAAATGa                                                  >  1:197000/1‑149 (MQ=255)                                                                                               aCGGAACCGGGACACCAACAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGa                                                  <  1:393741/149‑1 (MQ=255)                                                                                                cGGAACCGGGACACCAACAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAACCAAATGGCATCCTTCCTGCTTTTACCAGCGGGATTTAACATGCTTATTGGCTTTGTACGCGTATCAACAAATGAc                                                 >  2:587591/1‑149 (MQ=255)                                                                                                   aaCCGGGACACCAACAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAg                                              >  2:527588/1‑149 (MQ=255)                                                                                                      cGGGACACCAACAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAac                                           >  2:235825/1‑149 (MQ=255)                                                                                                              cAACAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCt                                   >  2:429002/1‑149 (MQ=255)                                                                                                              cAACAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGACTATGTACGCGTATTAAAAAATGACCAGAACACAGAACt                                   >  2:311297/1‑149 (MQ=255)                                                                                                              cAACAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCACCATTCCTGCTTTTACCAGGGGGCTTTAACATCCTACTTGCCTATGTACGCGTATCAACACATGAACAGAACACAGACCt                                   >  1:338920/1‑149 (MQ=255)                                                                                                                 cAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACa                                <  1:621938/149‑1 (MQ=255)                                                                                                                                 cTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGaa                 >  2:584069/1‑149 (MQ=255)                                                                                                                                      cccaacccaaCGTTTATGAAAATGAAGAAATAACAAGGAACTGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCATAACACAGATCTACAACGTAATGCGCTGAACtgtg            <  1:68467/149‑1 (MQ=255)                                                                                                                                       ccAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGc           >  1:602856/1‑149 (MQ=255)                                                                                                                                         aaaCCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAg         <  1:235825/149‑1 (MQ=255)                                                                                                                                         aaaCCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAg         <  1:261312/149‑1 (MQ=255)                                                                                                                                           aCCAACGTTTATGAAAATGAAGAAATAACAAGCAACTGGCATCATTCGTGCTTTTACCAGGGGTATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGa       >  1:542225/1‑149 (MQ=255)                                                                                                                                             cAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTAAAATATGCCGAATg     >  1:77677/1‑149 (MQ=255)                                                                                                                                                cGTTTATGAAAATGAAGAAATAACAAGTAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGa  <  1:185826/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                     GTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCA‑GAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGA  >  NC_000913_3_hsa_tpiA/1209477‑1209767

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.