| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 1207790 = | 9 (0.190) | 32 (0.770) | 30/248 | 0.5 | 74.4% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_hsa_tpiA | 1209619 = | 14 (0.340) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
TTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGA > NC_000913_3_hsa_tpiA/1209475‑1209767 | agaccgatgattttgcggctatccacccccactggatgagtactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaacaaaCGctt > 2:695677‑M2/145‑149 (MQ=255) cGGATAAGCCTTTGCCCGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAACCCAACGTCTATGa < 2:31169/149‑1 (MQ=255) cattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATaa < 2:772295‑M2/23‑1 (MQ=255) tccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACaa < 1:274587‑M2/26‑1 (MQ=255) ccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATg > 2:442024‑M2/117‑149 (MQ=255) actgaatgattactgatttctcattaccgccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccacaccaaCGTTTATG‑AAATGATAGTAATCACACGCAAATGGc > 2:199068‑M2/115‑149 (MQ=255) ttcAGCAGGAAAAGCGGCAGCATTGCATTTCAGCCAGCCTGTTGGCGGAGAGGCTGAAGGCAACGGAACCGGGACACCAACAGGTAATGCAGCGCCTTCTCCCAAAACAACGTTTATGAAAAGGA‑AGAAGTAACAAGCAACAGGaatca > 2:60962/1‑149 (MQ=255) aaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCttt < 2:618092/149‑1 (MQ=255) attgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTc > 1:88143‑M2/100‑141 (MQ=255) attgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTc < 2:88143‑M2/42‑1 (MQ=255) caataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgg > 2:352317‑M2/94‑149 (MQ=255) accaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAttt > 2:95579‑M2/87‑149 (MQ=255) catcataacctgtatagctatgcaaccggggcgtcctaaggtagccgttgcttcattgagttttgctcctgctcccaacccaaCGTTTATGAAAATGA‑AGAAAAACTAAACTAATGTCATCATTCCTGCTTTTACCAGGGGGATTTAAc < 1:199068‑M2/66‑1 (MQ=255) tcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg < 2:792545‑M2/57‑1 (MQ=255) tcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg > 1:792545‑M2/82‑138 (MQ=255) tcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAt < 1:442024‑M2/68‑1 (MQ=255) ccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTCTTg > 2:791942/1‑149 (MQ=255) ccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTg > 1:40709/1‑149 (MQ=255) tagctatgaaaccggtgcgtcctaccgatcccgatgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGTctt > 2:594649‑M2/70‑148 (MQ=255) ggCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa > 2:171226/1‑127 (MQ=255) ggCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa < 1:171226/127‑1 (MQ=255) ctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGt > 1:749860‑M2/67‑69 (MQ=255) ctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGt < 2:749860‑M2/3‑1 (MQ=255) tatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg > 1:759602‑M2/66‑142 (MQ=255) tatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg < 2:759602‑M2/77‑1 (MQ=255) gaaaccggtgcgtcctaatgtagcctttgctccattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGTAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAcgc < 2:399267‑M2/87‑1 (MQ=255) aaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAg > 1:550364‑M2/61‑115 (MQ=255) aaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAg < 2:550364‑M2/55‑1 (MQ=255) gtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaa > 1:260025‑M2/56‑149 (MQ=255) gtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaa > 1:429236‑M2/56‑149 (MQ=255) ctcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACaaa < 2:821753‑M2/98‑1 (MQ=255) cGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGA‑AGAAATAACAAGCAAATg < 1:314267/74‑1 (MQ=255) cGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGA‑AGAAATAACAAGCAAATg > 2:314267/1‑74 (MQ=255) cgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGACTATGTACGCGTATCAACAAATGACCGGAAcaca > 2:410540‑M2/39‑149 (MQ=255) tgctgaattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAt < 2:522389‑M2/114‑1 (MQ=255) acCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAt > 1:497940/1‑149 (MQ=255) gctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATc > 2:13744‑M2/35‑149 (MQ=255) ctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCt > 2:264018‑M2/34‑149 (MQ=255) cAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCt > 1:740754/1‑149 (MQ=255) attgagttttgctccttctcccaaacaaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACaa < 2:429236‑M2/120‑1 (MQ=255) tgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACg > 1:126423‑M2/28‑149 (MQ=255) gTACTGCCGAGCCTTCTCCCAAACCAACGTTTATGAAAAGGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACg > 2:76287/1‑149 (MQ=255) gTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGCTTTCACATGATTATTGGCAATGTACGCTTATCAAAAAACGACCCAACCACAAATCTACAGCg > 2:446197/1‑149 (MQ=255) gCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATAACCCGAACACGGATCTACAACGTAATg > 2:506832/1‑149 (MQ=255) tccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATTGCATCATTCCTGCTTTTACCAGGGGGATTTAACATTCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTg < 1:695677‑M2/132‑1 (MQ=255) tccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTg > 1:751923‑M2/18‑149 (MQ=255) cTTGTCCCAAAACAACTGTTATGAAAATGA‑AGAAATAACAAGCACATGGCAGCATTCCTGCTTTTACCAGGGGAATTTAACACGCTTCTTGGCCTTGTAGGCGAATCCACAAATGACCAGAACCCAGATCAACTTCGGAACGCGCTGaa < 2:176186/149‑1 (MQ=255) caacccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTCTTACCAGGGGGATTTAACACGCTTATTGGCTATGTACGCGAATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCa < 1:280129‑M2/141‑1 (MQ=255) aaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGc > 1:659592‑M2/3‑149 (MQ=255) cGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGa < 1:264018/149‑1 (MQ=255) | TTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGA > NC_000913_3_hsa_tpiA/1209475‑1209767 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |